@abi-software/mapintegratedvuer 1.18.0 → 1.18.1

package/dist/{ConnectivityGraph-Bs-lKYZR.js → ConnectivityGraph-DqC2P99E.js}

@@ -1,5 +1,5 @@
-import { _ as c, B as h, E as m } from "./index-Dop9gDcW.js";
-import { C as y } from "./ContentMixin-DdcqAvf4.js";
+import { _ as c, B as h, E as m } from "./index-o_HxI1zc.js";
+import { C as y } from "./ContentMixin-CLr2YdhY.js";
 import { resolveComponent as p, openBlock as d, createElementBlock as l, createVNode as v } from "vue";
 const g = {
   name: "ConnectivityGraph",

package/dist/{ContentMixin-DdcqAvf4.js → ContentMixin-CLr2YdhY.js}

@@ -1,14 +1,21 @@
 import { markRaw as A } from "vue";
-import { G as C, c as _, u as E, d as O, e as N, f as x, T as d, E as m, h as R, l as P, i as B } from "./index-Dop9gDcW.js";
-import { mapStores as X } from "pinia";
-const b = function(e) {
+import { G as _, c as E, u as O, d as N, e as x, f as P, T as L, E as m, h as w, l as B, i as X } from "./index-o_HxI1zc.js";
+import { mapStores as U } from "pinia";
+const d = function(e) {
   return e ? [...new Set(e.map((n) => JSON.stringify(n)))].map(
     (n) => JSON.parse(n)
   ) : [];
-}, L = [], w = async function(e, n) {
+}, F = function(e) {
+  if (!e) return [];
+  const n = /* @__PURE__ */ new Set(), r = [];
+  return e.forEach((t) => {
+    const { id: a, name: l } = t, s = `${a.toLowerCase()}:${l.toLowerCase()}`;
+    n.has(s) || (n.add(s), r.push(t));
+  }), r;
+}, y = [], T = async function(e, n) {
   const r = n.filter(
-    (l) => L.some((s) => s.taxon === l)
-  ), t = L.filter(
+    (l) => y.some((s) => s.taxon === l)
+  ), t = y.filter(
     (l) => r.includes(l.taxon)
   ), a = n.filter(
     (l) => !r.includes(l)
@@ -20,19 +27,19 @@ const b = function(e) {
         let { entity: i, label: h } = s;
         h === "Mammalia" && (h = "Mammalia not otherwise specified");
         const o = { taxon: i, label: h };
-        t.push(o), L.push(o);
+        t.push(o), y.push(o);
       }), t;
   } else
     return t;
-}, y = function(e, n) {
+}, R = function(e, n) {
   if (!e || !n) return !1;
   let r = JSON.stringify(e), t = JSON.stringify(n);
   return r.indexOf(t) !== -1;
-}, F = (e, n) => {
+}, M = (e, n) => {
   const r = e.name ?? e, t = n.name ?? n, a = r.toUpperCase(), l = t.toUpperCase();
   return a < l ? -1 : a > l ? 1 : 0;
 };
-let T = function() {
+let S = function() {
   this.initialise = function(e) {
     this.flatmapAPI = e, this.destinations = [], this.origins = [], this.components = [], this.destinationsWithDatasets = [], this.originsWithDatasets = [], this.componentsWithDatasets = [], this.destinationsCombinations = [], this.originsCombinations = [], this.componentsCombinations = [], this.singleConnectivityList = [], this.hasSingleConnectivityList = !1, this.rawURLs = [], this.controller = void 0, this.uberons = [], this.lookUp = [], this.connectivitySource = "map", this.noMapConnectivity = !1;
   }, this.createTooltipData = async function(e, n) {
@@ -42,7 +49,7 @@ let T = function() {
     if (n.provenanceTaxonomy) {
       t = [];
       try {
-        const l = await w(e, n.provenanceTaxonomy);
+        const l = await T(e, n.provenanceTaxonomy);
         l.length && l.forEach((s) => {
           const { label: i } = s;
           t.push(i);
@@ -55,9 +62,9 @@ let T = function() {
       destinations: this.destinations,
       origins: this.origins,
       components: this.components,
-      destinationsWithDatasets: this.destinationsWithDatasets,
-      originsWithDatasets: this.originsWithDatasets,
-      componentsWithDatasets: this.componentsWithDatasets,
+      destinationsWithDatasets: F(this.destinationsWithDatasets),
+      originsWithDatasets: F(this.originsWithDatasets),
+      componentsWithDatasets: F(this.componentsWithDatasets),
       destinationsCombinations: this.destinationsCombinations,
       originsCombinations: this.originsCombinations,
       componentsCombinations: this.componentsCombinations,
