@abi-software/mapintegratedvuer 1.17.3 → 1.17.4

package/dist/{ContentMixin-NLNFG_hM.js → ContentMixin-BImmmP1E.js}

@@ -1,38 +1,38 @@
-import { markRaw as y } from "vue";
-import { G as _, c as E, u as O, d as N, e as x, f as P, T as M, E as m, h as R, l as B, i as w, j as X, k as U } from "./index-CgeNF-PU.js";
-import { mapStores as k } from "pinia";
+import { markRaw as A } from "vue";
+import { G as C, c as _, u as E, d as O, e as N, f as x, T as d, E as m, h as R, l as P, i as B } from "./index-qyfmiqHe.js";
+import { mapStores as X } from "pinia";
 const b = function(e) {
   return e ? [...new Set(e.map((n) => JSON.stringify(n)))].map(
     (n) => JSON.parse(n)
   ) : [];
-}, d = [], T = async function(e, n) {
+}, L = [], w = async function(e, n) {
   const r = n.filter(
-    (i) => d.some((l) => l.taxon === i)
-  ), t = d.filter(
-    (i) => r.includes(i.taxon)
+    (l) => L.some((s) => s.taxon === l)
+  ), t = L.filter(
+    (l) => r.includes(l.taxon)
   ), a = n.filter(
-    (i) => !r.includes(i)
+    (l) => !r.includes(l)
   );
   if (a.length) {
-    const i = await e.queryLabels(a);
-    if (i.length)
-      return i.forEach((l) => {
-        let { entity: s, label: h } = l;
+    const l = await e.queryLabels(a);
+    if (l.length)
+      return l.forEach((s) => {
+        let { entity: i, label: h } = s;
         h === "Mammalia" && (h = "Mammalia not otherwise specified");
-        const o = { taxon: s, label: h };
-        t.push(o), d.push(o);
+        const o = { taxon: i, label: h };
+        t.push(o), L.push(o);
       }), t;
   } else
     return t;
-}, L = function(e, n) {
+}, y = function(e, n) {
   if (!e || !n) return !1;
   let r = JSON.stringify(e), t = JSON.stringify(n);
   return r.indexOf(t) !== -1;
-}, A = (e, n) => {
-  const r = e.name ?? e, t = n.name ?? n, a = r.toUpperCase(), i = t.toUpperCase();
-  return a < i ? -1 : a > i ? 1 : 0;
+}, F = (e, n) => {
+  const r = e.name ?? e, t = n.name ?? n, a = r.toUpperCase(), l = t.toUpperCase();
+  return a < l ? -1 : a > l ? 1 : 0;
 };
-let S = function() {
+let T = function() {
   this.initialise = function(e) {
     this.flatmapAPI = e, this.destinations = [], this.origins = [], this.components = [], this.destinationsWithDatasets = [], this.originsWithDatasets = [], this.componentsWithDatasets = [], this.destinationsCombinations = [], this.originsCombinations = [], this.componentsCombinations = [], this.singleConnectivityList = [], this.hasSingleConnectivityList = !1, this.rawURLs = [], this.controller = void 0, this.uberons = [], this.lookUp = [], this.connectivitySource = "map", this.noMapConnectivity = !1;
   }, this.createTooltipData = async function(e, n) {
@@ -42,13 +42,13 @@ let S = function() {
     if (n.provenanceTaxonomy) {
       t = [];
       try {
-        const i = await T(e, n.provenanceTaxonomy);
-        i.length && i.forEach((l) => {
-          const { label: s } = l;
-          t.push(s);
+        const l = await w(e, n.provenanceTaxonomy);
+        l.length && l.forEach((s) => {
+          const { label: i } = s;
+          t.push(i);
         });
-      } catch (i) {
-        console.log(i);
+      } catch (l) {
+        console.log(l);
       }
     }
     return {
@@ -94,12 +94,12 @@ let S = function() {
     return new Promise(async (r) => {
       let t = {};
       this.uberons = [];
-      const a = await T(e, n);
-      a.length && (a.forEach((i) => {
-        const { taxon: l, label: s } = i;
-        t[l] = s, this.uberons.push({
-          id: l,
-          name: s
+      const a = await w(e, n);
+      a.length && (a.forEach((l) => {
+        const { taxon: s, label: i } = l;
+        t[s] = i, this.uberons.push({
+          id: s,
+          name: i
         });
       }), r(t));
     });
@@ -130,10 +130,10 @@ let S = function() {
       Array.isArray(a) ? t.push(a.flat()) : t.push(a);
     }), t.flat();
   }, this.findComponents = function(e, n, r, t) {
-    let a = e.connectivity.flat(), i = b(a), l = [], s = !1;
