@abi-software/mapintegratedvuer 1.20.1 → 1.21.0

package/dist/Scaffold-C6f7c7Ha.js

@@ -0,0 +1,308 @@
+import { C as e, _ as t, a as n, b as r, o as i } from "./connectivities-UXTqf7_0.js";
+import "./mapintegratedvuer.js";
+import { t as a } from "./ContentMixin-Vn34n5t2.js";
+import { createBlock as o, createCommentVNode as s, createElementBlock as c, markRaw as l, openBlock as u, resolveComponent as d } from "vue";
+import { ScaffoldVuer as f } from "@abi-software/scaffoldvuer";
+import "@abi-software/scaffoldvuer/dist/style.css";
+//#region src/components/viewers/Scaffold.vue
+var p = {
+	name: "Scaffold",
+	mixins: [a],
+	components: {
+		ScaffoldVuer: f,
+		HelpModeDialog: e
+	},
+	methods: {
+		showConnectivitiesByReference: async function(e) {
+			if (this.$refs.scaffold) {
+				let t = sessionStorage.getItem("flatmap-knowledge"), r = [];
+				r = t ? await i(e) : await n(this.flatmapService.mapImp, e, this.flatmapService.flatmapQueries);
+				let a = [];
+				for (let e of r) {
+					let t = this.nervesKnowledge.find((t) => t.id === e);
+					if (!t) continue;
+					let n = t["nerve-label"];
+					if (n) {
+						let e = n.flatMap((e) => e.subNerves);
+						a.push(...e);
+					}
+				}
+				this.$refs.scaffold.changeHighlightedByName(a, "", !1);
+			}
+		},
+		setNerveGreyScale: function() {
+			if (this.$refs.scaffold && this.nervesKnowledge.length) {
+				let e = this.nervesKnowledge.reduce((e, t) => e.concat(t["nerve-label"] || []), []).reduce((e, t) => e.concat(t.subNerves || []), []);
+				this.$refs.scaffold.setGreyScale(!0, e);
+			}
+		},
+		setVisibilityFilter: function(e) {
+			if (this.$refs.scaffold) {
+				let t = [], n = !!e;
+				if (e) {
+					let n = [];
+					e.OR.forEach((e) => {
+						"AND" in e && e.AND.length >= 2 && "models" in e.AND[1] && n.push(...e.AND[1].models);
+					});
+					for (let e of n) {
+						let n = this.nervesKnowledge.find((t) => t.id === e);
+						if (n) {
+							let e = n["nerve-label"].map((e) => e.subNerves).flat(Infinity);
+							t.push(...e);
+						}
+					}
+				}
+				this.$refs.scaffold.zoomToNerves(t, n);
+			}
+		},
+		syncFilter: function(e) {
+			this.$refs.scaffold?.viewingMode === "Neuron Connection" && (this.filter = e.filter((e) => e.facet?.toLowerCase() !== "show all"));
+		},
+		scaffoldResourceSelected: async function(e, t) {
+			if (this.resourceSelected(e, t, !0), t.length === 1) {
+				if (this.clickedObject = t[0].data, this.clickedObject.isNerves || this.clickedObject.anatomicalId) {
+					let e = this.clickedObject.id.toLowerCase();
+					if (this.$refs.scaffold.viewingMode === "Neuron Connection") {
+						let t = this.settingsStore.globalSettings.connectionType;
+						if (this.clickedObject.isNerves) this.filter.push({
+							facet: e,
+							term: "Nerves",
+							facetPropPath: "scaffold.connectivity.nerve"
+						});
+						else {
+							let n = t.toLowerCase(), r = this.clickedObject.anatomicalId || "";
+							if (r) this.filter.push({
+								facet: `["${r}",[]]`,
+								facetPropPath: `flatmap.connectivity.source.${n}`,
+								tagLabel: e.charAt(0).toUpperCase() + e.slice(1),
