@abi-software/map-side-bar 2.3.1 → 2.4.0-alpha-1

package/src/algolia/algolia.js

@@ -1,242 +1,255 @@
-/* eslint-disable no-alert, no-console */
-import algoliasearch from 'algoliasearch'
-
-// export `createAlgoliaClient` to use it in page components
-export class AlgoliaClient {
-  constructor(algoliaId, algoliaKey, PENNSIEVE_API_LOCATION = 'https://api.pennsieve.io') {
-    this.client = algoliasearch(
-      algoliaId,
-      algoliaKey
-    )
-    this.PENNSIEVE_API_LOCATION = PENNSIEVE_API_LOCATION
-    this.anatomyFacetLabels = []
-  }
-  initIndex(ALGOLIA_INDEX) {
-    this.index = this.client.initIndex(ALGOLIA_INDEX);
-  }
-
-  getAlgoliaFacets(propPathMapping) {
-    const facetPropPaths = propPathMapping.map(facet => facet.facetPropPath)
-    const facetSubpropPaths = propPathMapping.map(item => item.facetSubpropPath)
-    let facetData = []
-    let facetId = 0
-    return this.index
-      .search('', {
-        sortFacetValuesBy: 'alpha',
-        facets: facetPropPaths.concat(facetSubpropPaths),
-      })
-      .then(response => {
-        facetPropPaths.map((facetPropPath) => {
-          const parentFacet = propPathMapping.find(item => item.facetPropPath == facetPropPath)
-          var children = []
-          const responseFacets = response.facets
-          if (responseFacets === undefined) {return}
-          const responseFacetChildren =
-            responseFacets[facetPropPath] == undefined // if no facets, return empty object
-              ? {}
-              : responseFacets[facetPropPath]
-          const allPossibleChildrenSubfacets = parentFacet && responseFacets[parentFacet.facetSubpropPath] ? Object.keys(responseFacets[parentFacet.facetSubpropPath]) : []
-          // Loop through all subfacets and find the ones that are children of the current facet
-          Object.keys(responseFacetChildren).map(facet => {
-            const childrenSubfacets = allPossibleChildrenSubfacets.reduce((filtered, childFacetInfo) => {
-              const info = childFacetInfo.split('.');
-              if (info.length !== 2) {
-                return filtered;
-              }
-              if (facet === info[0]) {
-                filtered.push({
-                  label: info[1], 
-                  id: facetId++,
-                  facetPropPath: `${parentFacet ? parentFacet.facetSubpropPath : undefined}`
-                });
-              }
-              return filtered;
-            }, []); // Provide an empty array as the initial value
-            let newChild = {
-              label: facet,
-              id: facetId++,
-              facetPropPath: facetPropPath
-            }
-            if (childrenSubfacets.length > 0) {
-              newChild.children = childrenSubfacets
-            }
-            children.push(newChild)
-          })
-          if (children.length > 0) {
-            facetData.push({
-              label: parentFacet ? parentFacet.label : '',
-              id: facetId++,
-              children: children,
-              key: facetPropPath
-            })
-          }
-        })
-        return facetData
-      })
-  }
-
-  // Returns all DOIs of all versions for a given discover dataset
-  _discoverAllDois(discoverId, PENNSIEVE_API_LOCATION = 'https://api.pennsieve.io') {
-    return new Promise(resolve => {
-      fetch(`${PENNSIEVE_API_LOCATION}/discover/datasets/${discoverId}/versions`).then(r => r.json()).then(dataset => {
-        resolve(dataset.map(version => version.doi))
-      })
-    })
-  }
-
-  // Get all dois given a list of discoverIds
-  _expandDois(discoverIds, PENNSIEVE_API_LOCATION = 'https://api.pennsieve.io') {
-    return new Promise(resolve => {
-      let promiseList = discoverIds.map(discoverId => this._discoverAllDois(discoverId, PENNSIEVE_API_LOCATION))
-      Promise.all(promiseList).then((values) => {
-        resolve(values.flat())
-      });
-    })
-  }
-
-  _processResultsForCards(results) {
-    let newResults = []
-    let newResult = {}
-    for (let res of results) {
-      newResult = { ...res }
-      newResult = {
-        anatomy: res.anatomy ? res.anatomy.organ.map((organ => organ.curie)) : undefined,
-        doi: res.item.curie.split(':')[1],
-        name: res.item.name,
-        description: res.item.description,