-    return i.forEach((h) => {
-      s = !1, L(n, h) && (s = !0), t && L(t, h) && (s = !0), L(r, h) && (s = !0), s || l.push(h);
-    }), l;
+    let a = e.connectivity.flat(), l = b(a), s = [], i = !1;
+    return l.forEach((h) => {
+      i = !1, y(n, h) && (i = !0), t && y(t, h) && (i = !0), y(r, h) && (i = !0), i || s.push(h);
+    }), s;
   }, this.retrieveFlatmapKnowledgeForEvent = async function(e, n) {
     this.controller && this.controller.abort(), this.controller = new AbortController(), this.controller.signal;
     const r = n.resource;
@@ -141,8 +141,8 @@ let S = function() {
     let t = await this.queryForConnectivityNew(e, r[0]);
     return await Promise.all([t]);
   }, this.queryForConnectivityNew = async function(e, n, r = "map", t = !0) {
-    const a = /^sckan-(\d{4})/.exec(e.knowledgeSource || ""), l = (a ? Number(a[1]) : 0) >= 2026, s = e.mapMetadata.uuid, h = this.flatmapAPI;
-    return this.connectivitySource = l ? "sckan" : r, l && (this.singleConnectivityList = await _(h, s, n)), new Promise((o) => {
+    const a = /^sckan-(\d{4})/.exec(e.knowledgeSource || ""), s = (a ? Number(a[1]) : 0) >= 2026, i = e.mapMetadata.uuid, h = this.flatmapAPI;
+    return this.connectivitySource = s ? "sckan" : r, s && (this.singleConnectivityList = await C(h, i, n)), new Promise((o) => {
       (this.connectivitySource === "map" ? this.queryMapConnectivity(e.mapMetadata.uuid, n) : e.queryKnowledge(n)).then((c) => {
         if (this.checkConnectivityExists(c)) {
           this.connectivitySource === "map" && (this.noMapConnectivity = !1);
@@ -174,7 +174,7 @@ let S = function() {
       throw new Error(t);
     }
   }, this.queryForConnectivity = function(e, n, r, t = !0) {
-    const a = { sql: this.buildConnectivitySqlStatement(n) }, i = {
+    const a = { sql: this.buildConnectivitySqlStatement(n) }, l = {
       method: "POST",
       headers: {
         "Content-Type": "application/json"
@@ -183,17 +183,17 @@ let S = function() {
       ...r ? { signal: r } : {}
       // add signal to header if it exists
     };
-    return new Promise((l) => {
-      fetch(`${this.flatmapAPI}knowledge/query/`, i).then((s) => s.json()).then((s) => {
-        if (this.connectivityExists(s)) {
-          let h = JSON.parse(s.values[0][0]);
+    return new Promise((s) => {
+      fetch(`${this.flatmapAPI}knowledge/query/`, l).then((i) => i.json()).then((i) => {
+        if (this.connectivityExists(i)) {
+          let h = JSON.parse(i.values[0][0]);
           t ? this.processConnectivity(e, h).then((o) => {
-            l(o);
-          }) : l(h);
+            s(o);
+          }) : s(h);
         } else
-          l(!1);
-      }).catch((s) => {
-        s.name === "AbortError" || console.error("Error:", s), l(!1);
+          s(!1);
+      }).catch((i) => {
+        i.name === "AbortError" || console.error("Error:", i), s(!1);
       });
     });
   }, this.checkConnectivityExists = function(e) {
@@ -212,17 +212,17 @@ let S = function() {
       n[a] == null ? t += `, ${a}` : t += `, ${n[a]}`;
     }), t;
   }, this.flattenAndFindDatasets = function(e, n, r) {
-    let t = this.flattenConnectivity(e), a = this.flattenConnectivity(n), i = this.flattenConnectivity(r);
+    let t = this.flattenConnectivity(e), a = this.flattenConnectivity(n), l = this.flattenConnectivity(r);
     this.originsWithDatasets = this.uberons.filter(
-      (l) => t.indexOf(l.id) !== -1
-    ).sort(A), this.componentsWithDatasets = this.uberons.filter(
-      (l) => a.indexOf(l.id) !== -1
-    ).sort(A), this.destinationsWithDatasets = this.uberons.filter(
-      (l) => i.indexOf(l.id) !== -1
-    ).sort(A), this.singleConnectivityList.length > 0 && this.singleConnectivityList.forEach((l) => {
-      const { sckanNodeId: s, sckanNodeLabel: h, mapNodeId: o, mapNodeLabel: u } = l;
-      r.find((c) => JSON.stringify(c) === JSON.stringify(s)) && (this.destinationsCombinations.push({
-        sckanId: s,
+      (s) => t.indexOf(s.id) !== -1
+    ).sort(F), this.componentsWithDatasets = this.uberons.filter(
