@abi-software/mapintegratedvuer 1.13.1 → 1.14.0-beta.1

package/dist/{ContentMixin-Cf4ti-Vc.js → ContentMixin-DmlrCRP2.js}

@@ -1,5 +1,5 @@
 import { markRaw as y } from "vue";
-import { c as C, u as E, d as O, e as N, E as f, T as b, f as R, h as x, i as w, l as P, J as B } from "./index-CDhuA6QJ.js";
+import { c as C, u as E, d as O, e as N, E as f, T as b, f as R, h as x, i as w, l as P, J as B } from "./index-DXxujskE.js";
 import { mapStores as X } from "pinia";
 const M = function(e) {
   return e ? [...new Set(e.map((r) => JSON.stringify(r)))].map(
@@ -1291,12 +1291,6 @@ const K = {
     resourceHasAction: function(e) {
       return e && (e.type === "URL" || e.type === "Search" || e.type === "Neuron Search" || e.type == "Facet" || e.type == "Facets");
     },
-    /**
-     * Check if this viewer is currently visible
-     */
-    isVisible: function() {
-      return this.splitFlowStore.getPaneNameById(this.entry.id) !== void 0;
-    },
     /**
      * Get the term to zoom/highlight in a synchronisation event,
      * if it cannot be found in the map, it will perform several
@@ -1459,7 +1453,7 @@ const K = {
       if (this.visible && ((this.flatmapRef || this.multiflatmapRef) && this.flatmapReady || this.scaffoldRef && this.scaffoldLoaded)) {
         const n = this.settingsStore.hoverAnatomies, a = this.settingsStore.hoverOrgans, i = this.settingsStore.hoverDOI, s = this.settingsStore.hoverConnectivity;
         let l = null, o = null;
-        this.flatmapRef && (l = this.flatmapRef), this.multiflatmapRef && (l = this.multiflatmapRef.getCurrentFlatmap()), this.scaffoldRef && (o = this.scaffoldRef), clearTimeout(this.highlightDelay), !n.length && !a.length && !i && !s.length && ((this.multiflatmapRef || this.flatmapRef) && l ? ((r = l.mapImp) == null || r.clearSearchResults(), e.connectivityProcessed && ((t = l.mapImp) == null || t.setPaint({ dimmed: !0 }))) : this.scaffoldRef && o && o.changeHighlightedByName(a, "", !1)), this.highlightDelay = setTimeout(() => {
+        this.flatmapRef && (l = this.flatmapRef), this.multiflatmapRef && (l = this.multiflatmapRef.getCurrentFlatmap()), this.scaffoldRef && (o = this.scaffoldRef), clearTimeout(this.highlightDelay), !n.length && !a.length && !i && !s.length && ((this.multiflatmapRef || this.flatmapRef) && l ? l.mapImp && !l.mapImp.contextLost && ((r = l.mapImp) == null || r.clearSearchResults(), e.connectivityProcessed && ((t = l.mapImp) == null || t.setPaint({ dimmed: !0 }))) : this.scaffoldRef && o && o.changeHighlightedByName(a, "", !1)), this.highlightDelay = setTimeout(() => {
           (n.length || a.length || i || s.length) && ((this.multiflatmapRef || this.flatmapRef) && l ? this.flatmapHighlight(l, n, i, s).then((c) => {
             try {
               l.showConnectivityTooltips({
@@ -1473,7 +1467,7 @@ const K = {
                   (v) => this.connectivityKnowledge[h].some(
                     (p) => p.id === v
                   )
-                ) || l.mapImp.clearSearchResults();
+                ) || l.mapImp && !l.mapImp.contextLost && l.mapImp.clearSearchResults();
               }
             }
           }) : this.scaffoldRef && o && o.changeHighlightedByName(a, "", !1));