@@ -74,11 +81,11 @@ let T = function() {
     return {
       ...e,
       origins: this.origins,
-      originsWithDatasets: this.originsWithDatasets,
+      originsWithDatasets: F(this.originsWithDatasets),
       components: this.components,
-      componentsWithDatasets: this.componentsWithDatasets,
+      componentsWithDatasets: F(this.componentsWithDatasets),
       destinations: this.destinations,
-      destinationsWithDatasets: this.destinationsWithDatasets,
+      destinationsWithDatasets: F(this.destinationsWithDatasets),
       destinationsCombinations: this.destinationsCombinations,
       originsCombinations: this.originsCombinations,
       componentsCombinations: this.componentsCombinations,
@@ -94,7 +101,7 @@ let T = function() {
     return new Promise(async (r) => {
       let t = {};
       this.uberons = [];
-      const a = await w(e, n);
+      const a = await T(e, n);
       a.length && (a.forEach((l) => {
         const { taxon: s, label: i } = l;
         t[s] = i, this.uberons.push({
@@ -130,9 +137,9 @@ let T = function() {
       Array.isArray(a) ? t.push(a.flat()) : t.push(a);
     }), t.flat();
   }, this.findComponents = function(e, n, r, t) {
-    let a = e.connectivity.flat(), l = b(a), s = [], i = !1;
+    let a = e.connectivity.flat(), l = d(a), s = [], i = !1;
     return l.forEach((h) => {
-      i = !1, y(n, h) && (i = !0), t && y(t, h) && (i = !0), y(r, h) && (i = !0), i || s.push(h);
+      i = !1, R(n, h) && (i = !0), t && R(t, h) && (i = !0), R(r, h) && (i = !0), i || s.push(h);
     }), s;
   }, this.retrieveFlatmapKnowledgeForEvent = async function(e, n) {
     this.controller && this.controller.abort(), this.controller = new AbortController(), this.controller.signal;
@@ -142,7 +149,7 @@ let T = function() {
     return await Promise.all([t]);
   }, this.queryForConnectivityNew = async function(e, n, r = "map", t = !0) {
     const a = /^sckan-(\d{4})/.exec(e.knowledgeSource || ""), s = (a ? Number(a[1]) : 0) >= 2026, i = e.mapMetadata.uuid, h = this.flatmapAPI;
-    return this.connectivitySource = s ? "sckan" : r, s && (this.singleConnectivityList = await C(h, i, n)), new Promise((o) => {
+    return this.connectivitySource = s ? "sckan" : r, s && (this.singleConnectivityList = await _(h, i, n)), new Promise((o) => {
       (this.connectivitySource === "map" ? this.queryMapConnectivity(e.mapMetadata.uuid, n) : e.queryKnowledge(n)).then((c) => {
         if (this.checkConnectivityExists(c)) {
           this.connectivitySource === "map" && (this.noMapConnectivity = !1);
@@ -215,11 +222,11 @@ let T = function() {
     let t = this.flattenConnectivity(e), a = this.flattenConnectivity(n), l = this.flattenConnectivity(r);
     this.originsWithDatasets = this.uberons.filter(
       (s) => t.indexOf(s.id) !== -1
-    ).sort(F), this.componentsWithDatasets = this.uberons.filter(
+    ).sort(M), this.componentsWithDatasets = this.uberons.filter(
       (s) => a.indexOf(s.id) !== -1
-    ).sort(F), this.destinationsWithDatasets = this.uberons.filter(
+    ).sort(M), this.destinationsWithDatasets = this.uberons.filter(
       (s) => l.indexOf(s.id) !== -1
-    ).sort(F), this.singleConnectivityList.length > 0 && this.singleConnectivityList.forEach((s) => {
+    ).sort(M), this.singleConnectivityList.length > 0 && this.singleConnectivityList.forEach((s) => {
       const { sckanNodeId: i, sckanNodeLabel: h, mapNodeId: o, mapNodeLabel: u } = s;
       r.find((c) => JSON.stringify(c) === JSON.stringify(i)) && (this.destinationsCombinations.push({
         sckanId: i,
@@ -263,20 +270,20 @@ let T = function() {
         const h = ["ilxtr:hasSomaLocatedIn"], o = ["ilxtr:hasAxonPresynapticElementIn", "ilxtr:hasAxonSensorySubcellularElementIn"];
         h.forEach((u) => {
           u in n["node-phenotypes"] && t.push(...n["node-phenotypes"][u]);
-        }), t = b(t), o.forEach((u) => {
+        }), t = d(t), o.forEach((u) => {
