@abi-software/mapintegratedvuer 0.7.1-auth.3 → 0.7.1-auth.5

package/dist/mapintegratedvuer.js

@@ -101854,7 +101854,7 @@ const KGt = ZGt("main", {
   }),
   getters: {
     userToken(e) {
-      return console.log("🚀 ~ flatmapvuer userToken ~ state:", e), e.userProfile.token;
+      return e.userProfile.token;
     }
   }
 }), gFe = (e, t) => {

package/dist/mapintegratedvuer.umd.cjs

@@ -2124,7 +2124,7 @@ ${t.vs}`,t}setDataProperty(t,r,n){const i=Jr(this,BT).get(+t);i&&(!(r in i)||i[r
 	state: () => new MyClass()
 Found in store "${M.$id}".`),m&&o&&r.hydrate&&r.hydrate(M.$state,m),u=!0,d=!0,M}function Djt(e,t,r){let n,i;const o=typeof t=="function";if(typeof e=="string")n=e,i=o?r:t;else if(i=e,n=e.id,process.env.NODE_ENV!=="production"&&typeof n!="string")throw new Error('[🍍]: "defineStore()" must be passed a store id as its first argument.');function a(l,c){const u=s.hasInjectionContext();if(l=(process.env.NODE_ENV==="test"&&KS&&KS._testing?null:l)||(u?s.inject(Vjt,null):null),l&&GR(l),process.env.NODE_ENV!=="production"&&!KS)throw new Error(`[🍍]: "getActivePinia()" was called but there was no active Pinia. Are you trying to use a store before calling "app.use(pinia)"?
 See https://pinia.vuejs.org/core-concepts/outside-component-usage.html for help.
-This will fail in production.`);l=KS,l._s.has(n)||(o?D$(n,t,i,l):Wbe(n,i,l),process.env.NODE_ENV!=="production"&&(a._pinia=l));const d=l._s.get(n);if(process.env.NODE_ENV!=="production"&&c){const h="__hot:"+n,p=o?D$(h,t,i,l,!0):Wbe(h,R2({},i),l,!0);c._hotUpdate(p),delete l.state.value[h],l._s.delete(h)}if(process.env.NODE_ENV!=="production"&&R$){const h=s.getCurrentInstance();if(h&&h.proxy&&!c){const p=h.proxy,f="_pStores"in p?p._pStores:p._pStores={};f[n]=d}}return d}return a.$id=n,a}function Fjt(e,t){return Array.isArray(t)?t.reduce((r,n)=>(r[n]=function(){return e(this.$pinia)[n]},r),{}):Object.keys(t).reduce((r,n)=>(r[n]=function(){const i=e(this.$pinia),o=t[n];return typeof o=="function"?o.call(this,i):i[o]},r),{})}const zjt=Djt("main",{state:()=>({userProfile:{token:""}}),getters:{userToken(e){return console.log("🚀 ~ flatmapvuer userToken ~ state:",e),e.userProfile.token}}}),qbe=(e,t)=>{const r=[];let n=e.organs?e.organs:e.ftus;const i=n?n.filter((o,a)=>n.findIndex(l=>l.label===o.label)===a):void 0;return i&&i.forEach(o=>{const a={label:o.label,models:o.models,key:`${t}.${o.label}`},l=qbe(o,a.key);l.length>0&&(a.children=l),r.push(a)}),r},jjt=function(){return{destinations:[],origins:[],components:[],destinationsWithDatasets:[],originsWithDatasets:[],componentsWithDatasets:[],resource:void 0}},Ujt={name:"FlatmapVuer",components:{Button:Ah,Col:w5,Loading:uyt,Radio:c5e,RadioGroup:u5e,Row:W4,Select:gT,MapSvgIcon:aw,MapSvgSpriteColor:BO,Tooltip:YZ,TreeControls:N5e,SelectionsGroup:R5e,SvgLegends:B5e,ElIconWarningFilled:Vfe,ElIconArrowDown:f5,ElIconArrowLeft:Hfe},beforeCreate:function(){this.mapManager=void 0,this.mapImp=void 0,this.setStateRequired=!1},methods:{setFlightPath3D:function(e){this.flightPath3DRadio=e,this.mapImp&&this.mapImp.enable3dPaths(e)},viewLatestMap:function(){let e=this.biologicalSex?this.biologicalSex:void 0;this.entry==="NCBITaxon:9606"&&(e="PATO:0000384");const t={entry:this.entry,biologicalSex:e,viewport:this.mapImp.getState()};this.