package/dist/{Flatmap-DRaM5H0L.js → Flatmap-DVR5AvMW.js}

@@ -1,6 +1,6 @@
-import { _ as c, q as d, E as l, T as h } from "./index-CDhuA6QJ.js";
-import { C as u } from "./ContentMixin-Cf4ti-Vc.js";
-import { D as y } from "./style-BeNQcAFm.js";
+import { _ as d, q as c, E as l, T as h } from "./index-DXxujskE.js";
+import { C as u } from "./ContentMixin-DmlrCRP2.js";
+import { D as y } from "./style-DPQ3bolR.js";
 import { FlatmapVuer as g } from "@abi-software/flatmapvuer";
 import { resolveComponent as r, openBlock as p, createElementBlock as M, createVNode as C, createBlock as v, createCommentVNode as S } from "vue";
 const w = {
@@ -8,7 +8,7 @@ const w = {
   mixins: [u, y],
   components: {
     FlatmapVuer: g,
-    HelpModeDialog: d
+    HelpModeDialog: c
   },
   data: function() {
     return {
@@ -31,6 +31,9 @@ const w = {
       var e;
       return (e = this.$refs.flatmap) == null ? void 0 : e.mapImp;
     },
+    contextRestored(e) {
+      this.flatmapReadyForMarkerUpdates(e), this.updateViewerSettings();
+    },
     flatmapReadyCall: function(e) {
       var n, i, o;
       this.flatmapReady = !0;
@@ -164,11 +167,13 @@ function F(e, t, a, n, i, o) {
       connectivityInfoSidebar: e.connectivityInfoSidebar,
       pathControls: !0,
       ref: "flatmap",
+      onContextRestored: o.contextRestored,
       onReady: o.flatmapReadyCall,
       displayMinimap: e.displayMinimap,
       displayWarning: !0,
       enableOpenMapUI: !0,
       flatmapAPI: e.flatmapAPI,
+      render: e.visible,
       sparcAPI: e.apiLocation,
       showLocalSettings: e.showLocalSettings,
       showOpenMapButton: e.showOpenMapButton,
@@ -177,7 +182,7 @@ function F(e, t, a, n, i, o) {
       onMapmanagerLoaded: e.onMapmanagerLoaded,
       showPathwayFilter: !1,
       onTrackEvent: e.trackEvent
-    }, null, 8, ["state", "entry", "mapManager", "onPanZoomCallback", "name", "minZoom", "helpMode", "helpModeActiveItem", "helpModeDialog", "onHelpModeLastItem", "onShownTooltip", "onShownMapTooltip", "onAnnotationOpen", "onAnnotationClose", "onUpdateOfflineAnnotationEnabled", "annotationSidebar", "onConnectivityInfoOpen", "onConnectivityError", "onConnectivityInfoClose", "onNeuronConnectionFeatureClick", "connectivityInfoSidebar", "onReady", "displayMinimap", "flatmapAPI", "sparcAPI", "showLocalSettings", "showOpenMapButton", "onOpenMap", "onPathwaySelectionChanged", "onMapmanagerLoaded", "onTrackEvent"]),
+    }, null, 8, ["state", "entry", "mapManager", "onPanZoomCallback", "name", "minZoom", "helpMode", "helpModeActiveItem", "helpModeDialog", "onHelpModeLastItem", "onShownTooltip", "onShownMapTooltip", "onAnnotationOpen", "onAnnotationClose", "onUpdateOfflineAnnotationEnabled", "annotationSidebar", "onConnectivityInfoOpen", "onConnectivityError", "onConnectivityInfoClose", "onNeuronConnectionFeatureClick", "connectivityInfoSidebar", "onContextRestored", "onReady", "displayMinimap", "flatmapAPI", "render", "sparcAPI", "showLocalSettings", "showOpenMapButton", "onOpenMap", "onPathwaySelectionChanged", "onMapmanagerLoaded", "onTrackEvent"]),
     e.helpMode && e.useHelpModeDialog ? (p(), v(f, {
       key: 0,
       ref: "flatmapHelp",
@@ -188,7 +193,7 @@ function F(e, t, a, n, i, o) {
     }, null, 8, ["flatmapRef", "lastItem", "onShowNext", "onFinishHelpMode"])) : S("", !0)
   ]);
 }
-const T = /* @__PURE__ */ c(w, [["render", F], ["__scopeId", "data-v-be4a55a2"]]);
+const $ = /* @__PURE__ */ d(w, [["render", F], ["__scopeId", "data-v-663c1997"]]);
 export {
-  T as default
+  $ as default
 };

