@abi-software/map-utilities 1.6.1-beta.8 → 1.7.0

package/dist/map-utilities.js

@@ -35284,8 +35284,9 @@ async function H7(t, e, r) {
         value: n
       }
     ]
-  }), l = ((v = (h = u == null ? void 0 : u.results) == null ? void 0 : h.values) == null ? void 0 : v.map((p) => p[1])) || [], c = [.../* @__PURE__ */ new Set([...s, ...l])], d = await xT(t, e, c);
-  return [.../* @__PURE__ */ new Set([...c, ...d])];
+  }), l = ((v = (h = u == null ? void 0 : u.results) == null ? void 0 : h.values) == null ? void 0 : v.map((p) => p[1])) || [], c = [.../* @__PURE__ */ new Set([...s, ...l])];
+  let d = [];
+  return c.length && (d = await xT(t, e, c)), [.../* @__PURE__ */ new Set([...c, ...d])];
 }
 async function K7(t, e, r) {
   var a;
@@ -35424,8 +35425,9 @@ async function W7({ flatmapAPI: t, knowledgeSource: e, origins: r, destinations:
     v = f[1], h = ((w = (b = C == null ? void 0 : C.results) == null ? void 0 : b.values) == null ? void 0 : w.map((k) => k[1])) || [];
   } else
     v = f[0];
-  const p = ((E = (x = v == null ? void 0 : v.results) == null ? void 0 : x.values) == null ? void 0 : E.map((C) => C[1])) || [], g = [.../* @__PURE__ */ new Set([...h, ...p])], y = await xT(t, e, g);
-  return [.../* @__PURE__ */ new Set([...g, ...y])];
+  const p = ((E = (x = v == null ? void 0 : v.results) == null ? void 0 : x.values) == null ? void 0 : E.map((C) => C[1])) || [], g = [.../* @__PURE__ */ new Set([...h, ...p])];
+  let y = [];
+  return g.length && (y = await xT(t, e, g)), [.../* @__PURE__ */ new Set([...g, ...y])];
 }
 const up = [];
 async function S7(t, e) {