$emit("view-latest-map",t)},backgroundChangeCallback:function(e){this.currentBackground=e,this.mapImp&&this.mapImp.setBackgroundColour(this.currentBackground,1)},processSystems:function(e){if(this.systems.length=0,e&&e.length>0){const t={label:"All",key:"All",children:[]};e.forEach(r=>{const n={colour:r.colour,enabled:r.enabled,label:r.id,key:r.id},i=qbe(r,n.key);i.length>0&&(n.children=i),t.children.push(n)}),this.systems.push(t)}},processTaxon:function(e,t){this.taxonConnectivity.length=0,t.forEach(r=>{D5e(e,r).then(n=>{const i={taxon:r,label:n};this.taxonConnectivity.push(i)})})},toggleDrawer:function(){this.drawerOpen=!this.drawerOpen},setColour:function(e){this.colourRadio=e,this.mapImp&&this.mapImp.setColour({colour:e,outline:this.outlinesRadio})},setOutlines:function(e){this.outlineRadio=e,this.mapImp&&this.mapImp.setColour({colour:this.colourRadio,outline:e})},resetView:function(){this.mapImp&&(this.mapImp.resetMap(),this.$refs.centrelinesSelection&&this.$refs.centrelinesSelection.reset(),this.$refs.skcanSelection&&this.$refs.skcanSelection.reset(),this.$refs.layersSelection&&this.$refs.layersSelection.reset(),this.$refs.systemsSelection&&this.$refs.pathwaysSelection.reset(),this.$refs.pathwaysSelection&&this.$refs.pathwaysSelection.reset())},zoomIn:function(){this.mapImp&&this.mapImp.zoomIn()},zoomOut:function(){this.mapImp&&this.mapImp.zoomOut()},centreLinesSelected:function(e){this.mapImp&&this.mapImp.enableCentrelines(e.value)},sckanSelected:function(e){this.mapImp&&this.mapImp.enableSckanPath(e.key,e.value)},checkAllSCKAN:function(e){this.mapImp&&e.keys.forEach(t=>this.mapImp.enableSckanPath(t,e.value))},highlightConnectedPaths:function(e){if(this.mapImp){let t=[...this.mapImp.pathModelNodes(e)].map(n=>this.mapImp.featureProperties(n)),r=[];t.forEach(n=>{this.mapImp.nodePathModels(n.featureId).forEach(i=>{r.push(i)})}),this.mapImp.zoomToFeatures(r,{noZoomIn:!0})}},systemSelected:function(e){this.mapImp&&this.mapImp.enableSystem(e.key,e.value)},checkAllSystems:function(e){this.mapImp&&this.systems[0].children.forEach(t=>this.mapImp.enableSystem(t.label,e))},ftuSelected:function(e){this.searchAndShowResult(e,!0)},layersSelected:function(e){this.mapImp&&this.mapImp.enableLayer(e.key,e.value)},checkAllLayers:function(e){this.mapImp&&e.keys.forEach(t=>this.mapImp.enableLayer(t,e.value))},taxonsSelected:function(e){this.mapImp&&this.mapImp.enableConnectivityByTaxonIds(e.key,e.value)},checkAllTaxons:function(e){this.mapImp&&e.keys.forEach(t=>this.mapImp.enableConnectivityByTaxonIds(t,e.value))},pathwaysSelected:function(e){this.mapImp&&this.mapImp.enablePath(e.key,e.value)},checkAllPathways:function(e){this.mapImp&&e.keys.forEach(t=>this.mapImp.enablePath(t,e.value))},enablePanZoomEvents:function(e){this.mapImp.enablePanZoomEvents(e)},eventCallback:function(){return(e,t,...r)=>{if(e!=="pan-zoom"){const n=t.label,i=[t.models],o=this.entry,a=this.biologicalSex;let l;t.taxons&&(typeof t.taxons!