@abi-software/mapintegratedvuer 1.2.0-beta.0 → 1.2.0-beta.3

package/dist/{ContentMixin-Chn7-LkR.js → ContentMixin-BF1AsL73.js}

@@ -1,5 +1,5 @@
-import { u as _, b as y, E as f, T as g } from "./index-CB15HPC-.js";
-import { mapStores as w } from "pinia";
+import { u as w, b as N, E as m, T as E } from "./index-BVYbfsK6.js";
+import { mapStores as b } from "pinia";
 const u = [
   {
     id: "ilxtr:neuron-type-keast-13",
@@ -238,7 +238,7 @@ function p(t, a, n, s, i) {
     e.actions = [];
   return e;
 }
-function N(t, a, n, s, i) {
+function S(t, a, n, s, i) {
   if (t || a) {
     let e = {};
     switch (t) {
@@ -306,7 +306,7 @@ function N(t, a, n, s, i) {
     return e;
   }
 }
-function E(t, a, n, s, i) {
+function k(t, a, n, s, i) {
   if (t || a) {
     let e = {};
     switch (t) {
@@ -444,7 +444,7 @@ function E(t, a, n, s, i) {
     return e;
   }
 }
-function b(t, a, n, s, i) {
+function v(t, a, n, s, i) {
   if (t || a) {
     let e = {};
     switch (t) {
@@ -497,7 +497,7 @@ function b(t, a, n, s, i) {
     return e;
   }
 }
-function S(t, a, n, s, i) {
+function R(t, a, n, s, i) {
   if (t || a) {
     let e = {};
     switch (t) {
@@ -555,21 +555,21 @@ function S(t, a, n, s, i) {
     return e;
   }
 }
-function k(t, a, n, s, i, e) {
+function L(t, a, n, s, i, e) {
   switch (a) {
     case "NCBITaxon:9606":
-      return N(t, n, s, i, e);
-    case "NCBITaxon:9823":
       return S(t, n, s, i, e);
+    case "NCBITaxon:9823":
+      return R(t, n, s, i, e);
     case "NCBITaxon:10090":
-      return b(t, n, s, i, e);
+      return v(t, n, s, i, e);
     case "NCBITaxon:10114":
-      return E(t, n, s, i, e);
+      return k(t, n, s, i, e);
     default:
       return p(t, a, n, s, i);
   }
 }
-function v() {
+function B() {
   return [
     { id: "UBERON:0000948", name: "Heart", type: "simulation" },
     { id: "UBERON:0001156", name: "Colon", type: "simulation" },
@@ -580,10 +580,10 @@ function v() {
     { id: "UBERON:0002107", name: "Liver", type: "simulation" }
   ];
 }
-function R() {
-  return v();
+function U() {
+  return B();
 }
-function h(t) {
+function _(t) {
   if (t)
     for (let a = 0; a < u.length; a++) {
       if (u[a].id == t)
@@ -593,7 +593,7 @@ function h(t) {
     }
   return [];
 }
-function L(t) {
+function A(t) {
   if (t) {
     const a = t.toLowerCase();
     if (a.includes("heart"))
@@ -608,20 +608,20 @@ function L(t) {
       return { id: "UBERON:0001255", name: "Bladder" };
   }
 }
-function B(t, a) {
+function O(t, a) {
   if (t && t.resource) {
     let n = t.resource;
     Array.isArray(n) && n[0] && (n = n[0]);
-    let s, i, e, o, c, d = n.taxonomy;
-    if (n.data && n.data.id ? (s = n.data.id, i = n.data.id) : n.feature && (s = n.feature.models, i = n.feature.label, e = n.feature.dataset, o = n.feature.scaffold, c = n.feature.simulations), s || i) {
-      let l = k(s, d, i, e, o, c);
-      if (l && l.actions)
-        return l.actions[a];
+    let s, i, e, o, l, c = n.taxonomy;
+    if (n.data && n.data.id ? (s = n.data.id, i = n.data.id) : n.feature && (s = n.feature.models, i = n.feature.label, e = n.feature.dataset, o = n.feature.scaffold, l = n.feature.simulations), s || i) {
+      let d = L(s, c, i, e, o, l);
+      if (d && d.actions)
+        return d.actions[a];
     }
   }
 }
-let m = 7, r = 5;
-const U = [
+let h = 7, r = 5;
+const T = [
   {
     id: "UBERON:0000948",
     name: "heart",
@@ -796,7 +796,7 @@ const U = [
   {
     id: "UBERON:0001736",
     name: "Submandibular gland",
-    showAtZoom: m,
+    showAtZoom: h,
     keyword: !0
   },
   {
@@ -820,7 +820,7 @@ const U = [
   {
     id: "UBERON:0003708",
     name: "Carotid sinus",
-    showAtZoom: m,
+    showAtZoom: h,
     keyword: !0
   },
   {
@@ -832,7 +832,7 @@ const U = [
   {
     id: "ILX:0485722",
     name: "Nodose ganglion",
-    showAtZoom: m,
+    showAtZoom: h,
     keyword: !0
   },
   {
@@ -872,10 +872,10 @@ const U = [
     keyword: !0
   }
 ];
-function A(t) {
+function C(t) {
   return t[0].toUpperCase() + t.substring(1);
 }
-const C = {
+const I = {
   emits: ["flatmap-provenance-ready", "resource-selected", "species-changed"],
   props: {
     /**
@@ -893,7 +893,7 @@ const C = {
     }
   },
   computed: {
-    ...w(_, y),
+    ...b(w, N),
     syncMode() {
       return this.splitFlowStore.syncMode;
     },
@@ -902,7 +902,7 @@ const C = {
     }
   },
   mounted: function() {
-    f.on("startHelp", () => {
+    m.on("startHelp", () => {
       this.startHelp();
     }), this.multiflatmapRef = this.$refs.multiflatmap, this.flatmapRef = this.$refs.flatmap, this.scaffoldRef = this.$refs.scaffold;
   },
@@ -912,10 +912,10 @@ const C = {
     getState: function() {
     },
     openMap: function(t) {
-      t === "SYNC" ? (this.toggleSyncMode(), this.trackOpenMap("toggle_map_sync_mode")) : (f.emit("OpenNewMap", t), this.trackOpenMap(`open_new_${t}_map`));
+      t === "SYNC" ? (this.toggleSyncMode(), this.trackOpenMap("toggle_map_sync_mode")) : (m.emit("OpenNewMap", t), this.trackOpenMap(`open_new_${t}_map`));
     },
     trackOpenMap: function(t) {
-      g.sendEvent({
+      E.sendEvent({