-        updated: res.pennsieve ? res.pennsieve.updatedAt : undefined,
-        publishDate: res.pennsieve ? res.pennsieve.publishDate : undefined,
-        datasetId: res.objectID,
-        detailsReady: false
-      }
-      newResults.push(newResult)
-    }
-    return newResults
-  }
-
-  _processAnatomy(hits) {
-    let foundKeyWords = []
-    let foundLabels = []
-    let uniqueLabels = []
-    let uniqueKeywords = []
-    hits.forEach(hit => {
-      if (hit.item && hit.item.keywords) {
-        hit.item.keywords.forEach(keywordObj => {
-          let keyword = keywordObj.keyword.toUpperCase()
-          if (keyword.includes('UBERON') || keyword.includes('ILX')) {
-            foundKeyWords.push(this._processUberonURL(keyword))
-          }
-        })
-      }
-      if (hit.anatomy && hit.anatomy.organ ) {
-        hit.anatomy.organ.forEach(anatomy => {
-          if (anatomy.curie) {
-            foundKeyWords.push(anatomy.curie)
-            foundLabels.push(anatomy.name)
-          }
-        })
-      }
-    })
-    uniqueKeywords = [...new Set(foundKeyWords) ]
-    uniqueLabels = [...new Set(foundLabels) ]
-    this.anatomyFacetLabels = uniqueLabels
-    return uniqueKeywords
-  }
-
-  _processUberonURL(url) {
-    let ub = url.split('/').pop()
-    return ub.replace('_', ':')
-  }
-
-  /**
-   * Get Search results
-   * This is using fetch from the Algolia API
-   */
-  search(filter, query = '', hitsperPage = 10, page = 1) {
-    return new Promise(resolve => {
-      this.index
-        .search(query, {
-          facets: ['*'],
-          hitsPerPage: hitsperPage,
-          page: page - 1,
-          filters: filter,
-          attributesToHighlight: [],
-          attributesToRetrieve: [
-            'pennsieve.publishDate',
-            'pennsieve.updatedAt',
-            'item.curie',
-            'item.name',
-            'item.description',
-            'objectID',
-            'anatomy.organ.curie'
-          ],
-        })
-        .then(response => {
-          let searchData = {
-            items: this._processResultsForCards(response.hits),
-            total: response.nbHits,
-            discoverIds: response.hits.map(r => r.pennsieve ? r.pennsieve.identifier : r.objectID),
-            dois: response.hits.map(r => r.item.curie.split(':')[1])
-          }
-          resolve(searchData)
-        })
-    })
-  }
-
-  /**
- * Get key words
- * This is used to return all keywords for a given search. Note that you often want the hits per page to be maxed out
- */
-  anatomyInSearch(filter, query = '', hitsperPage = 999999, page = 1) {
-    return new Promise(resolve => {
-      this.index
-        .search(query, {
-          facets: ['*'],
-          hitsPerPage: hitsperPage,
-          page: page - 1,
-          filters: filter,
-          attributesToHighlight: [],
-          attributesToRetrieve: [
-            'objectID',
-            'item.keywords.keyword',
-            'anatomy.organ.name',
-            'anatomy.organ.curie'
-          ],
-        })
-        .then(response => {
-          // Saving the line below incase we want to starty using keywords again
-          // let anatomyAsUberons = this._processAnatomy(response.hits)
-
-          resolve({
-            forFlatmap: this.processResultsForFlatmap(response.hits),
-            forScaffold: this.processResultsForScaffold(response.hits)
-          })
-        })
-    })
-  }
-  processResultsForFlatmap(hits) {
-    let curieForDatsets = hits.map(h=>({
-      id: h.objectID,
-      terms: h.anatomy? h.anatomy.organ.map(o=>o.curie) : []
-    }))
-    return curieForDatsets 
-  }
-  processResultsForScaffold(hits) {
-    let numberOfDatasetsForAnatomy = {}
-    hits.forEach(hit => {
-      if (hit.anatomy && hit.anatomy.organ ) {
-        hit.anatomy.organ.forEach(anatomy => {
-          if (anatomy.name) {
-            if (numberOfDatasetsForAnatomy[anatomy.name]) {
-              numberOfDatasetsForAnatomy[anatomy.name]++
-            } else {
-              numberOfDatasetsForAnatomy[anatomy.name] = 1
-            }
-          }
-        })
-      }
-    })
-    return numberOfDatasetsForAnatomy
-  }
-
-}
+/* eslint-disable no-alert, no-console */
+import algoliasearch from 'algoliasearch'
+