="object"?l=JSON.parse(t.taxons):l=t.taxons);const c={dataset:t.dataset,biologicalSex:a,taxonomy:o,resource:i,label:n,feature:t,userData:r,eventType:e,provenanceTaxonomy:l};e==="click"?this.viewingMode==="Network Discovery"?this.highlightConnectedPaths([t.models]):this.currentActive=t.models?t.models:"":e==="mouseenter"&&this.viewingMode!=="Network Discovery"&&(this.currentHover=t.models?t.models:""),t&&t.type!=="marker"&&e==="click"&&this.viewingMode!=="Network Discovery"&&this.checkAndCreatePopups(c),this.$emit("resource-selected",c)}else this.$emit("pan-zoom-callback",t)}},checkAndCreatePopups:async function(e){if(this.viewingMode==="Annotation")e.feature&&e.feature.featureId&&e.feature.models?(this.annotationEntry={...e.feature,resourceId:this.serverUUID},this.displayTooltip(e.feature.models)):this.annotation={};else{let t=await this.flatmapQueries.retrieveFlatmapKnowledgeForEvent(e);(t[0]||t[1]||e.feature.hyperlinks&&e.feature.hyperlinks.length>0)&&(this.resourceForTooltip=e.resource[0],e.resourceForTooltip=this.resourceForTooltip,this.createTooltipFromNeuronCuration(e))}},popUpCssHacks:function(){let e=document.querySelector(".flatmap-tooltip-popup");e&&(e.style.display="none"),document.querySelector(".maplibregl-popup-close-button").style.display="block",this.$refs.tooltip.$el.style.display="flex",document.querySelector(".maplibregl-popup-close-button").onclick=()=>{document.querySelector(".flatmap-tooltip-popup").style.display="block"}},closeTooltip:function(){this.$refs.tooltip.$el.style.display="none",document.querySelectorAll(".maplibregl-popup").forEach(e=>{e.style.display="none"})},createTooltipFromNeuronCuration:async function(e){this.tooltipEntry=await this.flatmapQueries.createTooltipData(e),this.displayTooltip(e.resource[0])},showPopup:function(e,t,r){let n=r;this.mapImp&&(n?n.className||(n.className="custom-popup"):n={className:"custom-popup",positionAtLastClick:!0},this.mapImp.showPopup(e,t,n))},showMarkerPopup:function(e,t,r){this.mapImp&&this.mapImp.showMarkerPopup(e,t,r)},closeMinimap:function(){let e=this.$refs.flatmapContainer.querySelector(".maplibregl-ctrl-minimap");this.minimapSmall?(e.classList.add("enlarge"),e.classList.remove("shrink")):(e.classList.add("shrink"),e.classList.remove("enlarge")),this.minimapSmall=!this.minimapSmall},addResizeButtonToMinimap:function(){let e=this.$refs.flatmapContainer.querySelector(".maplibregl-ctrl-minimap");e&&(this.$refs.minimapResize&&this.$refs.minimapResize.$el.parentNode&&this.$refs.minimapResize.$el.parentNode.removeChild(this.$refs.minimapResize.$el),e.appendChild(this.$refs.minimapResize.$el),this.minimapResizeShow=!0)},setHelpMode:function(e){e?(this.inHelp=!0,this.hoverVisibilities.forEach(t=>{t.value=!0}),this.openFlatmapHelpPopup()):(this.inHelp=!1,this.hoverVisibilities.forEach(t=>{t.value=!1}),this.closeFlatmapHelpPopup())},showToolitip:function(e){this.inHelp||(clearTimeout(this.tooltipWait[e]),this.tooltipWait[e]=setTimeout(()=>{this.hoverVisibilities[e].value=!0},500))},hideToolitip:function(e){this.inHelp||(clearTimeout(this.tooltipWait[e]),this.tooltipWait[e]=setTimeout(()=>{this.hoverVisibilities[e].value=!1},500))},displayTooltip:function(e){this.tooltipDisplay=!0,this.disableUI||this.