package/dist/map-utilities.umd.cjs

@@ -465,6 +465,6 @@ Licensed under The MIT License (http://opensource.org/licenses/MIT)
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Object.keys(this.connectionEntry).length>0}},watch:{drawnType:function(){this.disabledToolbarConnectionIcon(!0)},activeDrawMode:function(t){this.updateToolbarIcons(t,"mode"),t==="Delete"&&(this.connectionDisplay=!1)},activeDrawTool:function(t){this.updateToolbarIcons(t,"tool"),t||(this.connectionDisplay=!1)},newlyDrawnExist:function(t){t&&(this.connectionDisplay=!0)},connectionExist:function(t){this.disabledToolbarConnectionIcon(!t),t||(this.connectionDisplay=!1)},connectionDisplay:function(t){this.activeToolbarConnectionIcon(t),t?this.dialogCssHacks():this.$emit("featureTooltip",void 0)},dialogPosition:{handler:function(){const t=this.$el.getBoundingClientRect();this.dialogPosition.offsetX=t.x,this.dialogPosition.offsetY=t.y},deep:!0,once:!0}},methods:{iconDisabled:function(t){return this.toolbarIcons.filter(e=>e.name===t)[0].disabled},modeClickEvent:function(t){if(!this.iconDisabled(t)){const e=this.activeDrawMode===t?void 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e=this.$el.querySelector(`.draw${t.name}`);e&&(t.active?e.classList.add("active"):e.classList.remove("active"),t.disabled?e.classList.add("disabled"):e.classList.remove("disabled"))})})},dialogCssHacks:function(){this.$nextTick(()=>{const t=this.$el.querySelector(".connection-dialog");IH(this.mapCanvas.containerHTML,t);let e,r;const n=this.mapCanvas.containerHTML.getBoundingClientRect(),a=t.getBoundingClientRect();this.dialogPosition.x>n.width/2?e=this.dialogPosition.x-a.width:e=this.dialogPosition.x,this.dialogPosition.y>n.height/2?r=this.dialogPosition.y-a.height:r=this.dialogPosition.y,t.style.transform=`translate(${e-this.dialogPosition.offsetX}px, ${r-this.dialogPosition.offsetY}px)`})},hoverIndex:function(t){return this.hoverVisibilities.findIndex(e=>e.ref===t)},showTooltip:function(t){this.$emit("showTooltip",t)},hideTooltip:function(t){this.$emit("hideTooltip",t)},dialogPopUpPositionHandler:function(t){t.preventDefault(),this.dialogPosition.x=t.clientX,this.dialogPosition.y=t.clientY,this.activeDrawTool==="Point"&&this.dialogCssHacks()}},mounted:function(){this.$nextTick(()=>{this.toolbarCssHacks(),this.mapCanvas&&this.mapCanvas.containerHTML.querySelector(this.mapCanvas.class).addEventListener("click",this.dialogPopUpPositionHandler,!1)})},destroyed:function(){this.mapCanvas&&this.mapCanvas.containerHTML.querySelector(this.mapCanvas.class).removeEventListener("click",this.dialogPopUpPositionHandler,!1)}},DH={class:"toolbar-container"},OH={class:"toolbar-icons"};function PH(t,e,r,n,a,i){const o=s.resolveComponent("map-svg-sprite-color"),l=s.resolveComponent("map-svg-icon"),c=Oa,u=mH;return s.openBlock(),s.createElementBlock("div",DH,[s.createVNode(o),s.createElementVNode("div",OH,[i.showEditModeIcon?(s.openBlock(),s.createBlock(c,{key:0,content:"Edit Mode",placement:"top",teleported:!1,trigger:"manual",width:"100","popper-class":"flatmap-popper",visible:r.hoverVisibilities[i.hoverIndex("editPopover")].value,ref:"editPopover"},{reference:s.withCtx(()=>[s.createVNode(l,{icon:"comment",class:"icon-button drawEdit",onClick:e[0]||(e[0]=d=>i.modeClickEvent("Edit")),onMouseover:e[1]||(e[1]=d=>i.showTooltip(i.hoverIndex("editPopover"))),onMouseout:e[2]||(e[2]=d=>i.hideTooltip(i.hoverIndex("editPopover")))})]),_:1},8,["visible"])):s.createCommentVNode("",!0),i.showDeleteModeIcon?(s.openBlock(),s.createBlock(c,{key:1,content:"Delete 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n=Array.isArray(r)?r:[r],a=n[0].startsWith("ilxtr:"),i=a?23:1,o=a?"path_id":"feature_id",l=a?n:[],c=await On({flatmapAPI:t,knowledgeSource:e,queryId:i,parameters:[{column:o,value:n}]}),u=((p=(v=c==null?void 0:c.results)==null?void 0:v.values)==null?void 0:p.map(g=>g[1]))||[],d=[...new Set([...l,...u])];let f=[];return d.length&&(f=await Cg(t,e,d)),[...new Set([...d,...f])]}async function GK(t,e,r){var a;const n=await On({flatmapAPI:t,knowledgeSource:e,queryId:1,parameters:[{column:"feature_id",value:r}]});if((a=n==null?void 0:n.results)!=null&&a.values){const i=n.results.values.map(o=>o[1]);return[...new Set(i)]}return[]}async function UK(t,e,r){var a;const n=await On({flatmapAPI:t,knowledgeSource:e,queryId:1,parameters:[{column:"feature_id",value:r}]});if((a=n==null?void 0:n.results)!