@abi-software/mapintegratedvuer 0.7.1-demo.0 → 0.7.2-vue3.0-alpha.0

package/src/mixins/ContentMixin.js

@@ -1,438 +1,438 @@
-import {
-  getAvailableTermsForSpecies,
-  getInteractiveAction,
-  getNerveNames,
-  getParentsRegion,
-} from "../components/SimulatedData.js";
-import EventBus from "../components/EventBus";
-import markerZoomLevels from "../components/markerZoomLevelsHardCoded.js";
-import { mapStores } from 'pinia';
-import { useSettingsStore } from '../stores/settings';
-import { useSplitFlowStore } from '../stores/splitFlow';
-
-function capitalise(text) {
-  return text[0].toUpperCase() + text.substring(1)
-}
-
-/* eslint-disable no-alert, no-console */
-export default {
-  props: {
-    /**
-     * Object containing information for
-     * the required viewing.
-     */
-    entry: Object,
-    visible: {
-      type: Boolean,
-      default: true,
-    },
-    mouseHovered: {
-      type: Boolean,
-      default: false,
-    },
-  },
-  computed: {
-    ...mapStores(useSettingsStore, useSplitFlowStore),
-    syncMode() {
-      return this.splitFlowStore.syncMode;
-    },
-  },
-  mounted: function () {
-    EventBus.on("startHelp", () => {
-      this.startHelp();
-    });
-  },
-  methods: {
-    toggleSyncMode: function () {
-      return;
-    },
-    getState: function () {
-      return undefined;
-    },
-    openMap: function (type) {
-      if (type === "SYNC") {
-        this.toggleSyncMode();
-      } else {
-        EventBus.emit("OpenNewMap", type);
-      }
-    },
-    updateWithViewUrl: function() {
-      return;
-    },
-    /**
-     * Perform a local search on this contentvuer
-     */
-    search: function () {
-      return false;
-    },
-    /**
-     * Get a list of search suggestions on this contentvuer
-     */
-    searchSuggestions: function () {
-      return;
-    },
-    /**
-     * Callback when the vuers emit a selected event.
-     */
-    resourceSelected: function (type, resource, augmented) {
-      // Skip processing if resources already has actions
-      if (this.resourceHasAction(resource)) {
-        EventBus.emit("PopoverActionClick", resource);
-        return;
-      }
-
-      let returnedAction = undefined;
-      let action = "none";
-      let fireResourceSelected = false;
-      const result = {
-        paneIndex: this.entry.id,
-        type: type,
-        resource: resource,
-        internalName: undefined,
-        eventType: undefined,
-      };
-
-      if (type == "MultiFlatmap" || type == "Flatmap") {
-        result.internalName = this.idNamePair[resource.feature.models];
-        if (resource.eventType == "click") {
-          result.eventType = "selected";
-          if (resource.feature.type == "marker") {
-            let label = this.idNamePair[resource.feature.models];
-            let hardcodedAnnotation = markerZoomLevels.filter(
-              mz => mz.id === resource.feature.models
-            );
-
-            if (
-              this.settingsStore.isFeaturedMarkerIdentifier(
-                resource.feature.id
-              )
-            ) {
-              // It is a featured dataset search for DOI.