+      (s) => a.indexOf(s.id) !== -1
+    ).sort(F), this.destinationsWithDatasets = this.uberons.filter(
+      (s) => l.indexOf(s.id) !== -1
+    ).sort(F), this.singleConnectivityList.length > 0 && this.singleConnectivityList.forEach((s) => {
+      const { sckanNodeId: i, sckanNodeLabel: h, mapNodeId: o, mapNodeLabel: u } = s;
+      r.find((c) => JSON.stringify(c) === JSON.stringify(i)) && (this.destinationsCombinations.push({
+        sckanId: i,
         sckanLabel: h,
         mapId: o,
         mapLabel: u
@@ -232,8 +232,8 @@ let S = function() {
           id: f,
           name: u.split(",")[v]
         });
-      })), e.find((c) => JSON.stringify(c) === JSON.stringify(s)) && (this.originsCombinations.push({
-        sckanId: s,
+      })), e.find((c) => JSON.stringify(c) === JSON.stringify(i)) && (this.originsCombinations.push({
+        sckanId: i,
         sckanLabel: h,
         mapId: o,
         mapLabel: u
@@ -243,8 +243,8 @@ let S = function() {
           id: f,
           name: u.split(",")[v]
         });
-      })), n.find((c) => JSON.stringify(c) === JSON.stringify(s)) && (this.componentsCombinations.push({
-        sckanId: s,
+      })), n.find((c) => JSON.stringify(c) === JSON.stringify(i)) && (this.componentsCombinations.push({
+        sckanId: i,
         sckanLabel: h,
         mapId: o,
         mapLabel: u
@@ -258,7 +258,7 @@ let S = function() {
     });
   }, this.processConnectivity = function(e, n) {
     return new Promise((r) => {
-      let t = [], a = [], i;
+      let t = [], a = [], l;
       if (n && n["node-phenotypes"]) {
         const h = ["ilxtr:hasSomaLocatedIn"], o = ["ilxtr:hasAxonPresynapticElementIn", "ilxtr:hasAxonSensorySubcellularElementIn"];
         h.forEach((u) => {
@@ -267,19 +267,19 @@ let S = function() {
           u in n["node-phenotypes"] && a.push(...n["node-phenotypes"][u]);
         }), a = b(a);
       } else
-        a = b(n.axons), n.somas && n.somas.length > 0 && t.push(...n.somas), n.dendrites && n.dendrites.length > 0 && t.push(...n.dendrites), t = b(t), i = n.somas;
-      const l = this.findComponents(n, a, t, i), s = this.findAllIdsFromConnectivity(n);
-      this.createLabelLookup(e, s).then((h) => {
+        a = b(n.axons), n.somas && n.somas.length > 0 && t.push(...n.somas), n.dendrites && n.dendrites.length > 0 && t.push(...n.dendrites), t = b(t), l = n.somas;
+      const s = this.findComponents(n, a, t, l), i = this.findAllIdsFromConnectivity(n);
+      this.createLabelLookup(e, i).then((h) => {
         this.origins = t.map(
           (o) => this.createLabelFromNeuralNode(o, h)
-        ).sort(A), this.components = l.map(
+        ).sort(F), this.components = s.map(
           (o) => this.createLabelFromNeuralNode(o, h)
-        ).sort(A), this.destinations = a.map(
+        ).sort(F), this.destinations = a.map(
           (o) => this.createLabelFromNeuralNode(o, h)
-        ).sort(A), this.flattenAndFindDatasets(t, l, a), r({
+        ).sort(F), this.flattenAndFindDatasets(t, s, a), r({
           ids: {
             dendrites: t,
-            components: l,
+            components: s,
             axons: a
           },
           labels: {
@@ -310,13 +310,13 @@ let S = function() {
     });
     if (!a.ok)
       throw new Error(`Cannot access ${r}`);
-    const i = await a.json();
-    if ("error" in i)
-      throw new TypeError(i.error);
-    return i.values;
+    const l = await a.json();
+    if ("error" in l)
+      throw new TypeError(l.error);
+    return l.values;
   };
 };
-const I = [
+const S = [
   {
     id: 0,
     nerve_id: "ILX:0793723",
@@ -1129,50 +1129,50 @@ const I = [
     "FMA subclasses (in human nerves)": ["FMA:6892", "FMA:6893"],
     "subclass labels": ["Right T9 grey ramus communicans", "Left T9 grey ramus communicans"]
   }
-], D = () => {
+], U = () => {
   const e = {};
-  return I.forEach((n) => {
+  return S.forEach((n) => {
     const r = n.nerve_id, t = n.label.toLowerCase(), a = n["subclass labels"];