         event: "interaction_event",
         event_name: "portal_maps_open_map",
         category: t,
@@ -939,8 +939,9 @@ const C = {
      * Callback when the vuers emit a selected event.
      */
     resourceSelected: function(t, a, n) {
+      var l, c, d;
       if (this.resourceHasAction(a)) {
-        f.emit("PopoverActionClick", a);
+        m.emit("PopoverActionClick", a);
         return;
       }
       let s, i = "none", e = !1;
@@ -954,8 +955,8 @@ const C = {
       if (t == "MultiFlatmap" || t == "Flatmap")
         if (o.internalName = this.idNamePair[a.feature.models], a.eventType == "click")
           if (o.eventType = "selected", a.feature.type == "marker") {
-            let c = this.idNamePair[a.feature.models], d = U.filter(
-              (l) => l.id === a.feature.models
+            let y = this.idNamePair[a.feature.models], g = T.filter(
+              (f) => f.id === a.feature.models
             );
             this.settingsStore.isFeaturedMarkerIdentifier(
               a.feature.id
@@ -965,12 +966,12 @@ const C = {
                 a.feature.id
               ),
               featuredDataset: !0
-            } : d.filter((l) => l.keyword).length > 0 ? s = {
+            } : g.filter((f) => f.keyword).length > 0 ? s = {
               type: "Search",
               term: "http://purl.obolibrary.org/obo/" + a.feature.models.replace(":", "_")
             } : s = {
               type: "Facet",
-              facet: c,
+              facet: y,
               facetPropPath: "anatomy.organ.category.name",
               term: "Anatomical structure"
             }, e = !0, t == "MultiFlatmap" && this.$refs.multiflatmap.getCurrentFlatmap().mapImp.clearSearchResults();
@@ -979,13 +980,13 @@ const C = {
         else
           a.eventType == "mouseenter" && (o.eventType = "highlighted", e = !0);
       else
-        t == "Scaffold" && (a && a[0] && (o.internalName = a[0].data.id, a[0].data.lastActionOnMarker === !0 && (s = {
+        t == "Scaffold" && (a && a[0] && ((((l = a[0].data) == null ? void 0 : l.id) === void 0 || ((c = a[0].data) == null ? void 0 : c.id) === "") && (a[0].data.id = (d = a[0].data) == null ? void 0 : d.group), o.internalName = a[0].data.id, a[0].data.lastActionOnMarker === !0 && (s = {
           type: "Facet",
-          facet: A(a[0].data.id),
+          facet: C(a[0].data.id),
           facetPropPath: "anatomy.organ.category.name",
           term: "Anatomical structure"
         })), o.eventType = "selected", e = !0, i = "search");
-      s === void 0 && n && (s = B(o, i)), s && f.emit("PopoverActionClick", s), e && this.$emit("resource-selected", o);
+      s === void 0 && n && (s = O(o, i)), s && m.emit("PopoverActionClick", s), e && this.$emit("resource-selected", o);
     },
     resourceHasAction: function(t) {
       return t.type === "URL" || t.type === "Search" || t.type === "Neuron Search" || t.type == "Facet" || t.type == "Facets";
@@ -1010,11 +1011,11 @@ const C = {
       if (t.resource && t.resource.resource && (n = t.resource.resource[0]), this.entry.type === "Scaffold") {
         if (this.$refs.scaffold.findObjectsWithGroupName(a).length === 0) {
           if (t.resource && t.resource.feature) {
-            const e = h(t.resource.feature.models);
+            const e = _(t.resource.feature.models);
             if (e.length > 0)
               return e;
           }
-          let i = L(a);
+          let i = A(a);
           if (i)
             return i;
           if (n && t.eventType === "selected")
@@ -1027,11 +1028,12 @@ const C = {
         if (a === "Bladder")
           a = "Urinary Bladder";
         else {
-          const s = h(a);
+          const s = _(a);
           s.length > 0 && (a = s[0]);
         }
       return { id: n, name: a };
     },
+    // Get the species and andaotmy info for the featured datasets
     getDatasetAnatomyInfo: function(t) {
       fetch(`${this.apiLocation}dataset_info/anatomy?identifier=${t}`).then((a) => a.json()).then((a) => {
         const n = a.result[0];
@@ -1049,15 +1051,15 @@ const C = {
         }
         let e;
         try {
-          let o = 0, c = !1;
-          for (; !c && o < n.organisms.subject.length; ) {
-            const d = n.organisms.subject[o];
-            d.species && (e = d.species.name, c = !0), o += 1;
+          let o = 0, l = !1;
+          for (; !l && o < n.organisms.subject.length; ) {
+            const c = n.organisms.subject[o];
+            c.species && (e = c.species.name, l = !0), o += 1;
           }
         } catch {
           e = void 0;
         }
-        this.updateFeaturedMarkers([s], void 0), this.settingsStore.updateFeaturedMarker({
+        this.settingsStore.updateFeaturedMarker({
           identifier: t,
           marker: s,
           doi: i,
@@ -1114,7 +1116,7 @@ const C = {
     requestSynchronisedEvent: function() {
     },
     getAvailableTerms: function() {
-      let t = R();
+      let t = U();
       for (let a = 0; a < t.length; a++)
         this.idNamePair[t[a].id] = t[a].name;
       if (this.apiLocation) {
@@ -1194,5 +1196,5 @@ const C = {
   }
 };
 export {
-  C
+  I as C
 };