+								term: t
+							});
+							else {
+								let i = this.connectivitiesStore.filterOptions[this.entry.resource].find((e) => e.key === `flatmap.connectivity.source.${n}`), a;
+								i?.children.forEach((t) => {
+									t.label.toLowerCase() === e && (a = t), t.children?.forEach((t) => {
+										t.label.toLowerCase() === e && (a = t);
+									});
+								}), a && (r = a.key.replace(`flatmap.connectivity.source.${n}.`, ""), this.filter.push({
+									facet: r,
+									facetPropPath: `flatmap.connectivity.source.${n}`,
+									tagLabel: a.tagLabel,
+									term: t
+								}));
+							}
+						}
+						r.emit("neuron-connection-feature-click", {
+							filters: this.filter,
+							search: this.filter.length ? "" : e
+						});
+					} else if (this.$refs.scaffold.viewingMode === "Exploration") {
+						let t = this.nervesKnowledge.filter((t) => JSON.stringify(t["nerve-label"]).includes(e));
+						t.length && this.getKnowledgeTooltip({
+							data: t,
+							type: this.entry
+						});
+					}
+				}
+			} else t.length > 1 ? this.$refs.scaffold.viewingMode === "Exploration" && this.clickedObject && this.$refs.scaffold.$module.setIgnorePicking(!1) : (this.clickedObject = void 0, r.emit("connectivity-info-close"));
+		},
+		onResize: function() {
+			this.scaffoldCamera ||= l(this.$refs.scaffold?.$module?.scene?.getZincCameraControls()), this.scaffoldCamera && this.scaffoldCamera.onResize();
+		},
+		getState: function() {
+			return this.$refs.scaffold ? this.$refs.scaffold.getState() : this.entry.state;
+		},
+		search: function(e) {
+			if (this.$refs.scaffold) return this.$refs.scaffold.search(e, !0);
+		},
+		searchSuggestions: function(e, t) {
+			if (e === "" || !this.$refs.scaffold) return t;
+			this.$refs.scaffold.fetchSuggestions(e).forEach((e) => {
+				e.suggestion && t.push(e.suggestion);
+			});
+		},
+		showConnectivityTooltips: function(e) {
+			if (this.$refs.scaffold) {
+				if (e.label) this.$refs.scaffold.changeHighlightedByName([e.label], "", !1), this.$refs.scaffold.showRegionTooltip(e.label, !1, !1);
+				else {
+					let t = e.connectivityInfo["nerve-label"];
+					if (t) {
+						let e = t.flatMap((e) => e.subNerves);
+						this.$refs.scaffold.changeHighlightedByName(e, "", !1);
+					}
+					this.$refs.scaffold.hideRegionTooltip();
+				}
+			}
+		},
+		zoomToFeatures: function(e, t) {
+			if (this.$refs.scaffold) {
+				let n;
+				n = Array.isArray(e) ? e : [e.name], t && this.$refs.scaffold.changeActiveByName(n, "", !1), this.$refs.scaffold.viewRegion(n);
+			}
+		},
+		scaffoldIsReady: function() {
+			this.scaffoldLoaded = !0, this.$refs.scaffold.$module.graphicsHighlight.highlightColour = [
+				1,
+				0,
+				1
+			], this.scaffoldRef || (this.scaffoldRef = l(this.$refs.scaffold), this.scaffoldRef && (this.loadExplorerConfig(), this.connectivityKnowledge = this.connectivitiesStore.globalConnectivities, this.connectivityFilterOptions = this.connectivitiesStore.filterOptions, this.connectivityFilterSources = this.connectivitiesStore.filterSources)), this.updateViewerSettings(), r.emit("mapLoaded", this.$refs.scaffold), setTimeout(() => {