-              returnedAction = {
-                type: "Search",
-                term: this.settingsStore.featuredMarkerDoi(
-                  resource.feature.id
-                ),
-              };
-            } else if (hardcodedAnnotation.filter(h => h.keyword).length > 0) {
-              // if it matches our stored keywords, it is a keyword search
-              // Keyword searches do not contain labels, so switch to keyword search if no label exists
-              returnedAction = {
-                type: "Search",
-                term:
-                  "http://purl.obolibrary.org/obo/" +
-                  resource.feature.models.replace(":", "_"),
-              };
-            } else {
-              // Facet search on anatomy if it is not a keyword search
-              returnedAction = {
-                type: "Facet",
-                facet: label,
-                facetPropPath: "anatomy.organ.category.name",
-                term: "Anatomical structure",
-              };
-            }
-
-            fireResourceSelected = true;
-            if (type == "MultiFlatmap") {
-              const flatmap =
-                this.$refs.multiflatmap.getCurrentFlatmap().mapImp;
-              flatmap.clearSearchResults();
-            }
-          } else if (resource.feature.type == "feature") {
-            // Do no open scaffold in sync map
-            if (this.syncMode) {
-              fireResourceSelected = true;
-            } else {
-              action = "scaffold";
-            }
-          }
-        } else if (resource.eventType == "mouseenter") {
-          result.eventType = "highlighted";
-          fireResourceSelected = true;
-        }
-      } else if (type == "Scaffold") {
-        if (resource && resource[0]) {
-          result.internalName = resource[0].data.id;
-          // Facet search if marker is clicked
-          if (resource[0].data.lastActionOnMarker === true) {
-            returnedAction = {
-              type: "Facet",
-              facet: capitalise(resource[0].data.id),
-              facetPropPath: "anatomy.organ.category.name",
-              term: "Anatomical structure",
-            };
-          }
-        }
-        result.eventType = "selected";
-        fireResourceSelected = true;
-        action = "search";
-      }
-      if ((returnedAction === undefined) && augmented) {
-        returnedAction = getInteractiveAction(result, action);
-      }
-      if (returnedAction) EventBus.emit("PopoverActionClick", returnedAction);
-      if (fireResourceSelected) this.$emit("resource-selected", result);
-    },
-    resourceHasAction: function (resource) {
-      return (
-        resource.type === "URL" ||
-        resource.type === "Search" ||
-        resource.type === "Neuron Search" ||
-        resource.type == "Facet" ||
-        resource.type == "Facets"
-      );
-    },
-    /**
-     * Check if this viewer is currently visible
-     */
-     isVisible: function() {
-      const paneName = this.splitFlowStore.getPaneNameById(this.entry.id);
-      return paneName !== undefined;
-    },
-    displayTooltip: function() {
-      return;
-    },
-    /**
-     * Get the term to zoom/highlight in a synchronisation event,
-     * if it cannot be found in the map, it will perform several
-     * calls to try to ge a valid name/id.
-     */
-    getNameAndIdFromSyncData: async function (data) {
-      let name = data.internalName;
-      if (name === undefined && data.resource) {
-        name = data.resource.label;
-      }
-      let id = undefined;
-      if (data.resource && data.resource.resource) {
-        id = data.resource.resource[0];
-      }
-      if (this.entry.type === "Scaffold") {
-        const objects = this.$refs.scaffold.findObjectsWithGroupName(name);
-        // If a region is not found use a hardcoded list to determine
-        // its parents region first
-        if (objects.length === 0) {
-          //Use nerve mapping
-          if (data.resource && data.resource.feature) {
-            const matched = getNerveNames(data.resource.feature.models);
-            if (matched.length > 0) return matched;
-          }
-          let matched = getParentsRegion(name);
-          if (matched) {
-            return matched;
-          }
-          // Hardcoded list failed - use an endpoint to find its parents