     if (r && t !== "nerve") {
       if (!a.length)
         return;
       r in e || (e[r] = {});
-      const i = a.map((l) => l.toLowerCase()).sort();
+      const l = a.map((s) => s.toLowerCase()).sort();
       e[r] = {
         nerve: t,
-        subNerves: i
+        subNerves: l
       };
     }
   }), e;
-}, $ = () => {
+}, k = () => {
   let e = [], n = {
     key: "scaffold.connectivity.nerve",
     label: "Nerves",
     children: []
   }, r = [];
-  for (const t of I) {
+  for (const t of S) {
     if (t.label === "nerve")
       continue;
     let a = {
       facetPropPath: "scaffold.connectivity.nerve",
       label: "",
       children: []
-    }, i = [];
-    for (const [l, s] of Object.entries(t))
-      if (l === "label" && (a.label = s), l === "subclass labels")
-        for (const h of s)
-          i.push({
+    }, l = [];
+    for (const [s, i] of Object.entries(t))
+      if (s === "label" && (a.label = i), s === "subclass labels")
+        for (const h of i)
+          l.push({
             facetPropPath: "scaffold.connectivity.subnerve",
             label: h
           });
-    i.length && (a.children = i.sort((l, s) => l.label.localeCompare(s.label)), r.push(a));
+    l.length && (a.children = l.sort((s, i) => s.label.localeCompare(i.label)), r.push(a));
   }
   return r.length && (n.children = r.sort((t, a) => t.label.localeCompare(a.label)), e.push(n)), e;
 };
-function H(e) {
+function D(e) {
   return e[0].toUpperCase() + e.substring(1);
 }
-const K = {
+const J = {
   emits: ["flatmap-provenance-ready", "resource-selected", "species-changed"],
   props: {
     /**
@@ -1191,7 +1191,7 @@ const K = {
   },
   inject: ["showGlobalSettings", "showOpenMapButton"],
   computed: {
-    ...k(E, O, N, x),
+    ...X(_, E, O, N),
     idNamePair() {
       return this.splitFlowStore.idNamePair;
     },
@@ -1213,7 +1213,7 @@ const K = {
     this.alive = !1;
   },
   mounted: function() {
-    this.multiflatmapRef = this.$refs.multiflatmap, this.flatmapRef = this.$refs.flatmap, this.scaffoldRef = this.$refs.scaffold, this.iframeRef = this.$refs.iframe, this.plotRef = this.$refs.plot, this.simulationRef = this.$refs.simulation, (this.scaffoldRef || this.iframeRef || this.plotRef || this.simulationRef) && this.loadExplorerConfig(), this.connectivityKnowledge = this.connectivitiesStore.globalConnectivities, this.connectivityFilterOptions = this.connectivitiesStore.filterOptions, this.connectivityFilterSources = this.connectivitiesStore.filterSources;
+    this.multiflatmapRef = A(this.$refs.multiflatmap), this.flatmapRef = A(this.$refs.flatmap), this.iframeRef = A(this.$refs.iframe), this.plotRef = A(this.$refs.plot), this.simulationRef = A(this.$refs.simulation), (this.iframeRef || this.plotRef || this.simulationRef) && this.loadExplorerConfig(), this.connectivityKnowledge = this.connectivitiesStore.globalConnectivities, this.connectivityFilterOptions = this.connectivitiesStore.filterOptions, this.connectivityFilterSources = this.connectivitiesStore.filterSources;
   },
   methods: {
     toggleMinimap: function(e, n) {
@@ -1223,8 +1223,8 @@ const K = {
         if (a)
           if (e === !0) {
             if (n === !1) {
-              const i = ((r = a.options) == null ? void 0 : r.minimap) || { position: "top-right" };
-              a.createMinimap(i), t.addResizeButtonToMinimap(), t.minimapSmall = !1;
+              const l = ((r = a.options) == null ? void 0 : r.minimap) || { position: "top-right" };
+              a.createMinimap(l), t.addResizeButtonToMinimap(), t.minimapSmall = !1;
             }
           } else
             a.closeMinimap();
@@ -1248,7 +1248,7 @@ const K = {
       this.settingsStore.updateMapManager(e);
     },
     trackOpenMap: function(e) {
-      M.sendEvent({
+      d.sendEvent({
         event: "interaction_event",
         event_name: "portal_maps_open_map",
         category: e,
@@ -1278,14 +1278,14 @@ const K = {
      * Callback when the vuers emit a selected event.