=null&&a.values){const i=n.results.values.map(o=>o[1]);return[...new Set(i)]}return[]}async function jK(t,e,r){var a;const n=await On({flatmapAPI:t,knowledgeSource:e,queryId:2,parameters:[{column:"feature_id",value:r}]});if((a=n==null?void 0:n.results)!=null&&a.values){const i=n.results.values.map(o=>o[1]);return[...new Set(i)]}return[]}function wg(t){const e=[];for(const r of t){const n=JSON.parse(r);Array.isArray(n)&&n.length>=2&&Array.isArray(n[1])&&n[1].length===0&&e.push(n[0])}return e}async function Cg(t,e,r){var a;const n=await On({flatmapAPI:t,knowledgeSource:e,queryId:26,parameters:[{column:"path_id",value:r}]});if((a=n==null?void 0:n.results)!=null&&a.values){const i=n.results.values.map(o=>o[2]);return[...new Set(i)]}return[]}async function WK({flatmapAPI:t,knowledgeSource:e,origins:r,destinations:n,vias:a}){var w,C,x,k;const i=wg(r),o=wg(n),l=wg(a),c=[{column:"source_feature_id",value:i},{column:"via_feature_id",value:l},{column:"dest_feature_id",value:o}],u=[{column:"source_node_id",value:r},{column:"via_node_id",value:a},{column:"dest_node_id",value:n}],d=c.some(E=>Array.isArray(E.value)&&E.value.length>0),f=[On({flatmapAPI:t,knowledgeSource:e,queryId:24,parameters:u})];d&&f.push(On({flatmapAPI:t,knowledgeSource:e,queryId:25,parameters:c}));const h=await Promise.all(f);let v=[],p;if(d){const E=h[0];p=h[1],v=((C=(w=E==null?void 0:E.results)==null?void 0:w.values)==null?void 0:C.map(_=>_[1]))||[]}else p=h[0];const g=((k=(x=p==null?void 0:p.results)==null?void 0:x.values)==null?void 0:k.map(E=>E[1]))||[],m=[...new Set([...v,...g])];let y=[];return m.length&&(y=await Cg(t,e,m)),[...new Set([...m,...y])]}const Eg=[];async function YK(t,e){const r=e.filter(i=>Eg.some(o=>o.taxon===i)),n=Eg.filter(i=>r.includes(i.taxon)),a=e.filter(i=>!r.includes(i));if(a.length){const i=await t.queryLabels(a);if(i.length)return i.forEach(o=>{let{entity:l,label:c}=o;c==="Mammalia"&&(c="Mammalia not otherwise specified");const u={taxon:l,label:c};n.push(u),Eg.push(u)}),n}else return n}async function ZK(t,e,r){const n=`${t}knowledge/query/`,a={sql:e,params:r};try{const i=await fetch(n,{method:"POST",headers:{Accept:"application/json; charset=utf-8","Content-Type":"application/json"},body:JSON.stringify(a)});if(!i.ok)throw new Error(`Cannot access ${n}`);return await i.json()}catch{return{values:[]}}}async function k_(t,e){return e.length?await(await ZK(t,`select entity, knowledge from knowledge
       where entity in (?${", ?".repeat(e.length-1)})
       order by source desc`,[...e])).values:[]}function XK(t){var r;const e=(r=t["node-phenotypes"])==null?void 0:r["ilxtr:hasSomaLocatedIn"];return Array.isArray(t.connectivity)&&t.connectivity.length>0&&Array.isArray(e)&&e.length>0}function JK(t){var a,i;const e=(a=t["node-phenotypes"])==null?void 0:a["ilxtr:hasAxonPresynapticElementIn"],r=(i=t["node-phenotypes"])==null?void 0:i["ilxtr:hasAxonSensorySubcellularElementIn"],n=Array.isArray(e)&&e.length>0||Array.isArray(r)&&r.length>0;return Array.isArray(t.connectivity)&&t.connectivity.length>0&&n}function QK(t){var n,a,i;if(!Array.isArray(t.connectivity)||t.connectivity.length===0)return!1;const e=new Set((((n=t["node-phenotypes"])==null?void 0:n["ilxtr:hasSomaLocatedIn"])||[]).map(o=>o[0])),r=new Set([...(((a=t["node-phenotypes"])==null?void 0:a["ilxtr:hasAxonPresynapticElementIn"])||[]).map(o=>o[0]),...(((i=t["node-phenotypes"])==null?void 0:i["ilxtr:hasAxonSensorySubcellularElementIn"])||[]).map(o=>o[0])]);return t.connectivity.some(o=>{const[l,c]=o,u=l[0],d=c[0];return!e.has(u)&&!r.has(d)})}function xg(t){if(!Array.isArray(t.connectivity))return[];const e=new Set;return t.connectivity.forEach(r=>{Array.isArray(r)&&r.length&&r.forEach(n=>{if(Array.isArray(n)&&typeof n[0]=="string"){const a=JSON.stringify(n);e.add(a)}})}),Array.from(e)}function Lr(t,e){var n;const r=(n=t["node-phenotypes"])==null?void 0:n[e];return Array.isArray(r)?r:[]}async function kg(t,e,r){const n=Array.from(new Map(r.map(f=>[JSON.stringify(f),f])).values()),a=n.flat(1/0),i=[...new Set(a)],l=(await k_(t,i)).reduce((f,h)=>{const v=h[0],p=JSON.parse(h[1]);return p.source===e&&f.push({id:v,label:p.label}),f},[]),c=[];return[...n.map(f=>{const h=f.flat(),v=[];for(let p=0;p<h.length;p++){const g=l.find(m=>m.id===h[p]);g&&(v.push(g.label),p>0&&c.push({key:[h[p],[]],label:g.label}))}return{key:f,label:v.join(", ")}}),...c].filter((f,h,v)=>h===v.findIndex(p=>p.label===f.label))}async function S_(t,e,r){const