-          if (id && data.eventType === "selected") {
-            return fetch(`${this.apiLocation}get-related-terms/${id}`)
-              .then(response => response.json())
-              .then(data => {
-                if (data.uberon.array.length > 0) {
-                  name =
-                    data.uberon.array[0].name.charAt(0).toUpperCase() +
-                    data.uberon.array[0].name.slice(1);
-                  id = data.uberon.array[0].id.toUpperCase();
-                  return { id, name };
-                }
-              });
-          }
-        }
-      } else if (this.entry.type === "MultiFlatmap") {
-        if (name === "Bladder") {
-          name = "Urinary Bladder";
-        } else {
-          const matched = getNerveNames(name);
-          if (matched.length > 0) name = matched[0];
-        }
-      }
-      return { id, name };
-    },
-    getDatasetAnatomyInfo: function (identifier) {
-      fetch(`${this.apiLocation}dataset_info/anatomy?identifier=${identifier}`)
-        .then(response => response.json())
-        .then(data => {
-          const resultPayload = data.result[0];
-          let markerCurie;
-          try {
-            markerCurie = resultPayload.anatomy.organ[0].curie;
-          } catch (error) {
-            markerCurie = undefined;
-          }
-          let markerDoi;
-          try {
-            markerDoi = resultPayload.item.curie;
-          } catch (error) {
-            markerDoi = undefined;
-          }
-          let markerSpecies;
-          try {
-            let index = 0;
-            let found = false;
-            while (!found && index < resultPayload.organisms.subject.length) {
-              const entry = resultPayload.organisms.subject[index];
-              if (entry.species) {
-                markerSpecies = entry.species.name;
-                found = true;
-              }
-              index += 1;
-            }
-          } catch (error) {
-            markerSpecies = undefined;
-          }
-          this.updateFeatureMarkers([markerCurie], undefined)
-          this.settingsStore.updateFeaturedMarker({
-            identifier,
-            marker: markerCurie,
-            doi: markerDoi,
-            species: markerSpecies,
-          });
-        });
-    },
-    // Check if the old featured dataset api has any info
-    oldFeaturedDatasetApiHasInfo: async function () {
-      let response = await fetch(`${this.apiLocation}get_featured_datasets_identifiers`)
-      let data = await response.json()
-      if (!data.identifiers || data.identifiers.length == 0) {
-        return false;
-      } else {
-        return data.identifiers;
-      }
-    },
-    // Check if the new featured dataset api has any info
-    newFeaturedDatasetApiHasInfo: async function () {
-      let response = await fetch(`${this.apiLocation}get_featured_dataset`)
-      let data = await response.json()
-      if (!data.datasets || data.datasets.length == 0) {
-        return false;
-      } else {
-        return data.datasets.map(d => d.id);
-      }
-    },
-
-    /**
-     * Get a list of featured datasets to display.
-     */
-    getFeaturedDatasets: async function () {
-      let datasetIds = [];
-
-      // Check the two api endpoints for featured datasets, old one first
-      let oldInfo = await this.oldFeaturedDatasetApiHasInfo();
-      if (oldInfo) datasetIds = oldInfo;
-      else {
-        let newInfo = await this.newFeaturedDatasetApiHasInfo();
-        if (newInfo) datasetIds = newInfo;
-      }
-      // Update the store with the new list of featured datasets
-      this.settingsStore.updateFeatured(datasetIds);
-      datasetIds.forEach(element => {
-        this.getDatasetAnatomyInfo(element)
-      });
-    },
-    zoomToFeatures: function () {
-      return;
-    },
-    handleSyncMouseEvent: async function (data) {
-      let info = await this.getNameAndIdFromSyncData(data);
-      if (data.eventType === "highlighted") {
-        this.highlightFeatures(info);
-      } else if (data.eventType === "selected") {
-        this.displayTooltip(info);
-        //this.zoomToFeatures(info, true);
-      }
-    },
-    /**
-     * Handle sync pan zoom event
-     */
-    handleSyncPanZoomEvent: function () {
-      return;
-    },
-    highlightFeatures: function () {
-      return;
-    },
-    receiveSynchronisedEvent: async function (data) {