$nextTick(()=>{this.displayPopup(e)})},displayPopup:function(e){this.mapImp.showPopup(this.mapImp.modelFeatureIds(e)[0],this.$refs.tooltip.$el,{className:"flatmapvuer-popover",positionAtLastClick:!0}),this.popUpCssHacks()},openFlatmapHelpPopup:function(){if(this.mapImp){let e=this.mapImp.modelFeatureIds("UBERON:0000948");e&&e.length>0&&this.mapImp.showPopup(e[0],"Click for more information",{anchor:"top",className:"flatmap-popup-popper"})}},closeFlatmapHelpPopup:function(){this.$el.querySelectorAll(".maplibregl-popup-close-button").forEach(e=>{e.click()})},getLabels:function(){let e=[];if(this.mapImp){let t=this.mapImp.annotations;for(let r of t.values())r.label&&e.push(r.label);return Array.from(new Set(e))}},getState:function(){if(this.mapImp){let e={entry:this.entry,viewport:this.mapImp.getState()};const t=this.mapImp.getIdentifier();return this.biologicalSex?e.biologicalSex=this.biologicalSex:t&&t.biologicalSex&&(e.biologicalSex=t.biologicalSex),t&&t.uuid&&(e.uuid=t.uuid),e}},setState:function(e){e&&(this.mapImp&&e.entry&&this.entry==e.entry&&(!e.biologicalSex||e.biologicalSex===this.biologicalSex)?e.viewport&&this.mapImp.setState(e.viewport):this.createFlatmap(e),this.setStateRequired=!1)},restoreMapState:function(e){e&&(e.viewport&&this.mapImp.setState(e.viewport),e.searchTerm&&this.searchAndShowResult(e.searchTerm,!0))},setFlightPathInfo:function(e){(e===1.6||e>1.6)&&(this.displayFlightPathOption=!0,this.setFlightPath3D(!0))},createFlatmap:function(e){if(!this.mapImp&&!this.loading){this.loading=!0;let t=!1;this.displayMinimap&&(t={position:"top-right"});let r={taxon:this.entry};this.uuid&&(r.uuid=this.uuid),e?e.uuid?r={uuid:e.uuid}:e.entry&&(r.taxon=e.entry,e.biologicalSex?r.biologicalSex=e.biologicalSex:r.taxon==="NCBITaxon:9606"&&(r.biologicalSex="PATO:0000384")):this.biologicalSex&&(r.biologicalSex=this.biologicalSex),this.mapManager.loadMap(r,this.$refs.display,this.eventCallback(),{minZoom:this.minZoom,tooltips:this.tooltips,minimap:t}).then(n=>{this.mapImp=n,this.serverUUID=this.mapImp.getIdentifier().uuid;let i=this.mapImp.details.version;this.setFlightPathInfo(i),this.onFlatmapReady(),this._stateToBeSet?this.restoreMapState(this._stateToBeSet):this.restoreMapState(e)})}else e&&(this._stateToBeSet={viewport:e.viewport,searchTerm:e.searchTerm},this.mapImp&&!this.loading&&this.restoreMapState(this._stateToBeSet))},computePathControlsMaximumHeight(){const e=this.$refs.display;if(e){const t=getComputedStyle(e),r=parseInt(t.paddingTop)+parseInt(t.paddingBottom),n=e.clientHeight-r;this.pathwaysMaxHeight=n-170}},mapResize:function(){try{this.computePathControlsMaximumHeight(),this.mapImp&&(this.mapImp.resize(),this.showMinimap(this.displayMinimap),this.mapImp._minimap&&this.mapImp._minimap._miniMap.resize())}catch{console.error("Map resize error")}},onFlatmapReady:function(){this.sensor=new ETt(this.$refs.display,this.mapResize),this.mapImp.options&&this.mapImp.options.style==="functional"&&(this.isFC=!0),this.mapImp.setBackgroundOpacity(1),this.backgroundChangeCallback(this.currentBackground),this.pathways=this.mapImp.pathTypes(),this.mapImp.enableCentrelines(!1),this.processSystems(this.mapImp.getSystems()),this.processTaxon(this.flatmapAPI,this.mapImp.taxonIdentifiers),this.addResizeButtonToMinimap(),this.loading=!1,this.computePathControlsMaximumHeight(),this.drawerOpen=!0,this.mapResize(),this.