+// export `createAlgoliaClient` to use it in page components
+export class AlgoliaClient {
+  constructor(algoliaId, algoliaKey, PENNSIEVE_API_LOCATION = 'https://api.pennsieve.io') {
+    this.client = algoliasearch(
+      algoliaId,
+      algoliaKey
+    )
+    this.PENNSIEVE_API_LOCATION = PENNSIEVE_API_LOCATION
+    this.anatomyFacetLabels = []
+  }
+  initIndex(ALGOLIA_INDEX) {
+    this.index = this.client.initIndex(ALGOLIA_INDEX);
+  }
+
+  getAlgoliaFacets(propPathMapping) {
+    const facetPropPaths = propPathMapping.map(facet => facet.facetPropPath)
+    const facetSubpropPaths = propPathMapping.map(item => item.facetSubpropPath)
+    let facetData = []
+    let facetId = 0
+    return this.index
+      .search('', {
+        sortFacetValuesBy: 'alpha',
+        facets: facetPropPaths.concat(facetSubpropPaths),
+      })
+      .then(response => {
+        facetPropPaths.map((facetPropPath) => {
+          const parentFacet = propPathMapping.find(item => item.facetPropPath == facetPropPath)
+          var children = []
+          const responseFacets = response.facets
+          if (responseFacets === undefined) {return}
+          const responseFacetChildren =
+            responseFacets[facetPropPath] == undefined // if no facets, return empty object
+              ? {}
+              : responseFacets[facetPropPath]
+          const allPossibleChildrenSubfacets = parentFacet && responseFacets[parentFacet.facetSubpropPath] ? Object.keys(responseFacets[parentFacet.facetSubpropPath]) : []
+          // Loop through all subfacets and find the ones that are children of the current facet
+          Object.keys(responseFacetChildren).map(facet => {
+            const childrenSubfacets = allPossibleChildrenSubfacets.reduce((filtered, childFacetInfo) => {
+              const info = childFacetInfo.split('.');
+              if (info.length !== 2) {
+                return filtered;
+              }
+              if (facet === info[0]) {
+                filtered.push({
+                  label: info[1], 
+                  id: facetId++,
+                  facetPropPath: `${parentFacet ? parentFacet.facetSubpropPath : undefined}`
+                });
+              }
+              return filtered;
+            }, []); // Provide an empty array as the initial value
+            let newChild = {
+              label: facet,
+              id: facetId++,
+              facetPropPath: facetPropPath
+            }
+            if (childrenSubfacets.length > 0) {
+              newChild.children = childrenSubfacets
+            }
+            children.push(newChild)
+          })
+          if (children.length > 0) {
+            facetData.push({
+              label: parentFacet ? parentFacet.label : '',
+              id: facetId++,
+              children: children,
+              key: facetPropPath
+            })
+          }
+        })
+        return facetData
+      })
+  }
+
+  // Returns all DOIs of all versions for a given discover dataset
+  _discoverAllDois(discoverId, PENNSIEVE_API_LOCATION = 'https://api.pennsieve.io') {
+    return new Promise(resolve => {
+      fetch(`${PENNSIEVE_API_LOCATION}/discover/datasets/${discoverId}/versions`).then(r => r.json()).then(dataset => {
+        resolve(dataset.map(version => version.doi))
+      })
+    })
+  }
+
+  // Get all dois given a list of discoverIds
+  _expandDois(discoverIds, PENNSIEVE_API_LOCATION = 'https://api.pennsieve.io') {
+    return new Promise(resolve => {
+      let promiseList = discoverIds.map(discoverId => this._discoverAllDois(discoverId, PENNSIEVE_API_LOCATION))
+      Promise.all(promiseList).then((values) => {
+        resolve(values.flat())
+      });
+    })
+  }
+
+  _processResultsForCards(results) {
+    let newResults = []
+    let newResult = {}
+    for (let res of results) {
+      newResult = { ...res }
+      newResult = {
+        dataSource: 'SPARC',
+        anatomy: res.anatomy ? res.anatomy.organ.map((organ => organ.curie)) : undefined,
+        doi: res.item.curie.split(':')[1],
+        name: res.item.name,
+        description: res.item.description,
+        updated: res.pennsieve ? res.pennsieve.updatedAt : undefined,
+        publishDate: res.pennsieve ? res.pennsieve.publishDate : undefined,
+        datasetId: res.objectID,