-      if (data.paneIndex !== this.entry.id) {
-        if (data.eventType == "panZoom") {
-          //this.handleSyncPanZoomEvent(data);
-        } else {
-          this.handleSyncMouseEvent(data);
-        }
-      } else {
-        if (data.eventType == "selected") {
-          let info = await this.getNameAndIdFromSyncData(data);
-          this.zoomToFeatures(info, false);
-        }
-      }
-    },
-    requestSynchronisedEvent: function () {
-      return;
-    },
-    getAvailableTerms: function () {
-      //Use the default list of uberons before we get the list from
-      //the api
-      let terms = getAvailableTermsForSpecies();
-      for (let i = 0; i < terms.length; i++) {
-        this.idNamePair[terms[i].id] = terms[i].name;
-      }
-      if (this.apiLocation) {
-        if (this._controller) this._controller.abort();
-        this._controller = new AbortController();
-        let signal = this._controller.signal;
-        fetch(`${this.apiLocation}get-organ-curies`, {
-          signal,
-        })
-          .then(response => response.json())
-          .then(data => {
-            this._controller = undefined;
-            data.uberon.array.forEach(pair => {
-              this.idNamePair[pair.id.toUpperCase()] =
-                pair.name.charAt(0).toUpperCase() + pair.name.slice(1);
-            });
-            return;
-          });
-      }
-    },
-    flatmapMarkerZoomUpdate() {
-      return;
-    },
-    onResize: function () {
-      return;
-    },
-    startHelp: function () {
-      if (this.isInHelp === false) {
-        this.helpMode = true;
-        window.addEventListener("mousedown", this.endHelp);
-        this.isInHelp = true;
-      }
-    },
-    endHelp: function () {
-      window.removeEventListener("mousedown", this.endHelp);
-      this.helpMode = false;
-      setTimeout(() => {
-        this.isInHelp = false;
-      }, 200);
-    },
-  },
-  data: function () {
-    return {
-      apiLocation: undefined,
-      activeSpecies: "Rat",
-      scaffoldCamera: undefined,
-      mainStyle: {
-        height: this.entry.datasetTitle ? "calc(100% - 30px)" : "100%",
-        width: "100%",
-        bottom: "0px",
-      },
-      helpMode: false,
-      idNamePair: {},
-      scaffoldLoaded: false,
-      isInHelp: false,
-    };
-  },
-  created: function () {
-    this.flatmapAPI = undefined;
-    this.apiLocation = undefined;
-    if (this.settingsStore.flatmapAPI)
-      this.flatmapAPI = this.settingsStore.flatmapAPI;
-    if (this.settingsStore.sparcApi)
-      this.apiLocation = this.settingsStore.sparcApi;
-  },
-};
+import {
+  getAvailableTermsForSpecies,
+  getInteractiveAction,
+  getNerveNames,
+  getParentsRegion,
+} from "../components/SimulatedData.js";
+import EventBus from "../components/EventBus";
+import markerZoomLevels from "../components/markerZoomLevelsHardCoded.js";
+import { mapStores } from 'pinia';
+import { useSettingsStore } from '../stores/settings';
+import { useSplitFlowStore } from '../stores/splitFlow';
+
+function capitalise(text) {
+  return text[0].toUpperCase() + text.substring(1)
+}
+
+/* eslint-disable no-alert, no-console */
+export default {
+  props: {
+    /**
+     * Object containing information for
+     * the required viewing.
+     */
+    entry: Object,
+    visible: {
+      type: Boolean,
+      default: true,
+    },
+    mouseHovered: {
+      type: Boolean,
+      default: false,
+    },
+  },
+  computed: {
+    ...mapStores(useSettingsStore, useSplitFlowStore),
+    syncMode() {
+      return this.splitFlowStore.syncMode;
+    },
+  },
+  mounted: function () {
+    EventBus.on("startHelp", () => {
+      this.startHelp();
+    });
+  },
+  methods: {
+    toggleSyncMode: function () {
+      return;
+    },
+    getState: function () {
+      return undefined;
+    },
+    openMap: function (type) {
+      if (type === "SYNC") {
+        this.toggleSyncMode();
+      } else {
+        EventBus.emit("OpenNewMap", type);
+      }
+    },
+    updateWithViewUrl: function() {
+      return;
+    },
+    /**
+     * Perform a local search on this contentvuer
+     */
+    search: function () {
+      return false;
+    },
+    /**
+     * Get a list of search suggestions on this contentvuer
+     */
+    searchSuggestions: function () {
+      return;
+    },
+    /**
+     * Callback when the vuers emit a selected event.