           u in n["node-phenotypes"] && a.push(...n["node-phenotypes"][u]);
-        }), a = b(a);
+        }), a = d(a);
       } else
-        a = b(n.axons), n.somas && n.somas.length > 0 && t.push(...n.somas), n.dendrites && n.dendrites.length > 0 && t.push(...n.dendrites), t = b(t), l = n.somas;
+        a = d(n.axons), n.somas && n.somas.length > 0 && t.push(...n.somas), n.dendrites && n.dendrites.length > 0 && t.push(...n.dendrites), t = d(t), l = n.somas;
       const s = this.findComponents(n, a, t, l), i = this.findAllIdsFromConnectivity(n);
       this.createLabelLookup(e, i).then((h) => {
         this.origins = t.map(
           (o) => this.createLabelFromNeuralNode(o, h)
-        ).sort(F), this.components = s.map(
+        ).sort(M), this.components = s.map(
           (o) => this.createLabelFromNeuralNode(o, h)
-        ).sort(F), this.destinations = a.map(
+        ).sort(M), this.destinations = a.map(
           (o) => this.createLabelFromNeuralNode(o, h)
-        ).sort(F), this.flattenAndFindDatasets(t, s, a), r({
+        ).sort(M), this.flattenAndFindDatasets(t, s, a), r({
           ids: {
             dendrites: t,
             components: s,
@@ -316,7 +323,7 @@ let T = function() {
     return l.values;
   };
 };
-const S = [
+const I = [
   {
     id: 0,
     nerve_id: "ILX:0793723",
@@ -1129,9 +1136,9 @@ const S = [
     "FMA subclasses (in human nerves)": ["FMA:6892", "FMA:6893"],
     "subclass labels": ["Right T9 grey ramus communicans", "Left T9 grey ramus communicans"]
   }
-], U = () => {
+], D = () => {
   const e = {};
-  return S.forEach((n) => {
+  return I.forEach((n) => {
     const r = n.nerve_id, t = n.label.toLowerCase(), a = n["subclass labels"];
     if (r && t !== "nerve") {
       if (!a.length)
@@ -1150,7 +1157,7 @@ const S = [
     label: "Nerves",
     children: []
   }, r = [];
-  for (const t of S) {
+  for (const t of I) {
     if (t.label === "nerve")
       continue;
     let a = {
@@ -1169,10 +1176,10 @@ const S = [
   }
   return r.length && (n.children = r.sort((t, a) => t.label.localeCompare(a.label)), e.push(n)), e;
 };
-function D(e) {
+function $(e) {
   return e[0].toUpperCase() + e.substring(1);
 }
-const J = {
+const W = {
   emits: ["flatmap-provenance-ready", "resource-selected", "species-changed"],
   props: {
     /**
@@ -1191,7 +1198,7 @@ const J = {
   },
   inject: ["showGlobalSettings", "showOpenMapButton"],
   computed: {
-    ...X(_, E, O, N),
+    ...U(E, O, N, x),
     idNamePair() {
       return this.splitFlowStore.idNamePair;
     },
@@ -1248,7 +1255,7 @@ const J = {
       this.settingsStore.updateMapManager(e);
     },
     trackOpenMap: function(e) {
-      d.sendEvent({
+      L.sendEvent({
         event: "interaction_event",
         event_name: "portal_maps_open_map",
         category: e,
@@ -1328,7 +1335,7 @@ const J = {
         } else r.eventType == "mouseenter" && (l.eventType = "highlighted", a = !0);
       else e == "Scaffold" && (r && ((((i = r.data) == null ? void 0 : i.id) === void 0 || ((h = r.data) == null ? void 0 : h.id) === "") && (r.data.id = (o = r.data) == null ? void 0 : o.group), l.internalName = r.data.id, r.data.lastActionOnMarker === !0 && (t = {
         type: "Facet",
-        facets: [D(r.data.id)]
+        facets: [$(r.data.id)]
       })), l.eventType = "selected", a = !0);
       t && m.emit("PopoverActionClick", t), a && this.$emit("resource-selected", l);
     },
@@ -1388,7 +1395,7 @@ const J = {
         n.forEach((h) => {
           const { models: o } = h.feature;
           i.push(o);
-        }), d.sendEvent({
+        }), L.sendEvent({
           event: "interaction_event",
           event_name: "portal_maps_connectivity",
           category: i.join(", "),
@@ -1518,7 +1525,7 @@ const J = {
     },
     mockUpFlatmapService: async function() {