      */
     resourceSelected: function(e, n) {
-      var l, s, h, o;
+      var s, i, h, o;
       const r = n[0];
       if (this.resourceHasAction(r)) {
         m.emit("PopoverActionClick", r);
         return;
       }
       let t, a = !1;
-      const i = {
+      const l = {
         paneIndex: this.entry.id,
         type: e,
         resource: n,
@@ -1293,9 +1293,9 @@ const K = {
         eventType: void 0
       };
       if (e == "MultiFlatmap" || e == "Flatmap")
-        if (i.internalName = (l = r == null ? void 0 : r.feature) != null && l.label ? r.feature.label : this.idNamePair[r.feature.models], r.eventType == "click") {
-          if (i.eventType = "selected", r.feature.type == "marker") {
-            let u = i.internalName;
+        if (l.internalName = (s = r == null ? void 0 : r.feature) != null && s.label ? r.feature.label : this.idNamePair[r.feature.models], r.eventType == "click") {
+          if (l.eventType = "selected", r.feature.type == "marker") {
+            let u = l.internalName;
             if (this.settingsStore.isFeaturedMarkerIdentifier(r.feature.id))
               t = {
                 type: "Search",
@@ -1325,50 +1325,16 @@ const K = {
             }
             a = !0, e == "MultiFlatmap" && this.$refs.multiflatmap.getCurrentFlatmap().mapImp.clearSearchResults();
           }
-        } else r.eventType == "mouseenter" && (i.eventType = "highlighted", a = !0);
-      else e == "Scaffold" && (r && ((((s = r.data) == null ? void 0 : s.id) === void 0 || ((h = r.data) == null ? void 0 : h.id) === "") && (r.data.id = (o = r.data) == null ? void 0 : o.group), i.internalName = r.data.id, r.data.lastActionOnMarker === !0 && (t = {
+        } else r.eventType == "mouseenter" && (l.eventType = "highlighted", a = !0);
+      else e == "Scaffold" && (r && ((((i = r.data) == null ? void 0 : i.id) === void 0 || ((h = r.data) == null ? void 0 : h.id) === "") && (r.data.id = (o = r.data) == null ? void 0 : o.group), l.internalName = r.data.id, r.data.lastActionOnMarker === !0 && (t = {
         type: "Facet",
-        facets: [H(r.data.id)]
-      })), i.eventType = "selected", a = !0);
-      t && m.emit("PopoverActionClick", t), a && this.$emit("resource-selected", i);
+        facets: [D(r.data.id)]
+      })), l.eventType = "selected", a = !0);
+      t && m.emit("PopoverActionClick", t), a && this.$emit("resource-selected", l);
     },
     resourceHasAction: function(e) {
       return e && (e.type === "URL" || e.type === "Search" || e.type === "Neuron Search" || e.type == "Facet" || e.type == "Facets");
     },
-    /**
-     * Get the term to zoom/highlight in a synchronisation event,
-     * if it cannot be found in the map, it will perform several
-     * calls to try to ge a valid name/id.
-     */
-    getNameAndIdFromSyncData: async function(e) {
-      let n = e.internalName;
-      n === void 0 && e.resource && (n = e.resource.label);
-      let r;
-      if (e.resource && e.resource.resource && (r = e.resource.resource[0]), this.entry.type === "Scaffold") {
-        if (this.$refs.scaffold.findObjectsWithGroupName(n).length === 0) {
-          if (e.resource && e.resource.feature) {
-            const i = w(e.resource.feature.models);
-            if (i.length > 0) return i;
-          }
-          let a = X(n);
-          if (a)
-            return a;
-          if (r && e.eventType === "selected")
-            return fetch(`${this.apiLocation}get-related-terms/${r}`).then((i) => i.json()).then((i) => {
-              var l;
-              if (((l = i.uberon) == null ? void 0 : l.array.length) > 0)
-                return n = i.uberon.array[0].name.charAt(0).toUpperCase() + i.uberon.array[0].name.slice(1), r = i.uberon.array[0].id.toUpperCase(), { id: r, name: n };
-            });
-        }
-      } else if (this.entry.type === "MultiFlatmap")
-        if (n === "Bladder")
-          n = "Urinary Bladder";
-        else {
-          const t = w(n);
-          t.length > 0 && (n = t[0]);
-        }
-      return { id: r, name: n };
-    },
     // Get the species and andaotmy info for the featured datasets
     getDatasetAnatomyInfo: function(e) {