package/dist/{Flatmap-BYa1gZkN.js → Flatmap-B7E6CJXk.js}

@@ -1,14 +1,14 @@
-import { c, i as h } from "./flatmapvuer-C31TbLvT.js";
-import { _ as u, t as M, T as s, E as i } from "./index-CB15HPC-.js";
-import { C as g } from "./ContentMixin-Chn7-LkR.js";
-import { D as I } from "./style-8EUTEKFl.js";
+import { $ as h, j as c } from "./flatmapvuer-CWBQT6qg.js";
+import { _ as u, t as M, T as s, E as i } from "./index-BVYbfsK6.js";
+import { C as g } from "./ContentMixin-BF1AsL73.js";
+import { D as I } from "./style-D3tYXMtJ.js";
 import { resolveComponent as r, openBlock as p, createElementBlock as y, createVNode as v, createBlock as S, createCommentVNode as F } from "vue";
 const w = {
   name: "Flatmap",
   mixins: [g, I],
   components: {
-    FlatmapVuer: c,
-    HelpModeDialog: h
+    FlatmapVuer: h,
+    HelpModeDialog: c
   },
   methods: {
     getState: function() {
@@ -140,7 +140,7 @@ function T(e, t, o, a, n, l) {
     }, null, 8, ["flatmapRef", "lastItem", "onShowNext", "onFinishHelpMode"])) : F("", !0)
   ]);
 }
-const $ = /* @__PURE__ */ u(w, [["render", T], ["__scopeId", "data-v-22cc3124"]]);
+const b = /* @__PURE__ */ u(w, [["render", T], ["__scopeId", "data-v-22cc3124"]]);
 export {
-  $ as default
+  b as default
 };