       const r = (await (await fetch(this.flatmapAPI)).json()).filter((u) => u.id === "human-flatmap_male").sort((u, c) => c.created.localeCompare(u.created))[0], t = r.uuid, a = r.sckan["knowledge-source"], s = await (await fetch(`${this.flatmapAPI}/flatmap/${t}/pathways`)).json();
-      this.flatmapQueries = A(new T()), this.flatmapQueries.initialise(this.flatmapAPI);
+      this.flatmapQueries = A(new S()), this.flatmapQueries.initialise(this.flatmapAPI);
       const i = {
         mapMetadata: {
           uuid: t,
@@ -1536,13 +1543,13 @@ const J = {
         queryLabels: async (u) => {
           const c = `select source, entity, knowledge from knowledge where (source=? or source is null) and entity in (?${", ?".repeat(u.length - 1)}) order by entity, source desc`, v = [a, ...u], f = await this.flatmapQueries.queryKnowledge(c, v), p = [];
           let g;
-          for (const M of f)
-            if (M[1] !== g) {
-              const I = JSON.parse(M[2]);
+          for (const b of f)
+            if (b[1] !== g) {
+              const C = JSON.parse(b[2]);
               p.push({
-                entity: M[1],
-                label: I.label || M[1]
-              }), g = M[1];
+                entity: b[1],
+                label: C.label || b[1]
+              }), g = b[1];
             }
           return p;
         }
@@ -1550,20 +1557,20 @@ const J = {
       return {
         mockup: !0,
         getFilterOptions: async (u, c) => {
-          const f = await B(this.flatmapAPI, u, c, void 0);
+          const f = await X(this.flatmapAPI, u, c, void 0);
           return [...h, ...f];
         },
-        getTermNerveMaps: U,
+        getTermNerveMaps: D,
         mapImp: i
       };
     },
     loadConnectivityExplorerConfig: async function(e) {
       var l;
-      const n = e.mapImp, r = R(n), t = e.mockup ? n.resource : n.uuid;
+      const n = e.mapImp, r = w(n), t = e.mockup ? n.resource : n.uuid;
       let a = [];
       if (!this.connectivityKnowledge[r]) {
-        this.flatmapQueries = A(new T()), this.flatmapQueries.initialise(this.flatmapAPI);
-        const s = await P(n, this.flatmapQueries);
+        this.flatmapQueries = A(new S()), this.flatmapQueries.initialise(this.flatmapAPI);
+        const s = await B(n, this.flatmapQueries);
         this.connectivityKnowledge[r] = s.filter((i) => {
           var h;
           return (h = i.connectivity) == null ? void 0 : h.length;
@@ -1604,7 +1611,7 @@ const J = {
         provenanceTaxonomy: e.taxons,
         feature: []
       });
-      return n.knowledgeSource = R(this.flatmapService.mapImp), n.mapId = this.flatmapService.mapImp.mapMetadata.id, n.mapuuid = this.flatmapService.mapImp.mapMetadata.uuid, n["nerve-label"] = e["nerve-label"], n.ready = !0, n;
+      return n.knowledgeSource = w(this.flatmapService.mapImp), n.mapId = this.flatmapService.mapImp.mapMetadata.id, n.mapuuid = this.flatmapService.mapImp.mapMetadata.uuid, n["nerve-label"] = e["nerve-label"], n.ready = !0, n;
     },
     getKnowledgeTooltip: async function(e) {
       this.tooltipEntry = [], e.data.forEach((t) => this.tooltipEntry.push({ title: t.label, featureId: [t.id], ready: !1 })), m.emit("connectivity-info-open", this.tooltipEntry);
@@ -1619,13 +1626,13 @@ const J = {
       n.includes(a) || (n.push(a), await this.flatmapQueries.queryForConnectivityNew(this.flatmapService.mapImp, r.featureId[0], t), this.tooltipEntry = this.tooltipEntry.map((i) => i.featureId[0] === r.featureId[0] ? this.flatmapQueries.updateTooltipData(i) : i), m.emit("connectivity-info-open", this.tooltipEntry));
     },
     trackEvent: function(e) {
-      d.sendEvent(e);
+      L.sendEvent(e);
     }
   },
   data: function() {
     return {
       apiLocation: void 0,
-      activeSpecies: x,
+      activeSpecies: P,
       scaffoldCamera: void 0,
       mainStyle: {
         height: this.entry.datasetTitle ? "calc(100% - 30px)" : "100%",
@@ -1664,5 +1671,5 @@ const J = {
   }
 };
 export {
-  J as C
+  W as C
 };