       fetch(`${this.apiLocation}dataset_info/anatomy?identifier=${e}`).then((n) => n.json()).then((n) => {
@@ -1385,21 +1351,21 @@ const K = {
         } catch {
           a = void 0;
         }
-        let i;
+        let l;
         try {
-          let l = 0, s = !1;
-          for (; !s && l < r.organisms.subject.length; ) {
-            const h = r.organisms.subject[l];
-            h.species && (i = h.species.name, s = !0), l += 1;
+          let s = 0, i = !1;
+          for (; !i && s < r.organisms.subject.length; ) {
+            const h = r.organisms.subject[s];
+            h.species && (l = h.species.name, i = !0), s += 1;
           }
         } catch {
-          i = void 0;
+          l = void 0;
         }
         this.settingsStore.updateFeaturedMarker({
           identifier: e,
           marker: t,
           doi: a,
-          species: i
+          species: l
         });
       });
     },
@@ -1414,19 +1380,19 @@ const K = {
       return !n.datasets || n.datasets.length == 0 ? !1 : n.datasets.map((r) => r.id);
     },
     flatmapResourceSelected: function(e, n) {
-      var l;
+      var s;
       this.resourceSelected(e, n);
-      const r = n[0], { eventType: t, feature: a } = r, { viewingMode: i } = this.settingsStore.globalSettings;
-      if (t === "click" && a.type === "feature" && ((l = a.models) != null && l.startsWith("ilxtr:"))) {
-        const s = [];
+      const r = n[0], { eventType: t, feature: a } = r, { viewingMode: l } = this.settingsStore.globalSettings;
+      if (t === "click" && a.type === "feature" && ((s = a.models) != null && s.startsWith("ilxtr:"))) {
+        const i = [];
         n.forEach((h) => {
           const { models: o } = h.feature;
-          s.push(o);
-        }), M.sendEvent({
+          i.push(o);
+        }), d.sendEvent({
           event: "interaction_event",
           event_name: "portal_maps_connectivity",
-          category: s.join(", "),
-          location: e + " " + i
+          category: i.join(", "),
+          location: e + " " + l
         });
       }
     },
@@ -1481,37 +1447,37 @@ const K = {
     },
     flatmapHighlight: async function(e, n, r, t) {
       let a = [...n, ...t];
-      const i = this.settingsStore.globalSettings;
-      if (i.highlightConnectedPaths) {
-        const l = n.length ? n : t.length ? t : [], s = await e.retrieveConnectedPaths(l);
-        s && a.push(...s);
+      const l = this.settingsStore.globalSettings;
+      if (l.highlightConnectedPaths) {
+        const s = n.length ? n : t.length ? t : [], i = await e.retrieveConnectedPaths(s);
+        i && a.push(...i);
       }
-      if (i.highlightDOIPaths) {
-        const l = await e.searchConnectivitiesByReference(r);
-        l && a.push(...l);
+      if (l.highlightDOIPaths) {
+        const s = await e.searchConnectivitiesByReference(r);
+        s && a.push(...s);
       }
       return a = [...new Set(a)], a;
     },
     sidebarHoverHighlight: function(e) {
       var n, r;
       if (this.visible && ((this.flatmapRef || this.multiflatmapRef) && this.flatmapReady || this.scaffoldRef && this.scaffoldLoaded)) {
-        const t = this.settingsStore.hoverAnatomies, a = this.settingsStore.hoverOrgans, i = this.settingsStore.hoverDOI, l = this.settingsStore.hoverConnectivity;
-        let s = null, h = null;
-        this.flatmapRef && (s = this.flatmapRef), this.multiflatmapRef && (s = this.multiflatmapRef.getCurrentFlatmap()), this.scaffoldRef && (h = this.scaffoldRef), clearTimeout(this.highlightDelay), !t.length && !a.length && !i && !l.length && ((this.multiflatmapRef || this.flatmapRef) && s ? s.mapImp && !s.mapImp.contextLost && ((n = s.mapImp) == null || n.clearSearchResults(), e.connectivityProcessed && ((r = s.mapImp) == null || r.setPaint({ dimmed: !0 }))) : this.scaffoldRef && h && h.changeHighlightedByName(a, "", !1)), this.highlightDelay = setTimeout(() => {
-          (t.length || a.length || i || l.length) && ((this.multiflatmapRef || this.flatmapRef) && s ? this.flatmapHighlight(s, t, i, l).then((o) => {
+        const t = this.settingsStore.hoverAnatomies, a = this.settingsStore.hoverOrgans, l = this.settingsStore.hoverDOI, s = this.settingsStore.hoverConnectivity;