package/dist/{Iframe-DMyBLdD3.js → Iframe-BXJW4NYO.js}

@@ -1,6 +1,6 @@
-import { C as r } from "./ContentMixin-Cf4ti-Vc.js";
+import { C as r } from "./ContentMixin-DmlrCRP2.js";
 import { openBlock as o, createElementBlock as t, createElementVNode as a } from "vue";
-import { _ as s } from "./index-CDhuA6QJ.js";
+import { _ as s } from "./index-DXxujskE.js";
 const n = {
   name: "Iframe",
   mixins: [r]

package/dist/{MultiFlatmap-CgvcY__u.js → MultiFlatmap-COr8kB5K.js}

@@ -1,7 +1,7 @@
-import { _ as c, q as h, a as g, T as r, E as l } from "./index-CDhuA6QJ.js";
-import { C as M } from "./ContentMixin-Cf4ti-Vc.js";
-import { D as y } from "./style-BeNQcAFm.js";
-import { MultiFlatmapVuer as C } from "@abi-software/flatmapvuer";
+import { _ as c, q as h, a as g, T as r, E as l } from "./index-DXxujskE.js";
+import { C as M } from "./ContentMixin-DmlrCRP2.js";
+import { D as C } from "./style-DPQ3bolR.js";
+import { MultiFlatmapVuer as y } from "@abi-software/flatmapvuer";
 import { resolveComponent as p, openBlock as m, createElementBlock as v, createVNode as S, createBlock as I, createCommentVNode as F } from "vue";
 const w = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><path d="M11.0748 3.25583C11.4141 2.42845 12.5859 2.42845 12.9252 3.25583L14.6493 7.45955C14.793 7.80979 15.1221 8.04889 15.4995 8.07727L20.0303 8.41798C20.922 8.48504 21.2841 9.59942 20.6021 10.1778L17.1369 13.1166C16.8482 13.3614 16.7225 13.7483 16.8122 14.1161L17.8882 18.5304C18.1 19.3992 17.152 20.0879 16.3912 19.618L12.5255 17.2305C12.2034 17.0316 11.7966 17.0316 11.4745 17.2305L7.60881 19.618C6.84796 20.0879 5.90001 19.3992 6.1118 18.5304L7.18785 14.1161C7.2775 13.7483 7.1518 13.3614 6.86309 13.1166L3.3979 10.1778C2.71588 9.59942 3.07796 8.48504 3.96971 8.41798L8.50046 8.07727C8.87794 8.04889 9.20704 7.80979 9.35068 7.45955L11.0748 3.25583Z" stroke="#000000" stroke-width="2"/></svg>', f = (e) => [
   {
@@ -18,19 +18,20 @@ const w = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
   }
 ], k = {
   name: "MultiFlatmap",
-  mixins: [M, y],
+  mixins: [M, C],
   components: {
-    MultiFlatmapVuer: C,
+    MultiFlatmapVuer: y,
     HelpModeDialog: h
   },
   data: function() {
     return {
-      zoomLevel: 6,
-      flatmapReady: !1,
       availableSpecies: g(),
+      flatmapReady: !1,
       scaffoldResource: {},
       showStarInLegend: !1,
-      openMapOptions: f()
+      speciesHasChanged: !1,
+      openMapOptions: f(),
+      zoomLevel: 6
     };
   },
   methods: {
@@ -61,9 +62,9 @@ const w = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
       const a = this.$refs.multiflatmap.getCurrentFlatmap();
       if (e && a.mapImp) {
         const n = a.mapImp.search(e);
-        (n.__featureIds || n.featureIds).forEach((s) => {
-          const o = a.mapImp.annotation(s);
-          o && o.label && t.push(o.label);
+        (n.__featureIds || n.featureIds).forEach((o) => {
+          const s = a.mapImp.annotation(o);
+          s && s.label && t.push(s.label);
         });
       }
     },
@@ -89,7 +90,7 @@ const w = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
     },
     zoomToFeatures: function(e, t) {
       let a = e.name;
-      const n = this.$refs.multiflatmap.getCurrentFlatmap().mapImp;