package/dist/{Flatmap-7SmySiz0.js → Flatmap-7QqdYiDc.js}

@@ -1,6 +1,6 @@
-import { _ as d, z as c, T as h, E as l } from "./index-Dop9gDcW.js";
-import { C as u } from "./ContentMixin-DdcqAvf4.js";
-import { D as y } from "./style-Bqxs_o_d.js";
+import { _ as d, z as c, T as h, E as l } from "./index-o_HxI1zc.js";
+import { C as u } from "./ContentMixin-CLr2YdhY.js";
+import { D as y } from "./style-BRt2hfBy.js";
 import { FlatmapVuer as g } from "@abi-software/flatmapvuer";
 import { resolveComponent as r, openBlock as p, createElementBlock as M, createVNode as C, createBlock as v, createCommentVNode as I } from "vue";
 const S = {

package/dist/{Iframe-BqotmM4i.js → Iframe-Di_ovKaM.js}

@@ -1,6 +1,6 @@
-import { C as r } from "./ContentMixin-DdcqAvf4.js";
+import { C as r } from "./ContentMixin-CLr2YdhY.js";
 import { openBlock as o, createElementBlock as t, createElementVNode as a } from "vue";
-import { _ as s } from "./index-Dop9gDcW.js";
+import { _ as s } from "./index-o_HxI1zc.js";
 const n = {
   name: "Iframe",
   mixins: [r]