+        let i = null, h = null;
+        this.flatmapRef && (i = this.flatmapRef), this.multiflatmapRef && (i = this.multiflatmapRef.getCurrentFlatmap()), this.scaffoldRef && (h = this.scaffoldRef), clearTimeout(this.highlightDelay), !t.length && !a.length && !l && !s.length && ((this.multiflatmapRef || this.flatmapRef) && i ? i.mapImp && !i.mapImp.contextLost && ((n = i.mapImp) == null || n.clearSearchResults(), e.connectivityProcessed && ((r = i.mapImp) == null || r.setPaint({ dimmed: !0 }))) : this.scaffoldRef && h && h.changeHighlightedByName(a, "", !1)), this.highlightDelay = setTimeout(() => {
+          (t.length || a.length || l || s.length) && ((this.multiflatmapRef || this.flatmapRef) && i ? this.flatmapHighlight(i, t, l, s).then((o) => {
             try {
-              s.showConnectivityTooltips({
+              i.showConnectivityTooltips({
                 connectivityInfo: { featureId: o },
                 data: []
               });
             } catch (u) {
-              if (console.log(u), l.length && s.mapImp) {
-                const c = s.mapImp.uuid;
+              if (console.log(u), s.length && i.mapImp) {
+                const c = i.mapImp.uuid;
                 o.every(
                   (f) => this.connectivityKnowledge[c].some(
                     (p) => p.id === f
                   )
-                ) || s.mapImp && !s.mapImp.contextLost && s.mapImp.clearSearchResults();
+                ) || i.mapImp && !i.mapImp.contextLost && i.mapImp.clearSearchResults();
               }
             }
           }) : this.scaffoldRef && h && h.changeHighlightedByName(a, "", !1));
@@ -1551,16 +1517,16 @@ const K = {
       this.flatmapService = await this.mockUpFlatmapService(), this.loadConnectivityExplorerConfig(this.flatmapService);
     },
     mockUpFlatmapService: async function() {
-      const r = (await (await fetch(this.flatmapAPI)).json()).filter((u) => u.id === "human-flatmap_male").sort((u, c) => c.created.localeCompare(u.created))[0], t = r.uuid, a = r.sckan["knowledge-source"], l = await (await fetch(`${this.flatmapAPI}/flatmap/${t}/pathways`)).json();
-      this.flatmapQueries = y(new S()), this.flatmapQueries.initialise(this.flatmapAPI);
-      const s = {
+      const r = (await (await fetch(this.flatmapAPI)).json()).filter((u) => u.id === "human-flatmap_male").sort((u, c) => c.created.localeCompare(u.created))[0], t = r.uuid, a = r.sckan["knowledge-source"], s = await (await fetch(`${this.flatmapAPI}/flatmap/${t}/pathways`)).json();
+      this.flatmapQueries = A(new T()), this.flatmapQueries.initialise(this.flatmapAPI);
+      const i = {
         mapMetadata: {
           uuid: t,
           connectivity: {
             ...r.sckan
           }
         },
-        pathways: l,
+        pathways: s,
         resource: this.entry.resource,
         knowledgeSource: a,
         queryKnowledge: async (u) => {
@@ -1570,50 +1536,50 @@ const K = {
         queryLabels: async (u) => {
           const c = `select source, entity, knowledge from knowledge where (source=? or source is null) and entity in (?${", ?".repeat(u.length - 1)}) order by entity, source desc`, v = [a, ...u], f = await this.flatmapQueries.queryKnowledge(c, v), p = [];
           let g;
-          for (const F of f)
-            if (F[1] !== g) {
-              const C = JSON.parse(F[2]);
+          for (const M of f)
+            if (M[1] !== g) {
+              const I = JSON.parse(M[2]);
               p.push({
-                entity: F[1],
-                label: C.label || F[1]
-              }), g = F[1];
+                entity: M[1],
+                label: I.label || M[1]
+              }), g = M[1];
             }
           return p;
         }
-      }, h = $();
+      }, h = k();
       return {
         mockup: !0,
         getFilterOptions: async (u, c) => {
-          const f = await U(this.flatmapAPI, u, c, void 0);
+          const f = await B(this.flatmapAPI, u, c, void 0);
           return [...h, ...f];
         },
-        getTermNerveMaps: D,
-        mapImp: s
+        getTermNerveMaps: U,
+        mapImp: i
       };
     },