+      const n = this.getFlatmapImp();
       if (a) {
         const i = n.search(a);
         i.featureIds.length > 0 ? (t && n.selectFeatures(i.featureIds), n.zoomToFeatures(i.featureIds)) : n.clearSearchResults();
@@ -103,10 +104,13 @@ const w = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
         l.emit("mapImpProv", t), this.$emit("flatmap-provenance-ready", t);
       }
     },
+    contextRestored: function(e) {
+      e && (this.flatmapMarkerUpdate(e.mapImp), this.updateViewerSettings(), this.speciesHasChanged && (this.speciesHasChanged = !1, this.$emit("species-changed", this.activeSpecies)));
+    },
     flatmapChanged: async function(e) {
       this.activeSpecies = e, this.openMapOptions = f();
       const t = this.getFlatmapImp();
-      t && (this.updateProvCard(), this.flatmapMarkerUpdate(t), this.updateViewerSettings()), this.$emit("species-changed", e), r.sendEvent({
+      this.updateProvCard(), t && (t.contextLost ? this.speciesHasChanged = !0 : (this.flatmapMarkerUpdate(t), this.updateViewerSettings(), this.speciesHasChanged = !1, this.$emit("species-changed", e))), r.sendEvent({
         event: "interaction_event",
         event_name: "portal_maps_species_change",
         category: this.activeSpecies
@@ -151,16 +155,16 @@ const w = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
         return !1;
       let i = a;
       if (i || (i = this.getFlatmapImp()), i) {
-        let s = document.createElement("div");
-        s.innerHTML = w;
-        const o = i.addMarker(e, {
-          element: s,
+        let o = document.createElement("div");
+        o.innerHTML = w;
+        const s = i.addMarker(e, {
+          element: o,
           className: "highlight-marker",
           cluster: !1
         });
         return this.settingsStore.updateFeaturedMarkerIdentifier({
           index: t,
-          markerIdentifier: o
+          markerIdentifier: s
         }), !0;
       }
       return !1;
@@ -199,11 +203,11 @@ const w = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
         flightPathDisplay: a,
         organsDisplay: n,
         outlinesDisplay: i,
-        connectionType: s
+        connectionType: o
       } = this.settingsStore.globalSettings;
       if (this.flatmapReady) {
-        const o = this.$refs.multiflatmap.getCurrentFlatmap();
-        o.changeViewingMode(t), o.setFlightPath3D(a), o.setColour(n), o.setOutlines(i), o.backgroundChangeCallback(e), o.setConnectionType(s);
+        const s = this.$refs.multiflatmap.getCurrentFlatmap();
+        s.changeViewingMode(t), s.setFlightPath3D(a), s.setColour(n), s.setOutlines(i), s.backgroundChangeCallback(e), s.setConnectionType(o);
       }
     },
     setVisibilityFilter: function(e) {
@@ -239,13 +243,14 @@ const w = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
     this.getFeaturedDatasets();
   }
 }, b = { class: "viewer-container" };
-function L(e, t, a, n, i, s) {
-  const o = p("MultiFlatmapVuer"), d = p("HelpModeDialog");
+function R(e, t, a, n, i, o) {
+  const s = p("MultiFlatmapVuer"), d = p("HelpModeDialog");
   return m(), v("div", b, [
-    S(o, {
+    S(s, {
       availableSpecies: e.availableSpecies,
-      onFlatmapChanged: s.flatmapChanged,
-      onReady: s.multiFlatmapReady,
+      onContextRestored: o.contextRestored,