package/dist/{MultiFlatmap-x3GEBnUb.js → MultiFlatmap-B3K1bY4o.js}

@@ -1,6 +1,6 @@
-import { _ as c, z as h, E as r, T as l, a as g } from "./index-Dop9gDcW.js";
-import { C as M } from "./ContentMixin-DdcqAvf4.js";
-import { D as y } from "./style-Bqxs_o_d.js";
+import { _ as c, z as h, E as r, T as l, a as g } from "./index-o_HxI1zc.js";
+import { C as M } from "./ContentMixin-CLr2YdhY.js";
+import { D as y } from "./style-BRt2hfBy.js";
 import { MultiFlatmapVuer as C } from "@abi-software/flatmapvuer";
 import { resolveComponent as p, openBlock as m, createElementBlock as v, createVNode as I, createBlock as S, createCommentVNode as F } from "vue";
 const w = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><path d="M11.0748 3.25583C11.4141 2.42845 12.5859 2.42845 12.9252 3.25583L14.6493 7.45955C14.793 7.80979 15.1221 8.04889 15.4995 8.07727L20.0303 8.41798C20.922 8.48504 21.2841 9.59942 20.6021 10.1778L17.1369 13.1166C16.8482 13.3614 16.7225 13.7483 16.8122 14.1161L17.8882 18.5304C18.1 19.3992 17.152 20.0879 16.3912 19.618L12.5255 17.2305C12.2034 17.0316 11.7966 17.0316 11.4745 17.2305L7.60881 19.618C6.84796 20.0879 5.90001 19.3992 6.1118 18.5304L7.18785 14.1161C7.2775 13.7483 7.1518 13.3614 6.86309 13.1166L3.3979 10.1778C2.71588 9.59942 3.07796 8.48504 3.96971 8.41798L8.50046 8.07727C8.87794 8.04889 9.20704 7.80979 9.35068 7.45955L11.0748 3.25583Z" stroke="#000000" stroke-width="2"/></svg>', d = (e) => [

package/dist/{Plot-B-1imQY1.js → Plot-COeyJ7mQ.js}

@@ -1,7 +1,7 @@
 import { PlotVuer as o } from "@abi-software/plotvuer";
-import { C as r } from "./ContentMixin-DdcqAvf4.js";
+import { C as r } from "./ContentMixin-CLr2YdhY.js";
 import { resolveComponent as a, openBlock as n, createBlock as s } from "vue";
-import { _ as p } from "./index-Dop9gDcW.js";
+import { _ as p } from "./index-o_HxI1zc.js";
 const l = {
   name: "Plot",
   mixins: [r],

package/dist/{Scaffold-C6-zfB3X.js → Scaffold-D94deYVk.js}

@@ -1,6 +1,6 @@
 import { resolveComponent as g, openBlock as c, createElementBlock as y, createBlock as m, createCommentVNode as v, markRaw as d } from "vue";
-import { _ as w, z as b, E as h, g as S, b as $ } from "./index-Dop9gDcW.js";
-import { C as M } from "./ContentMixin-DdcqAvf4.js";
+import { _ as w, z as b, E as h, g as S, b as $ } from "./index-o_HxI1zc.js";
+import { C as M } from "./ContentMixin-CLr2YdhY.js";
 import { ScaffoldVuer as C } from "@abi-software/scaffoldvuer";
 const O = {
   name: "Scaffold",

package/dist/{Simulation-5zuCkV0O.js → Simulation-Pd_9o8iF.js}

@@ -1,7 +1,7 @@
-import { C as n } from "./ContentMixin-DdcqAvf4.js";
+import { C as n } from "./ContentMixin-CLr2YdhY.js";
 import { SimulationVuer as e } from "@abi-software/simulationvuer";
 import { resolveComponent as r, openBlock as a, createBlock as c } from "vue";
-import { _ as m } from "./index-Dop9gDcW.js";
+import { _ as m } from "./index-o_HxI1zc.js";
 const s = {
   name: "Simulation",
   mixins: [n],