+        detailsReady: false
+      }
+      newResults.push(newResult)
+    }
+    return newResults
+  }
+
+  _processAnatomy(hits) {
+    let foundKeyWords = []
+    let foundLabels = []
+    let uniqueLabels = []
+    let uniqueKeywords = []
+    hits.forEach(hit => {
+      if (hit.item && hit.item.keywords) {
+        hit.item.keywords.forEach(keywordObj => {
+          let keyword = keywordObj.keyword.toUpperCase()
+          if (keyword.includes('UBERON') || keyword.includes('ILX')) {
+            foundKeyWords.push(this._processUberonURL(keyword))
+          }
+        })
+      }
+      if (hit.anatomy && hit.anatomy.organ ) {
+        hit.anatomy.organ.forEach(anatomy => {
+          if (anatomy.curie) {
+            foundKeyWords.push(anatomy.curie)
+            foundLabels.push(anatomy.name)
+          }
+        })
+      }
+    })
+    uniqueKeywords = [...new Set(foundKeyWords) ]
+    uniqueLabels = [...new Set(foundLabels) ]
+    this.anatomyFacetLabels = uniqueLabels
+    return uniqueKeywords
+  }
+
+  _processUberonURL(url) {
+    let ub = url.split('/').pop()
+    return ub.replace('_', ':')
+  }
+
+  /**
+   * Get Search results
+   * This is using fetch from the Algolia API
+   */
+  search(filter, query = '', offset = 0, length = 8) {
+    // If the length is 0, return an empty result
+    if (length === 0) {
+      return new Promise(resolve => {
+        resolve({
+          items: [],
+          total: 0,
+          discoverIds: [],
+          dois: []
+        })
+      })
+    } else {
+      return new Promise(resolve => {
+        this.index
+          .search(query, {
+            facets: ['*'],
+            offset: offset,
+            length: length,
+            filters: filter,
+            attributesToHighlight: [],
+            attributesToRetrieve: [
+              'pennsieve.publishDate',
+              'pennsieve.updatedAt',
+              'item.curie',
+              'item.name',
+              'item.description',
+              'objectID',
+              'anatomy.organ.curie'
+            ],
+          })
+          .then(response => {
+            let searchData = {
+              items: this._processResultsForCards(response.hits),
+              total: response.nbHits,
+              discoverIds: response.hits.map(r => r.pennsieve ? r.pennsieve.identifier : r.objectID),
+              dois: response.hits.map(r => r.item.curie.split(':')[1])
+            }
+            resolve(searchData)
+          })
+      })
+    }
+  }
+
+  /**
+ * Get key words
+ * This is used to return all keywords for a given search. Note that you often want the hits per page to be maxed out
+ */
+  anatomyInSearch(filter, query = '', hitsperPage = 999999, page = 1) {
+    return new Promise(resolve => {
+      this.index
+        .search(query, {
+          facets: ['*'],
+          hitsPerPage: hitsperPage,
+          page: page - 1,
+          filters: filter,
+          attributesToHighlight: [],
+          attributesToRetrieve: [
+            'objectID',
+            'item.keywords.keyword',
+            'anatomy.organ.name',
+            'anatomy.organ.curie'
+          ],
+        })
+        .then(response => {
+          // Saving the line below incase we want to starty using keywords again
+          // let anatomyAsUberons = this._processAnatomy(response.hits)
+
+          resolve({
+            forFlatmap: this.processResultsForFlatmap(response.hits),
+            forScaffold: this.processResultsForScaffold(response.hits)
+          })
+        })
+    })
+  }
+  processResultsForFlatmap(hits) {
+    let curieForDatsets = hits.map(h=>({
+      id: h.objectID,
+      terms: h.anatomy? h.anatomy.organ.map(o=>o.curie) : []
+    }))
+    return curieForDatsets 
+  }
+  processResultsForScaffold(hits) {
+    let numberOfDatasetsForAnatomy = {}
+    hits.forEach(hit => {
+      if (hit.anatomy && hit.anatomy.organ ) {
+        hit.anatomy.organ.forEach(anatomy => {
+          if (anatomy.name) {
+            if (numberOfDatasetsForAnatomy[anatomy.name]) {
+              numberOfDatasetsForAnatomy[anatomy.name]++
+            } else {
+              numberOfDatasetsForAnatomy[anatomy.name] = 1
+            }
+          }
+        })
+      }
+    })
+    return numberOfDatasetsForAnatomy
+  }
+
+}