+     */
+    resourceSelected: function (type, resource, augmented) {
+      // Skip processing if resources already has actions
+      if (this.resourceHasAction(resource)) {
+        EventBus.emit("PopoverActionClick", resource);
+        return;
+      }
+
+      let returnedAction = undefined;
+      let action = "none";
+      let fireResourceSelected = false;
+      const result = {
+        paneIndex: this.entry.id,
+        type: type,
+        resource: resource,
+        internalName: undefined,
+        eventType: undefined,
+      };
+
+      if (type == "MultiFlatmap" || type == "Flatmap") {
+        result.internalName = this.idNamePair[resource.feature.models];
+        if (resource.eventType == "click") {
+          result.eventType = "selected";
+          if (resource.feature.type == "marker") {
+            let label = this.idNamePair[resource.feature.models];
+            let hardcodedAnnotation = markerZoomLevels.filter(
+              mz => mz.id === resource.feature.models
+            );
+
+            if (
+              this.settingsStore.isFeaturedMarkerIdentifier(
+                resource.feature.id
+              )
+            ) {
+              // It is a featured dataset search for DOI.
+              returnedAction = {
+                type: "Search",
+                term: this.settingsStore.featuredMarkerDoi(
+                  resource.feature.id
+                ),
+              };
+            } else if (hardcodedAnnotation.filter(h => h.keyword).length > 0) {
+              // if it matches our stored keywords, it is a keyword search
+              // Keyword searches do not contain labels, so switch to keyword search if no label exists
+              returnedAction = {
+                type: "Search",
+                term:
+                  "http://purl.obolibrary.org/obo/" +
+                  resource.feature.models.replace(":", "_"),
+              };
+            } else {
+              // Facet search on anatomy if it is not a keyword search
+              returnedAction = {
+                type: "Facet",
+                facet: label,
+                facetPropPath: "anatomy.organ.category.name",
+                term: "Anatomical structure",
+              };
+            }
+
+            fireResourceSelected = true;
+            if (type == "MultiFlatmap") {
+              const flatmap =
+                this.$refs.multiflatmap.getCurrentFlatmap().mapImp;
+              flatmap.clearSearchResults();
+            }
+          } else if (resource.feature.type == "feature") {
+            // Do no open scaffold in sync map
+            if (this.syncMode) {
+              fireResourceSelected = true;
+            } else {
+              action = "scaffold";
+            }
+          }
+        } else if (resource.eventType == "mouseenter") {
+          result.eventType = "highlighted";
+          fireResourceSelected = true;
+        }
+      } else if (type == "Scaffold") {
+        if (resource && resource[0]) {
+          result.internalName = resource[0].data.id;
+          // Facet search if marker is clicked
+          if (resource[0].data.lastActionOnMarker === true) {
+            returnedAction = {
+              type: "Facet",
+              facet: capitalise(resource[0].data.id),
+              facetPropPath: "anatomy.organ.category.name",
+              term: "Anatomical structure",
+            };
+          }
+        }
+        result.eventType = "selected";
+        fireResourceSelected = true;
+        action = "search";
+      }
+      if ((returnedAction === undefined) && augmented) {
+        returnedAction = getInteractiveAction(result, action);
+      }
+      if (returnedAction) EventBus.emit("PopoverActionClick", returnedAction);
+      if (fireResourceSelected) this.$emit("resource-selected", result);
+    },
+    resourceHasAction: function (resource) {
+      return (
+        resource.type === "URL" ||
+        resource.type === "Search" ||
+        resource.type === "Neuron Search" ||
+        resource.type == "Facet" ||
+        resource.type == "Facets"
+      );
+    },
+    /**
+     * Check if this viewer is currently visible
+     */
+     isVisible: function() {
+      const paneName = this.splitFlowStore.getPaneNameById(this.entry.id);
+      return paneName !== undefined;
+    },
+    displayTooltip: function() {
+      return;
+    },
+    /**
+     * Get the term to zoom/highlight in a synchronisation event,
+     * if it cannot be found in the map, it will perform several
+     * calls to try to ge a valid name/id.