package/dist/{Iframe-D4Wz_j32.js → Iframe-CuAgkNdL.js}

@@ -1,6 +1,6 @@
-import { C as r } from "./ContentMixin-Chn7-LkR.js";
+import { C as r } from "./ContentMixin-BF1AsL73.js";
 import { openBlock as o, createElementBlock as t, createElementVNode as s } from "vue";
-import { _ as n } from "./index-CB15HPC-.js";
+import { _ as n } from "./index-BVYbfsK6.js";
 const a = {
   name: "Iframe",
   mixins: [r]

package/dist/{MultiFlatmap-C7LuHtEN.js → MultiFlatmap-DBSNZ825.js}

@@ -1,9 +1,9 @@
-import { _ as u, a as h, g as M, E as l, t as g, T as p } from "./index-CB15HPC-.js";
-import { n as y, i as v } from "./flatmapvuer-C31TbLvT.js";
-import { C as I } from "./ContentMixin-Chn7-LkR.js";
-import { D as S } from "./style-8EUTEKFl.js";
-import { resolveComponent as d, openBlock as c, createElementBlock as C, createVNode as F, createBlock as k, createCommentVNode as w } from "vue";
-const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><path d="M11.0748 3.25583C11.4141 2.42845 12.5859 2.42845 12.9252 3.25583L14.6493 7.45955C14.793 7.80979 15.1221 8.04889 15.4995 8.07727L20.0303 8.41798C20.922 8.48504 21.2841 9.59942 20.6021 10.1778L17.1369 13.1166C16.8482 13.3614 16.7225 13.7483 16.8122 14.1161L17.8882 18.5304C18.1 19.3992 17.152 20.0879 16.3912 19.618L12.5255 17.2305C12.2034 17.0316 11.7966 17.0316 11.4745 17.2305L7.60881 19.618C6.84796 20.0879 5.90001 19.3992 6.1118 18.5304L7.18785 14.1161C7.2775 13.7483 7.1518 13.3614 6.86309 13.1166L3.3979 10.1778C2.71588 9.59942 3.07796 8.48504 3.96971 8.41798L8.50046 8.07727C8.87794 8.04889 9.20704 7.80979 9.35068 7.45955L11.0748 3.25583Z" stroke="#000000" stroke-width="2"/></svg>', f = (e) => {
+import { _ as u, a as h, g as M, E as l, t as g, T as p } from "./index-BVYbfsK6.js";
+import { F as y, j as v } from "./flatmapvuer-CWBQT6qg.js";
+import { C as I } from "./ContentMixin-BF1AsL73.js";
+import { D as S } from "./style-D3tYXMtJ.js";
+import { resolveComponent as d, openBlock as f, createElementBlock as F, createVNode as C, createBlock as k, createCommentVNode as w } from "vue";
+const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><path d="M11.0748 3.25583C11.4141 2.42845 12.5859 2.42845 12.9252 3.25583L14.6493 7.45955C14.793 7.80979 15.1221 8.04889 15.4995 8.07727L20.0303 8.41798C20.922 8.48504 21.2841 9.59942 20.6021 10.1778L17.1369 13.1166C16.8482 13.3614 16.7225 13.7483 16.8122 14.1161L17.8882 18.5304C18.1 19.3992 17.152 20.0879 16.3912 19.618L12.5255 17.2305C12.2034 17.0316 11.7966 17.0316 11.4745 17.2305L7.60881 19.618C6.84796 20.0879 5.90001 19.3992 6.1118 18.5304L7.18785 14.1161C7.2775 13.7483 7.1518 13.3614 6.86309 13.1166L3.3979 10.1778C2.71588 9.59942 3.07796 8.48504 3.96971 8.41798L8.50046 8.07727C8.87794 8.04889 9.20704 7.80979 9.35068 7.45955L11.0748 3.25583Z" stroke="#000000" stroke-width="2"/></svg>', c = (e) => {
   const t = [
     {
       display: "Open AC Map",
@@ -43,7 +43,7 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
       availableSpecies: h(),
       scaffoldResource: {},
       showStarInLegend: !1,
-      openMapOptions: f("Rat")
+      openMapOptions: c("Rat")
     };
   },
   methods: {
@@ -187,7 +187,7 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
       }
     },
     flatmapChanged: async function(e) {
-      this.activeSpecies = e, this.openMapOptions = f(e), this.$emit("species-changed", e), this.entry.state && this.entry.state.species === this.activeSpecies || this.syncMode == !0 && await this.toggleSyncMode(), this.updateProvCard(), p.sendEvent({