+      onFlatmapChanged: o.flatmapChanged,
+      onReady: o.multiFlatmapReady,
       state: e.entry.state,
       mapManager: e.mapManager,
       onResourceSelected: t[0] || (t[0] = (u) => e.flatmapResourceSelected(e.entry.type, u)),
@@ -267,23 +272,24 @@ function L(e, t, a, n, i, s) {
       onNeuronConnectionFeatureClick: e.onNeuronConnectionFeatureClick,
       connectivityInfoSidebar: e.connectivityInfoSidebar,
       ref: "multiflatmap",
-      displayMinimap: s.displayMinimap,
+      displayMinimap: o.displayMinimap,
       showStarInLegend: e.showStarInLegend,
       enableOpenMapUI: !0,
       openMapOptions: e.openMapOptions,
       flatmapAPI: e.flatmapAPI,
+      render: e.visible,
       sparcAPI: e.apiLocation,
       showLocalSettings: e.showLocalSettings,
       showOpenMapButton: e.showOpenMapButton,
-      onPanZoomCallback: s.flatmapPanZoomCallback,
+      onPanZoomCallback: o.flatmapPanZoomCallback,
       onOpenMap: e.openMap,
       onFinishHelpMode: e.endHelp,
-      onPathwaySelectionChanged: s.onPathwaySelectionChanged,
-      onOpenPubmedUrl: s.onOpenPubmedUrl,
+      onPathwaySelectionChanged: o.onPathwaySelectionChanged,
+      onOpenPubmedUrl: o.onOpenPubmedUrl,
       onMapmanagerLoaded: e.onMapmanagerLoaded,
       showPathwayFilter: !1,
       onTrackEvent: e.trackEvent
-    }, null, 8, ["availableSpecies", "onFlatmapChanged", "onReady", "state", "mapManager", "initial", "helpMode", "helpModeActiveItem", "helpModeDialog", "onHelpModeLastItem", "onShownTooltip", "onShownMapTooltip", "onAnnotationOpen", "onAnnotationClose", "onUpdateOfflineAnnotationEnabled", "annotationSidebar", "onConnectivityInfoOpen", "onConnectivityError", "onConnectivityInfoClose", "onNeuronConnectionFeatureClick", "connectivityInfoSidebar", "displayMinimap", "showStarInLegend", "openMapOptions", "flatmapAPI", "sparcAPI", "showLocalSettings", "showOpenMapButton", "onPanZoomCallback", "onOpenMap", "onFinishHelpMode", "onPathwaySelectionChanged", "onOpenPubmedUrl", "onMapmanagerLoaded", "onTrackEvent"]),
+    }, null, 8, ["availableSpecies", "onContextRestored", "onFlatmapChanged", "onReady", "state", "mapManager", "initial", "helpMode", "helpModeActiveItem", "helpModeDialog", "onHelpModeLastItem", "onShownTooltip", "onShownMapTooltip", "onAnnotationOpen", "onAnnotationClose", "onUpdateOfflineAnnotationEnabled", "annotationSidebar", "onConnectivityInfoOpen", "onConnectivityError", "onConnectivityInfoClose", "onNeuronConnectionFeatureClick", "connectivityInfoSidebar", "displayMinimap", "showStarInLegend", "openMapOptions", "flatmapAPI", "render", "sparcAPI", "showLocalSettings", "showOpenMapButton", "onPanZoomCallback", "onOpenMap", "onFinishHelpMode", "onPathwaySelectionChanged", "onOpenPubmedUrl", "onMapmanagerLoaded", "onTrackEvent"]),
     e.helpMode && e.useHelpModeDialog ? (m(), I(d, {
       key: 0,
       ref: "multiflatmapHelp",
@@ -294,7 +300,7 @@ function L(e, t, a, n, i, s) {
     }, null, 8, ["multiflatmapRef", "lastItem", "onShowNext", "onFinishHelpMode"])) : F("", !0)
   ]);
 }
-const T = /* @__PURE__ */ c(k, [["render", L], ["__scopeId", "data-v-f14fe234"]]);
+const E = /* @__PURE__ */ c(k, [["render", R], ["__scopeId", "data-v-804bf753"]]);
 export {
-  T as default
+  E as default
 };