+				this.setNerveGreyScale();
+			}, 500);
+		},
+		scaffoldHighlighted: function(e, t) {
+			let n = {
+				paneIndex: this.entry.id,
+				type: e,
+				resource: t,
+				internalName: void 0
+			};
+			t && t[0] && ((t[0].data?.id === void 0 || t[0].data?.id === "") && (t[0].data.id = t[0].data?.group), n.internalName = t[0].data.id, n.eventType = "highlighted"), this.$emit("resource-selected", n);
+		},
+		scaffoldNavigated: function(e, t) {
+			if (this.mouseHovered) {
+				let n = {
+					paneIndex: this.entry.id,
+					eventType: "panZoom",
+					payload: t,
+					type: e
+				};
+				this.$emit("resource-selected", n);
+			}
+		},
+		updateWithViewUrl: function(e) {
+			this.$refs.scaffold && this.$refs.scaffold.updateViewURL(e);
+		},
+		changeViewingMode: function(e) {
+			this.$refs.scaffold && this.$refs.scaffold.changeViewingMode(e);
+		},
+		updateViewerSettings: function() {
+			if (this.$refs.scaffold) {
+				let { backgroundDisplay: e, organsDisplay: t, outlinesDisplay: n, viewingMode: r } = this.settingsStore.globalSettings;
+				this.$refs.scaffold.backgroundChangeCallback(e), this.$refs.scaffold.changeViewingMode(r), this.$refs.scaffold.setColour(t), this.$refs.scaffold.setOutlines(n);
+			}
+		}
+	},
+	computed: {
+		warningMessage: function() {
+			return this.entry.discoverId === "307" || this.entry.discoverId === 307 ? "This map displays the anatomical location and connectivity of nerves, through which the neuron populations from the ApiNATOMY models available in SCKAN can be routed." : "Under active development";
+		},
+		markerLabels: function() {
+			return this.settingsStore.globalSettings.displayMarkers ? this.settingsStore.numberOfDatasetsForFacets : {};
+		}
+	},
+	watch: {
+		visible: {
+			handler(e) {
+				e && !this.activated && (this.activated = !0, this.$nextTick(() => {
+					this.$refs.scaffold && (this.scaffoldRef = l(this.$refs.scaffold), this.scaffoldRef && (this.loadExplorerConfig(), this.connectivityKnowledge = this.connectivitiesStore.globalConnectivities, this.connectivityFilterOptions = this.connectivitiesStore.filterOptions, this.connectivityFilterSources = this.connectivitiesStore.filterSources));
+				}));
+			},
+			deep: !0,
+			immediate: !0
+		},
+		connectivityKnowledge: {
+			handler(e, t) {
+				if (this.entry.resource in e) {
+					let t = e[this.entry.resource];
+					t.length !== this.nervesKnowledge.length && (this.nervesKnowledge = t, this.scaffoldLoaded && this.setNerveGreyScale());
+				}
+			},
+			deep: !0,
+			immediate: !0
+		}
+	},
+	data: function() {
+		return {
+			activated: !1,
+			apiLocation: process.env.VUE_APP_API_LOCATION,
+			scaffoldCamera: void 0,
+			scaffoldLoaded: !1,
+			nervesKnowledge: [],
+			clickedObject: void 0,
+			filter: [],
+			query: ""
+		};
+	}
+}, m = { class: "viewer-container" };
+function h(e, t, n, r, i, a) {
+	let l = d("ScaffoldVuer"), f = d("HelpModeDialog");
+	return u(), c("div", m, [e.activated ? (u(), o(l, {
+		key: 0,
+		state: e.entry.state,
+		url: e.entry.resource,
+		region: e.entry.region,
+		onScaffoldSelected: t[0] ||= (t) => a.scaffoldResourceSelected(e.entry.type, t),