+      this.activeSpecies = e, this.openMapOptions = c(e), this.$emit("species-changed", e), this.entry.state && this.entry.state.species === this.activeSpecies || this.syncMode == !0 && await this.toggleSyncMode(), this.updateProvCard(), p.sendEvent({
         event: "interaction_event",
         event_name: "portal_maps_species_change",
         category: this.activeSpecies
@@ -217,11 +217,13 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
       const t = this.settingsStore.featuredMarkers;
       this.updateFeaturedMarkers(t, e);
     },
+    // updateFeaturedMarkers will step through the featured markers and add them to the map
     updateFeaturedMarkers: function(e, t) {
       this.showStarInLegend = !1;
       for (let a = 0; a < e.length; ++a)
         e[a] && (this.settingsStore.featuredMarkerIdentifiers[a] || this.addFeaturedMarker(e[a], a, t) && (this.showStarInLegend = !0));
     },
+    // addFeaturedMarker: add a featured marker to the map at the specified uberon location
     addFeaturedMarker: function(e, t, a) {
       const n = this.settingsStore.featuredMarkerSpecies[t];
       if (n && !this.activeSpecies.startsWith(n))
@@ -261,14 +263,14 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
   },
   mounted: function() {
     this.getAvailableTerms(), this.getFeaturedDatasets(), l.on("markerUpdate", () => {
-      this.flatmapMarkerUpdate(this.$refs.multiflatmap.getCurrentFlatmap().mapImp);
+      this.flatmapReady && this.flatmapMarkerUpdate(this.$refs.multiflatmap.getCurrentFlatmap().mapImp);
     });
   }
 }, H = { class: "viewer-container" };
 function P(e, t, a, n, o, s) {
   const i = d("MultiFlatmapVuer"), r = d("HelpModeDialog");
-  return c(), C("div", H, [
-    F(i, {
+  return f(), F("div", H, [
+    C(i, {
       availableSpecies: e.availableSpecies,
       onFlatmapChanged: s.flatmapChanged,
       onReady: s.multiFlatmapReady,
@@ -295,7 +297,7 @@ function P(e, t, a, n, o, s) {
       onPathwaySelectionChanged: s.onPathwaySelectionChanged,
       onOpenPubmedUrl: s.onOpenPubmedUrl
     }, null, 8, ["availableSpecies", "onFlatmapChanged", "onReady", "state", "initial", "helpMode", "helpModeActiveItem", "helpModeDialog", "onHelpModeLastItem", "onShownTooltip", "onShownMapTooltip", "showStarInLegend", "openMapOptions", "flatmapAPI", "sparcAPI", "onPanZoomCallback", "onOpenMap", "onFinishHelpMode", "onPathwaySelectionChanged", "onOpenPubmedUrl"]),
-    e.helpMode && e.useHelpModeDialog ? (c(), k(r, {
+    e.helpMode && e.useHelpModeDialog ? (f(), k(r, {
       key: 0,
       ref: "multiflatmapHelp",
       multiflatmapRef: e.multiflatmapRef,
@@ -305,7 +307,7 @@ function P(e, t, a, n, o, s) {
     }, null, 8, ["multiflatmapRef", "lastItem", "onShowNext", "onFinishHelpMode"])) : w("", !0)
   ]);
 }
-const E = /* @__PURE__ */ u(b, [["render", P], ["__scopeId", "data-v-66f8ec1f"]]);
+const E = /* @__PURE__ */ u(b, [["render", P], ["__scopeId", "data-v-3e284237"]]);
 export {
   E as default
 };

package/dist/{Plot-CI9rJRr9.js → Plot-BZRoihTL.js}

@@ -1,7 +1,7 @@
 import { C as o } from "./plotvuer-X4h-Lj3L.js";
-import { C as a } from "./ContentMixin-Chn7-LkR.js";
+import { C as a } from "./ContentMixin-BF1AsL73.js";
 import { resolveComponent as r, openBlock as n, createBlock as s } from "vue";
-import { _ as m } from "./index-CB15HPC-.js";
+import { _ as m } from "./index-BVYbfsK6.js";
 const p = {
   name: "Plot",
   mixins: [a],