+     */
+    getNameAndIdFromSyncData: async function (data) {
+      let name = data.internalName;
+      if (name === undefined && data.resource) {
+        name = data.resource.label;
+      }
+      let id = undefined;
+      if (data.resource && data.resource.resource) {
+        id = data.resource.resource[0];
+      }
+      if (this.entry.type === "Scaffold") {
+        const objects = this.$refs.scaffold.findObjectsWithGroupName(name);
+        // If a region is not found use a hardcoded list to determine
+        // its parents region first
+        if (objects.length === 0) {
+          //Use nerve mapping
+          if (data.resource && data.resource.feature) {
+            const matched = getNerveNames(data.resource.feature.models);
+            if (matched.length > 0) return matched;
+          }
+          let matched = getParentsRegion(name);
+          if (matched) {
+            return matched;
+          }
+          // Hardcoded list failed - use an endpoint to find its parents
+          if (id && data.eventType === "selected") {
+            return fetch(`${this.apiLocation}get-related-terms/${id}`)
+              .then(response => response.json())
+              .then(data => {
+                if (data.uberon.array.length > 0) {
+                  name =
+                    data.uberon.array[0].name.charAt(0).toUpperCase() +
+                    data.uberon.array[0].name.slice(1);
+                  id = data.uberon.array[0].id.toUpperCase();
+                  return { id, name };
+                }
+              });
+          }
+        }
+      } else if (this.entry.type === "MultiFlatmap") {
+        if (name === "Bladder") {
+          name = "Urinary Bladder";
+        } else {
+          const matched = getNerveNames(name);
+          if (matched.length > 0) name = matched[0];
+        }
+      }
+      return { id, name };
+    },
+    getDatasetAnatomyInfo: function (identifier) {
+      fetch(`${this.apiLocation}dataset_info/anatomy?identifier=${identifier}`)
+        .then(response => response.json())
+        .then(data => {
+          const resultPayload = data.result[0];
+          let markerCurie;
+          try {
+            markerCurie = resultPayload.anatomy.organ[0].curie;
+          } catch (error) {
+            markerCurie = undefined;
+          }
+          let markerDoi;
+          try {
+            markerDoi = resultPayload.item.curie;
+          } catch (error) {
+            markerDoi = undefined;
+          }
+          let markerSpecies;
+          try {
+            let index = 0;
+            let found = false;
+            while (!found && index < resultPayload.organisms.subject.length) {
+              const entry = resultPayload.organisms.subject[index];
+              if (entry.species) {
+                markerSpecies = entry.species.name;
+                found = true;
+              }
+              index += 1;
+            }
+          } catch (error) {
+            markerSpecies = undefined;
+          }
+          this.updateFeatureMarkers([markerCurie], undefined)
+          this.settingsStore.updateFeaturedMarker({
+            identifier,
+            marker: markerCurie,
+            doi: markerDoi,
+            species: markerSpecies,
+          });
+        });
+    },
+    // Check if the old featured dataset api has any info
+    oldFeaturedDatasetApiHasInfo: async function () {
+      let response = await fetch(`${this.apiLocation}get_featured_datasets_identifiers`)
+      let data = await response.json()
+      if (!data.identifiers || data.identifiers.length == 0) {
+        return false;
+      } else {
+        return data.identifiers;
+      }
+    },
+    // Check if the new featured dataset api has any info
+    newFeaturedDatasetApiHasInfo: async function () {
+      let response = await fetch(`${this.apiLocation}get_featured_dataset`)
+      let data = await response.json()
+      if (!data.datasets || data.datasets.length == 0) {
+        return false;
+      } else {
+        return data.datasets.map(d => d.id);
+      }
+    },
+
+    /**
+     * Get a list of featured datasets to display.