+		onScaffoldHighlighted: t[1] ||= (t) => a.scaffoldHighlighted(e.entry.type, t),
+		onScaffoldNavigated: t[2] ||= (t) => a.scaffoldNavigated(e.entry.type, t),
+		onOnReady: a.scaffoldIsReady,
+		onOpenMap: e.openMap,
+		ref: "scaffold",
+		"background-toggle": !0,
+		traditional: !0,
+		helpMode: e.helpMode,
+		helpModeActiveItem: e.helpModeActiveItem,
+		helpModeDialog: e.useHelpModeDialog,
+		onAnnotationOpen: e.onAnnotationOpen,
+		onAnnotationClose: e.onAnnotationClose,
+		onUpdateOfflineAnnotationEnabled: e.updateOfflineAnnotationEnabled,
+		annotationSidebar: e.annotationSidebar,
+		onHelpModeLastItem: e.onHelpModeLastItem,
+		onShownTooltip: e.onTooltipShown,
+		onShownMapTooltip: e.onMapTooltipShown,
+		render: e.visible,
+		"display-latest-message": !0,
+		"warning-message": a.warningMessage,
+		"display-minimap": !1,
+		"display-markers": !1,
+		"display-warning": !1,
+		enableOpenMapUI: !0,
+		"view-u-r-l": e.entry.viewUrl,
+		markerCluster: !0,
+		markerLabels: a.markerLabels,
+		flatmapAPI: e.flatmapAPI,
+		showLocalSettings: e.showLocalSettings,
+		showOpenMapButton: e.showOpenMapButton,
+		usageConfig: {
+			showTubeLinesControls: !1,
+			tubeLines: e.entry.discoverId === "307" || e.entry.discoverId === 307
+		}
+	}, null, 8, [
+		"state",
+		"url",
+		"region",
+		"onOnReady",
+		"onOpenMap",
+		"helpMode",
+		"helpModeActiveItem",
+		"helpModeDialog",
+		"onAnnotationOpen",
+		"onAnnotationClose",
+		"onUpdateOfflineAnnotationEnabled",
+		"annotationSidebar",
+		"onHelpModeLastItem",
+		"onShownTooltip",
+		"onShownMapTooltip",
+		"render",
+		"warning-message",
+		"view-u-r-l",
+		"markerLabels",
+		"flatmapAPI",
+		"showLocalSettings",
+		"showOpenMapButton",
+		"usageConfig"
+	])) : s("", !0), e.helpMode && e.useHelpModeDialog ? (u(), o(f, {
+		key: 1,
+		ref: "scaffoldHelp",
+		scaffoldRef: e.scaffoldRef,
+		lastItem: e.helpModeLastItem,
+		onShowNext: e.onHelpModeShowNext,
+		onFinishHelpMode: e.onFinishHelpMode
+	}, null, 8, [
+		"scaffoldRef",
+		"lastItem",
+		"onShowNext",
+		"onFinishHelpMode"
+	])) : s("", !0)]);
+}
+var g = /*#__PURE__*/ t(p, [["render", h], ["__scopeId", "data-v-f3cad357"]]);
+//#endregion
+export { g as default };

package/dist/Simulation-DcJScRYo.js

@@ -0,0 +1,25 @@
+import { _ as e } from "./connectivities-UXTqf7_0.js";
+import { t } from "./ContentMixin-Vn34n5t2.js";
+import { createBlock as n, openBlock as r, resolveComponent as i } from "vue";
+import { SimulationVuer as a } from "@abi-software/simulationvuer";
+import "@abi-software/simulationvuer/dist/style.css";
+//#region src/components/viewers/Simulation.vue
+var o = {
+	name: "Simulation",
+	mixins: [t],
+	components: { SimulationVuer: a },
+	computed: { id: function() {
+		return this.entry.resource ? this.entry.resource : this.entry.discoverId;
+	} }
+};
+function s(e, t, a, o, s, c) {
+	let l = i("SimulationVuer");
+	return r(), n(l, {
+		apiLocation: e.apiLocation,
+		id: c.id,
+		ref: "simulation"
+	}, null, 8, ["apiLocation", "id"]);
+}
+var c = /*#__PURE__*/ e(o, [["render", s]]);
+//#endregion
+export { c as default };