package/dist/{Plot-BDAChTio.js → Plot-CUaTY2PK.js}

@@ -1,7 +1,7 @@
 import { PlotVuer as o } from "@abi-software/plotvuer";
-import { C as r } from "./ContentMixin-Cf4ti-Vc.js";
+import { C as r } from "./ContentMixin-DmlrCRP2.js";
 import { resolveComponent as a, openBlock as n, createBlock as s } from "vue";
-import { _ as p } from "./index-CDhuA6QJ.js";
+import { _ as p } from "./index-DXxujskE.js";
 const l = {
   name: "Plot",
   mixins: [r],

package/dist/{Scaffold-CXo37tTA.js → Scaffold-DKZWi802.js}

@@ -1,5 +1,5 @@
-import { _ as g, q as m, g as v, b as y, E as c } from "./index-CDhuA6QJ.js";
-import { C as w } from "./ContentMixin-Cf4ti-Vc.js";
+import { _ as g, q as m, g as v, b as y, E as c } from "./index-DXxujskE.js";
+import { C as w } from "./ContentMixin-DmlrCRP2.js";
 import { ScaffoldVuer as b } from "@abi-software/scaffoldvuer";
 import { resolveComponent as p, openBlock as u, createElementBlock as S, createVNode as M, createBlock as $, createCommentVNode as C } from "vue";
 const N = {
@@ -138,7 +138,7 @@ const N = {
       Array.isArray(e) ? n = e : n = [e.name], t && this.$refs.scaffold.changeActiveByName(n, "", !1), this.$refs.scaffold.viewRegion(n);
     },
     scaffoldIsReady: function() {
-      this.scaffoldLoaded = !0, this.$refs.scaffold.$module.graphicsHighlight.highlightColour = [1, 0, 1], this.isVisible() && this.entry.rotation && this.entry.rotation, this.updateViewerSettings(), c.emit("mapLoaded", this.$refs.scaffold), setTimeout(() => {
+      this.scaffoldLoaded = !0, this.$refs.scaffold.$module.graphicsHighlight.highlightColour = [1, 0, 1], this.visible && this.entry.rotation && this.entry.rotation, this.updateViewerSettings(), c.emit("mapLoaded", this.$refs.scaffold), setTimeout(() => {
         this.setNerveGreyScale();
       }, 500);
     },
@@ -275,7 +275,7 @@ function L(e, t, n, o, s, i) {
     }, null, 8, ["scaffoldRef", "lastItem", "onShowNext", "onFinishHelpMode"])) : C("", !0)
   ]);
 }
-const H = /* @__PURE__ */ g(N, [["render", L], ["__scopeId", "data-v-c1c53a77"]]);
+const H = /* @__PURE__ */ g(N, [["render", L], ["__scopeId", "data-v-6dabbfee"]]);
 export {
   H as default
 };

package/dist/{Simulation-B4f-ubkl.js → Simulation-CegOKpGM.js}

@@ -1,7 +1,7 @@
-import { C as n } from "./ContentMixin-Cf4ti-Vc.js";
+import { C as n } from "./ContentMixin-DmlrCRP2.js";
 import { SimulationVuer as e } from "@abi-software/simulationvuer";
 import { resolveComponent as r, openBlock as a, createBlock as c } from "vue";
-import { _ as m } from "./index-CDhuA6QJ.js";
+import { _ as m } from "./index-DXxujskE.js";
 const s = {
   name: "Simulation",
   mixins: [n],