+     */
+    getFeaturedDatasets: async function () {
+      let datasetIds = [];
+
+      // Check the two api endpoints for featured datasets, old one first
+      let oldInfo = await this.oldFeaturedDatasetApiHasInfo();
+      if (oldInfo) datasetIds = oldInfo;
+      else {
+        let newInfo = await this.newFeaturedDatasetApiHasInfo();
+        if (newInfo) datasetIds = newInfo;
+      }
+      // Update the store with the new list of featured datasets
+      this.settingsStore.updateFeatured(datasetIds);
+      datasetIds.forEach(element => {
+        this.getDatasetAnatomyInfo(element)
+      });
+    },
+    zoomToFeatures: function () {
+      return;
+    },
+    handleSyncMouseEvent: async function (data) {
+      let info = await this.getNameAndIdFromSyncData(data);
+      if (data.eventType === "highlighted") {
+        this.highlightFeatures(info);
+      } else if (data.eventType === "selected") {
+        this.displayTooltip(info);
+        //this.zoomToFeatures(info, true);
+      }
+    },
+    /**
+     * Handle sync pan zoom event
+     */
+    handleSyncPanZoomEvent: function () {
+      return;
+    },
+    highlightFeatures: function () {
+      return;
+    },
+    receiveSynchronisedEvent: async function (data) {
+      if (data.paneIndex !== this.entry.id) {
+        if (data.eventType == "panZoom") {
+          //this.handleSyncPanZoomEvent(data);
+        } else {
+          this.handleSyncMouseEvent(data);
+        }
+      } else {
+        if (data.eventType == "selected") {
+          let info = await this.getNameAndIdFromSyncData(data);
+          this.zoomToFeatures(info, false);
+        }
+      }
+    },
+    requestSynchronisedEvent: function () {
+      return;
+    },
+    getAvailableTerms: function () {
+      //Use the default list of uberons before we get the list from
+      //the api
+      let terms = getAvailableTermsForSpecies();
+      for (let i = 0; i < terms.length; i++) {
+        this.idNamePair[terms[i].id] = terms[i].name;
+      }
+      if (this.apiLocation) {
+        if (this._controller) this._controller.abort();
+        this._controller = new AbortController();
+        let signal = this._controller.signal;
+        fetch(`${this.apiLocation}get-organ-curies`, {
+          signal,
+        })
+          .then(response => response.json())
+          .then(data => {
+            this._controller = undefined;
+            data.uberon.array.forEach(pair => {
+              this.idNamePair[pair.id.toUpperCase()] =
+                pair.name.charAt(0).toUpperCase() + pair.name.slice(1);
+            });
+            return;
+          });
+      }
+    },
+    flatmapMarkerZoomUpdate() {
+      return;
+    },
+    onResize: function () {
+      return;
+    },
+    startHelp: function () {
+      if (this.isInHelp === false) {
+        this.helpMode = true;
+        window.addEventListener("mousedown", this.endHelp);
+        this.isInHelp = true;
+      }
+    },
+    endHelp: function () {
+      window.removeEventListener("mousedown", this.endHelp);
+      this.helpMode = false;
+      setTimeout(() => {
+        this.isInHelp = false;
+      }, 200);
+    },
+  },
+  data: function () {
+    return {
+      apiLocation: undefined,
+      activeSpecies: "Rat",
+      scaffoldCamera: undefined,
+      mainStyle: {
+        height: this.entry.datasetTitle ? "calc(100% - 30px)" : "100%",
+        width: "100%",
+        bottom: "0px",
+      },
+      helpMode: false,
+      idNamePair: {},
+      scaffoldLoaded: false,
+      isInHelp: false,
+    };
+  },
+  created: function () {
+    this.flatmapAPI = undefined;
+    this.apiLocation = undefined;
+    if (this.settingsStore.flatmapAPI)
+      this.flatmapAPI = this.settingsStore.flatmapAPI;
+    if (this.settingsStore.sparcApi)
+      this.apiLocation = this.settingsStore.sparcApi;
+  },
+};