n=[];return r.forEach(a=>{if(!Array.isArray(a.connectivity)||a.connectivity.length===0)return;const i=new Set(xg(a));Lr(a,"ilxtr:hasSomaLocatedIn").forEach(o=>{const l=JSON.stringify(o);i.has(l)&&n.push(o)})}),await kg(t,e,n)}async function __(t,e,r){const n=[];return r.forEach(a=>{if(!Array.isArray(a.connectivity)||a.connectivity.length===0)return;const i=new Set(xg(a));[...Lr(a,"ilxtr:hasAxonPresynapticElementIn"),...Lr(a,"ilxtr:hasAxonSensorySubcellularElementIn")].forEach(o=>{const l=JSON.stringify(o);i.has(l)&&n.push(o)})}),await kg(t,e,n)}async function T_(t,e,r){const n=[];return r.forEach(a=>{if(!Array.isArray(a.connectivity)||a.connectivity.length===0)return;const i=new Set(xg(a));[...Lr(a,"ilxtr:hasAxonLeadingToSensorySubcellularElementIn"),...Lr(a,"ilxtr:hasAxonLocatedIn")].forEach(o=>{const l=JSON.stringify(o);i.has(l)&&n.push(o)})}),await kg(t,e,n)}function N_(t,e){return t.filter(r=>!Array.isArray(r.connectivity)||r.connectivity.length===0?!1:Lr(r,"ilxtr:hasSomaLocatedIn").some(a=>e.map(i=>JSON.stringify(i)).includes(JSON.stringify(a))))}function I_(t,e){return t.filter(r=>!Array.isArray(r.connectivity)||r.connectivity.length===0?!1:[...Lr(r,"ilxtr:hasAxonPresynapticElementIn"),...Lr(r,"ilxtr:hasAxonSensorySubcellularElementIn")].some(a=>e.map(i=>JSON.stringify(i)).includes(JSON.stringify(a))))}function B_(t,e){return t.filter(r=>!Array.isArray(r.connectivity)||r.connectivity.length===0?!1:[...Lr(r,"ilxtr:hasAxonLeadingToSensorySubcellularElementIn"),...Lr(r,"ilxtr:hasAxonLocatedIn")].some(a=>e.map(i=>JSON.stringify(i)).includes(JSON.stringify(a))))}async function eG({knowledge:t,origins:e,destinations:r,vias:n}){let a=t;return e.length&&(a=N_(a,e)),r.length&&(a=I_(a,r)),n.length&&(a=B_(a,n)),a}async function tG(t,e,r,n){let a=[];const i=[];if(e){if(e&&typeof e.featureFilterRanges=="function"){const v=e.featureFilterRanges();for(const[p,g]of Object.entries(v)){let m={key:`flatmap.connectivity.${p}`,label:"",children:[]},y=[];if(p==="kind"){m.label="Pathways";for(const b of g){const w=n.find(C=>C.type===b);w&&y.push({key:`${m.key}.${b}`,label:w.label,colour:w.colour,colourStyle:"line",dashed:w.dashed})}}else if(p==="taxons"){m.label="Studied in";const b=await YK(e,e.taxonIdentifiers);if(b.length)for(const w of g){const C=b.find(x=>x.taxon===w);C&&y.push({key:`${m.key}.${w}`,label:`${C.label} `})}}else if(p==="alert"){m.label="Alert";for(const b of["with","without"])y.push({key:`${m.key}.${b}`,label:`${b} alerts`})}m.children=y.sort((b,w)=>b.label.localeCompare(w.label)),m.label&&m.children.length&&a.push(m)}}const o=e.pathways.paths,l=r.reduce((v,p)=>{const g=p.id;if(g){const m=o[g];if(m&&m.connectivity&&m["node-phenotypes"]){const y=m.connectivity,b=m["node-phenotypes"];p.connectivity=[...y];for(let w in p["node-phenotypes"])b[w]&&(p["node-phenotypes"][w]=[...b[w]]);v.push(JSON.parse(JSON.stringify(p)))}}return v},[]),c=e.knowledgeSource,u=await S_(t,c,l),d=await T_(t,c,l),f=await __(t,c,l),h=(v,p)=>{const g=JSON.stringify(p.key);return{key:`flatmap.connectivity.source.${v}.${g}`,label:p.label||g}};for(const v of["origin","via","destination","all"]){let p=[];if(v==="origin")p=u.map(g=>h(v,g));else if(v==="via")p=d.map(g=>h(v,g));else if(v==="destination")p=f.map(g=>h(v,g));else{const g=[...u.map(y=>h(v,y)),...d.map(y=>h(v,y)),...f.map(y=>h(v,y))],m=new Set;p=g.filter(y=>m.has(y.key)?!1:(m.add(y.key),!0))}p=p.sort((g,m)=>{const y=C=>/^[a-zA-Z]/.test(C),b=y(g.label),w=y(m.label);return b&&!w?-1:!b&&w?1:g.label.localeCompare(m.label)}),p.length&&i.push({key:`flatmap.connectivity.source.${v}`,label:v,children:p})}i.length&&a.push(...i)}return a}Te.AnnotationPopup=g0,Te.ConnectivityGraph=$9,Te.ConnectivityList=hg,Te.CopyToClipboard=us,Te.CreateTooltipContent=gM,Te.DrawToolbar=AH,Te.ExternalResourceCard=bg,Te.HelpModeDialog=VH,Te.Tooltip=DK,Te.TreeControls=zK,Te.competencyQuery=On,Te.extractDestinationItems=__,Te.extractOriginItems=S_,Te.extractViaItems=T_,Te.fetchLabels=k_,Te.filterDestinations=JK,Te.filterOrigins=XK,Te.filterViaLocations=QK,Te.findPathsByDestinationItem=I_,Te.findPathsByOriginItem=N_,Te.findPathsByViaItem=B_,Te.getFlatmapFilterOptions=tG,Te.queryAllConnectedPaths=KK,Te.queryForwardBackwardConnections=Cg,Te.queryPathsByDestination=jK,Te.queryPathsByOrigin=GK,Te.queryPathsByRoute=WK,Te.queryPathsByRouteFromKnowledge=eG,Te.queryPathsByViaLocation=UK,Object.defineProperty(Te,Symbol.toStringTag,{value:"Module"})});