$emit("ready",this)},showMinimap:function(e){this.mapImp&&this.mapImp.showMinimap(e)},showPathwaysDrawer:function(e){this.drawerOpen=e},searchAndShowResult:function(e,t){if(this.mapImp){if(e===void 0||e==="")return this.mapImp.clearSearchResults(),!0;{const r=this.mapImp.search(e);if(r&&r.results&&r.results.length>0){if(this.mapImp.showSearchResults(r),t&&r.results[0].featureId&&r.results[0].text){const n=this.mapImp.annotation(r.results[0].featureId);this.mapImp.showPopup(r.results[0].featureId,n.label,{className:"custom-popup",positionAtLastClick:!1,preserveSelection:!0})}return!0}else this.mapImp.clearSearchResults()}}return!1},searchSuggestions:function(e){return this.mapImp?this.mapImp.search(e):[]}},props:{entry:{type:String,required:!0},uuid:String,biologicalSex:{type:String,default:""},minZoom:{type:Number,default:4},tooltips:{type:Boolean,default:!0},helpMode:{type:Boolean,default:!1},renderAtMounted:{type:Boolean,default:!0},displayMinimap:{type:Boolean,default:!1},displayWarning:{type:Boolean,default:!1},enableOpenMapUI:{type:Boolean,default:!1},openMapOptions:{type:Array,default:function(){return[{display:"Open AC Map",key:"AC"},{display:"Open FC Map",key:"FC"},{display:"Open 3D Human Map",key:"3D"}]}},showStarInLegend:{type:Boolean,default:!1},isLegacy:{type:Boolean,default:!1},displayLatestChanges:{type:Boolean,default:!1},state:{type:Object,default:void 0},flatmapAPI:{type:String,default:"https://mapcore-demo.org/current/flatmap/v3/"},sparcAPI:{type:String,default:"https://api.sparc.science/"},disableUI:{type:Boolean,default:!1}},provide(){return{flatmapAPI:this.flatmapAPI,sparcAPI:this.sparcAPI,userApiKey:this.userToken}},data:function(){return{annotationEntry:{},tooltipDisplay:!1,serverUUID:void 0,layers:[],pathways:[],sckanDisplay:[{label:"Display Path with SCKAN",key:"VALID"}],centreLines:[{label:"Display Nerves",key:"centrelines",enabled:!1}],systems:[],taxonConnectivity:[],pathwaysMaxHeight:1e3,hoverVisibilities:[{value:!1},{value:!1},{value:!1},{value:!1},{value:!1},{value:!1},{value:!1},{value:!1},{value:!1},{value:!1}],yellowstar:kTt,isFC:!1,inHelp:!1,currentBackground:"white",availableBackground:["white","lightskyblue","black"],loading:!1,flatmapMarker:STt,tooltipEntry:jjt(),connectivityTooltipVisible:!1,drawerOpen:!1,annotationRadio:!1,flightPath3DRadio:!1,displayFlightPathOption:!1,colourRadio:!0,outlinesRadio:!0,minimapResizeShow:!1,minimapSmall:!1,currentActive:"",currentHover:"",viewingMode:"Exploration",viewingModes:["Annotation","Exploration","Network Discovery"],openMapRef:void 0,backgroundIconRef:void 0}},computed:{...Fjt(zjt,["userToken"])},watch:{entry:function(){this.state||this.createFlatmap()},helpMode:function(e,t){e!==t&&this.setHelpMode(val)},state:{handler:function(e,t){e!==t&&(this.mapManager?this.setState(e):this.setStateRequired=!0)},immediate:!0,deep:!0},disableUI:function(e){e&&this.closeTooltip()}},mounted:function(){this.openMapRef=s.shallowRef(this.