@abi-software/map-side-bar 2.3.0 → 2.4.0-alpha-1

package/src/components/SearchFilters.vue

@@ -1,1006 +1,1023 @@
-<template>
-  <div class="filters">
-    <MapSvgSpriteColor />
-    <div class="cascader-tag" v-if="presentTags.length > 0">
-      <el-tag
-        class="ml-2"
-        type="info"
-        closable
-        @close="cascadeTagClose(presentTags[0])"
-      >
-        {{ presentTags[0] }}
-      </el-tag>
-      <el-popover
-        v-if="presentTags.length > 1"
-        placement="bottom-start"
-        :width="200"
-        trigger="hover"
-      >
-        <template #default>
-          <div class="el-tags-container">
-            <el-tag
-              v-for="(tag, i) in presentTags.slice(1)"
-              :key="i"
-              class="ml-2"
-              type="info"
-              closable
-              @close="cascadeTagClose(tag)"
-            >
-              {{ tag }}
-            </el-tag>
-          </div>
-        </template>
-        <template #reference>
-          <div class="el-tags-container">
-            <el-tag
-              v-if="presentTags.length > 1"
-              class="ml-2"
-              type="info"
-            >
-              +{{ presentTags.length - 1 }}
-            </el-tag>
-          </div>
-        </template>
-      </el-popover>
-    </div>
-    <transition name="el-zoom-in-top">
-      <span v-show="showFilters" v-loading="!cascaderIsReady" class="search-filters transition-box">
-        <el-cascader
-          class="cascader"
-          ref="cascader"
-          v-model="cascadeSelected"
-          size="large"
-          placeholder=" "
-          :collapse-tags="true"
-          collapse-tags-tooltip
-          :options="options"
-          :props="props"
-          @change="cascadeEvent($event)"
-          @expand-change="cascadeExpandChange"
-          :show-all-levels="true"
-          popper-class="sidebar-cascader-popper"
-        />
-        <div v-if="showFiltersText" class="filter-default-value">Filters</div>
-        <el-popover
-          title="How do filters work?"
-          width="250"
-          trigger="hover"
-          :append-to-body="false"
-          popper-class="popover"
-        >
-          <template #reference>
-            <MapSvgIcon icon="help" class="help" />
-          </template>
-          <div>
-            <strong>Within categories:</strong> OR
-            <br />
-            example: 'heart' OR 'colon'
-            <br />
-            <br />
-            <strong>Between categories:</strong> AND
-            <br />
-            example: 'rat' AND 'lung'
-          </div>
-        </el-popover>
-      </span>
-    </transition>
-    <div class="dataset-shown">
-      <span class="dataset-results-feedback">{{ numberOfResultsText }}</span>
-      <el-select
-        class="number-shown-select"
-        v-model="numberShown"
-        placeholder="10"
-        @change="numberShownChanged($event)"
-      >
-        <el-option
-          v-for="item in numberDatasetsShown"
-          :key="item"
-          :label="item"
-          :value="item"
-        ></el-option>
-      </el-select>
-    </div>
-  </div>
-</template>
-
-<script>
-/* eslint-disable no-alert, no-console */
-import { markRaw } from 'vue'
-import {
-  ElOption as Option,
-  ElSelect as Select,
-  ElPopover as Popover,
-  ElCascader as Cascader,
-} from 'element-plus'
-import speciesMap from './species-map.js'
-import { MapSvgIcon, MapSvgSpriteColor } from "@abi-software/svg-sprite";
-import '@abi-software/svg-sprite/dist/style.css'
-
-import { AlgoliaClient } from '../algolia/algolia.js'
-import { facetPropPathMapping } from '../algolia/utils.js'
-import EventBus from './EventBus.js'
-
-const capitalise = function (txt) {
-  return txt.charAt(0).toUpperCase() + txt.slice(1)
-}
-
-const convertReadableLabel = function (original) {
-  const name = original.toLowerCase()
-  if (speciesMap[name]) {
-    return capitalise(speciesMap[name])
-  } else {
-    return capitalise(name)
-  }
-}
-
-export default {
-  name: 'SearchFilters',
-  components: {
-    MapSvgIcon,
-    MapSvgSpriteColor,
-    Option,
-    Select,
-    Popover,
-    Cascader
-  },
-  props: {
-    /**
-     * Object containing information for
-     * the required viewing.