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@abi-software/map-utilities",
-  "version": "1.6.1-beta.8",
+  "version": "1.7.0",
   "files": [
     "dist/*",
     "src/*",

package/src/components/CompetencyQueries/CompetencyQueries.js

@@ -104,7 +104,10 @@ async function queryAllConnectedPaths(flatmapAPI, knowledgeSource, featureId) {
   const combined = [...new Set([...originalPaths, ...paths])];
 
   // Continue to forward and backward connections
-  const additionalPaths = await queryForwardBackwardConnections(flatmapAPI, knowledgeSource, combined);
+  let additionalPaths = [];
+  if (combined.length) {
+    additionalPaths = await queryForwardBackwardConnections(flatmapAPI, knowledgeSource, combined);
+  }
   const total = [...new Set([...combined, ...additionalPaths])];
 
   return total;
@@ -338,7 +341,10 @@ async function queryPathsByRoute({ flatmapAPI, knowledgeSource, origins, destina
   const combined = [...new Set([...pathsF, ...paths])];
 
   // Continue to forward and backward connections
-  const additionalPaths = await queryForwardBackwardConnections(flatmapAPI, knowledgeSource, combined);
+  let additionalPaths = [];
+  if (combined.length) {
+    additionalPaths = await queryForwardBackwardConnections(flatmapAPI, knowledgeSource, combined);
+  }
   const total = [...new Set([...combined, ...additionalPaths])];
 
   return total;