$refs.openMapRef),this.backgroundIconRef=s.shallowRef(this.$refs.backgroundIconRef),this.tooltipWait=[],this.tooltipWait.length=this.hoverVisibilities.length,this.mapManager=new Fbe(this.flatmapAPI),this.flatmapQueries=new MTt,this.flatmapQueries.initialise(this.flatmapAPI),this.state?this.setStateRequired&&this.setState(this.state):this.renderAtMounted&&this.createFlatmap()}},m3=e=>(s.pushScopeId("data-v-4f5a6743"),e=e(),s.popScopeId(),e),Gjt={class:"flatmap-container",ref:"flatmapContainer","element-loading-text":"Loading...","element-loading-background":"rgba(0, 0, 0, 0.3)"},Wjt={style:{height:"100%",width:"100%",position:"relative","overflow-y":"none"}},qjt={style:{height:"100%",width:"100%"},ref:"display"},Zjt={class:"beta-popovers"},Xjt=m3(()=>s.createElementVNode("a",{href:"https://sparc.science/resources/1ZUKXU2YmLcn2reCyXjlew",target:"_blank"}," ApiNATOMY ",-1)),Kjt=m3(()=>s.createElementVNode("a",{href:"https://sparc.science/resources/6eg3VpJbwQR4B84CjrvmyD",target:"_blank"}," SCKAN ",-1)),Yjt=m3(()=>s.createElementVNode("a",{href:"https://sparc.science/resources/1ZUKXU2YmLcn2reCyXjlew",target:"_blank"}," ApiNATOMY ",-1)),Jjt=m3(()=>s.createElementVNode("a",{href:"https://sparc.science/resources/6eg3VpJbwQR4B84CjrvmyD",target:"_blank"}," SCKAN ",-1)),$jt=m3(()=>s.createElementVNode("span",{class:"warning-text"},"Legacy Map",-1)),eUt={key:1,class:"warning-text"},tUt=m3(()=>s.createElementVNode("span",{class:"warning-text"},"What's new?",-1)),rUt=m3(()=>s.createElementVNode("b",null,"Network discovery mode",-1)),nUt=m3(()=>s.createElementVNode("p",null," You can now view the network of neurons connected to a selected neuron. This mode is located in the settings at the bottom right. Once discovery mode is on, click on a neuron to see its connections. ",-1)),iUt=m3(()=>s.createElementVNode("b",null,"Now can display up to 6 panes",-1)),oUt=m3(()=>s.createElementVNode("p",null," You can now display up to 6 panes in the flatmap. This allows you to compare between different datasets and/or different views of the same dataset. 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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@abi-software/mapintegratedvuer",
-  "version": "0.7.1-auth.3",
+  "version": "0.7.1-auth.5",
   "license": "Apache-2.0",
   "scripts": {
     "serve": "vite --host --force",
@@ -42,7 +42,7 @@
     "*.js"
   ],
   "dependencies": {
-    "@abi-software/flatmapvuer": "^0.6.1-auth.4",
+    "@abi-software/flatmapvuer": "^0.6.1-auth.6",
     "@abi-software/map-side-bar": "^1.7.0-vue3.4",
     "@abi-software/plotvuer": "^0.4.0-vue-3-alpha.10",
     "@abi-software/scaffoldvuer": "^0.4.0-vue3.6",

package/src/stores/index.js

@@ -1,11 +1,15 @@
 import { defineStore } from 'pinia'
 
+/**
+ * Activate the store when run the application individually.
+ * If the store exist in parent application, 
+ * instead of creating a new store it will access the parent main store.
+ */
 export const useMainStore = defineStore('main', {
   state: () => ({
     userProfile: {
       token: ''
     },
-    marker: 'mapintegratedvuer marker'
   }),
   getters: {
     userToken(state) {