     loadConnectivityExplorerConfig: async function(e) {
-      var i;
+      var l;
       const n = e.mapImp, r = R(n), t = e.mockup ? n.resource : n.uuid;
       let a = [];
       if (!this.connectivityKnowledge[r]) {
-        this.flatmapQueries = y(new S()), this.flatmapQueries.initialise(this.flatmapAPI);
-        const l = await B(n, this.flatmapQueries);
-        this.connectivityKnowledge[r] = l.filter((s) => {
+        this.flatmapQueries = A(new T()), this.flatmapQueries.initialise(this.flatmapAPI);
+        const s = await P(n, this.flatmapQueries);
+        this.connectivityKnowledge[r] = s.filter((i) => {
           var h;
-          return (h = s.connectivity) == null ? void 0 : h.length;
-        }).sort((s, h) => s.label.localeCompare(h.label));
+          return (h = i.connectivity) == null ? void 0 : h.length;
+        }).sort((i, h) => i.label.localeCompare(h.label));
       }
       if (!this.connectivityKnowledge[t]) {
-        const l = ((i = n.pathways) == null ? void 0 : i.paths) || {};
-        this.connectivityKnowledge[t] = this.connectivityKnowledge[r].filter((s) => s.id in l);
+        const s = ((l = n.pathways) == null ? void 0 : l.paths) || {};
+        this.connectivityKnowledge[t] = this.connectivityKnowledge[r].filter((i) => i.id in s);
       }
       if (!this.connectivityFilterOptions[t] && !e.mockup && (this.connectivityFilterOptions[t] = await e.getFilterOptions(n, this.connectivityKnowledge[t])), e.mockup) {
-        const l = e.getTermNerveMaps() || {}, s = JSON.parse(JSON.stringify(this.connectivityKnowledge[t]));
-        this.connectivityKnowledge[t] = s.map((o) => {
+        const s = e.getTermNerveMaps() || {}, i = JSON.parse(JSON.stringify(this.connectivityKnowledge[t]));
+        this.connectivityKnowledge[t] = i.map((o) => {
           var c;
           let u = o;
           if ((c = o.nerves) != null && c.length) {
-            const f = o.nerves.flat(1 / 0).reduce((p, g) => (g in l && p.push(l[g]), p), []);
+            const f = o.nerves.flat(1 / 0).reduce((p, g) => (g in s && p.push(s[g]), p), []);
             f != null && f.length && (a.push(...f), u["nerve-label"] = f.sort((p, g) => p.nerve.localeCompare(g.nerve)));
           }
           return u;
@@ -1648,18 +1614,18 @@ const K = {
       this.tooltipEntry = await Promise.all(n), this.tooltipEntry.map((t) => t.featureId[0]).length > 0 && m.emit("connectivity-info-open", this.tooltipEntry);
     },
     changeConnectivitySource: async function(e, n) {
-      var i, l;
-      const { entry: r, connectivitySource: t } = e, a = (l = (i = this == null ? void 0 : this.flatmapService) == null ? void 0 : i.mapImp) == null ? void 0 : l.mapMetadata.uuid;
-      n.includes(a) || (n.push(a), await this.flatmapQueries.queryForConnectivityNew(this.flatmapService.mapImp, r.featureId[0], t), this.tooltipEntry = this.tooltipEntry.map((s) => s.featureId[0] === r.featureId[0] ? this.flatmapQueries.updateTooltipData(s) : s), m.emit("connectivity-info-open", this.tooltipEntry));
+      var l, s;
+      const { entry: r, connectivitySource: t } = e, a = (s = (l = this == null ? void 0 : this.flatmapService) == null ? void 0 : l.mapImp) == null ? void 0 : s.mapMetadata.uuid;
+      n.includes(a) || (n.push(a), await this.flatmapQueries.queryForConnectivityNew(this.flatmapService.mapImp, r.featureId[0], t), this.tooltipEntry = this.tooltipEntry.map((i) => i.featureId[0] === r.featureId[0] ? this.flatmapQueries.updateTooltipData(i) : i), m.emit("connectivity-info-open", this.tooltipEntry));
     },
     trackEvent: function(e) {
-      M.sendEvent(e);
+      d.sendEvent(e);
     }
   },
   data: function() {
     return {
       apiLocation: void 0,
-      activeSpecies: P,
+      activeSpecies: x,
       scaffoldCamera: void 0,
       mainStyle: {
         height: this.entry.datasetTitle ? "calc(100% - 30px)" : "100%",
@@ -1672,6 +1638,9 @@ const K = {
       multiflatmapRef: null,
       flatmapRef: null,
       scaffoldRef: null,
+      iframeRef: null,
+      plotRef: null,
+      simulationRef: null,
       scaffoldLoaded: !1,
       isInHelp: !1,
       mapManager: void 0,
@@ -1695,5 +1664,5 @@ const K = {
   }
 };
 export {
-  K as C
+  J as C
 };