-     */
-    entry: Object,
-    envVars: {
-      type: Object,
-      default: () => {},
-    },
-  },
-  data: function () {
-    return {
-      cascaderIsReady: false,
-      previousShowAllChecked: {
-        species: false,
-        gender: false,
-        organ: false,
-        datasets: false,
-      },
-      showFilters: true,
-      showFiltersText: true,
-      cascadeSelected: [],
-      cascadeSelectedWithBoolean: [],
-      numberShown: 10,
-      filters: [],
-      facets: ['Species', 'Gender', 'Organ', 'Datasets'],
-      numberDatasetsShown: ['10', '20', '50'],
-      props: { multiple: true },
-      options: [
-        {
-          value: 'Species',
-          label: 'Species',
-          children: [{}],
-        },
-      ],
-      presentTags:[],
-    }
-  },
-  setup() {
-    const cascaderTags = markRaw({});
-    const correctnessCheck = markRaw({
-      term: new Set(),
-      facet: new Set(),
-      facet2: new Set()
-    });
-    return { cascaderTags, correctnessCheck }
-  },
-  computed: {
-    numberOfResultsText: function () {
-      return `${this.entry.numberOfHits} results | Showing`
-    },
-  },
-  methods: {
-    createCascaderItemValue: function (
-      term,
-      facet1 = undefined,
-      facet2 = undefined
-    ) {
-      let value = term
-      if (facet1) value = `${term}>${facet1}`
-      if (facet1 && facet2) value = `${term}>${facet1}>${facet2}`
-      if (!facet1 && facet2)
-        console.warn(
-          `Warning: ${facet2} provided without its parent, this will not be shown in the cascader`
-        )
-      return value
-    },
-    populateCascader: function () {
-      return new Promise((resolve) => {
-        // Algolia facet serach
-        this.algoliaClient
-          .getAlgoliaFacets(facetPropPathMapping)
-          .then((data) => {
-            this.facets = data
-            EventBus.emit('available-facets', data)
-            this.options = data
-
-            // create top level of options in cascader
-            this.options.forEach((facet, i) => {
-              this.options[i].total = this.countTotalFacet(facet)
-
-              this.options[i].label = convertReadableLabel(facet.label)
-              this.options[i].value = this.createCascaderItemValue(
-                facet.key,
-                undefined
-              )
-
-              // put "Show all" as first option
-              this.options[i].children.unshift({
-                value: this.createCascaderItemValue('Show all'),
-                label: 'Show all',
-              })
-
-              // populate second level of options
-              this.options[i].children.forEach((facetItem, j) => {
-                this.options[i].children[j].label = convertReadableLabel(
-                  facetItem.label
-                )
-                this.options[i].children[j].value =
-                  this.createCascaderItemValue(facet.label, facetItem.label)
-                if (
-                  this.options[i].children[j].children &&
-                  this.options[i].children[j].children.length > 0
-                ) {
-                  this.options[i].children[j].children.forEach((term, k) => {
-                    this.options[i].children[j].children[k].label =
-                      convertReadableLabel(term.label)
-                    this.options[i].children[j].children[k].value =
-                      this.createCascaderItemValue(
-                        facet.label,
-                        facetItem.label,
-                        term.label
-                      )
-                  })
-                }
-              })
-            })
-          })
-          .finally(() => {
-            resolve()
-          })
-      })
-    },
-    /**
-     * Create manual events when cascader tag is closed
-     */
-    cascadeTagClose: function (tag) {
-      let manualEvent = []
-
-      Object.entries(this.cascaderTags).map((entry) => {
-        const term = entry[0], facet = entry[1] // Either "Array" or "Object", depends on the cascader item level
-        const option = this.options.filter((option) => option.label == term)[0]
-        const key = option.key
-
-        for (let index = 0; index < option.children.length; index++) {
-          const child = option.children[index]
-          const label = child.label, value = child.value
-
-          if (Array.isArray(facet)) {
-            // push "Show all" if there is no item checked
-            if (facet.length === 0 && label.toLowerCase() === "show all") {
-              manualEvent.push([key, value])
-              break
-              // push all checked items
-            } else if (label !== tag && facet.includes(label))
-              manualEvent.push([key, value])
-          } else {
-            // loop nested cascader items
-            Object.entries(facet).map((entry2) => {
-              const term2 = entry2[0], facet2 = entry2[1] // object key, object value
-
-              if (term2 === label) {
-                child.children.map((child2) => {
-                  const label2 = child2.label, value2 = child2.value
-                  // push all checked items
-                  if (label2 !== tag && facet2.includes(label2))
-                    manualEvent.push([key, value2])
-                })
-              }
-            })
-          }
-        }
-      })
-      this.cascadeEvent(manualEvent)
-    },
-    /**
-     * Re-generate 'cascaderTags' and 'presentTags'
-     * Not able to avoid wrong facet at the moment
-     */
-    tagsChangedCallback: function (event) {
-      if (this.correctnessCheck.term && this.correctnessCheck.facet && this.correctnessCheck.facet2) {
-        this.options.map((option) => {
-          this.correctnessCheck.term.add(option.label)
-          option.children.map((child) => {
-            this.correctnessCheck.facet.add(child.label)
-            if (option.label === 'Anatomical structure' && child.label !== 'Show all') {
-              child.children.map((child2) => {
-                this.correctnessCheck.facet2.add(child2.label)
-              })
-            }
-          })
-        })
-      }
-
-      this.cascaderTags = {}
-      this.presentTags = []
-      event.map((item) => {
-        const { facet, facet2, term } = item
-        if (this.correctnessCheck.term.has(term) && this.correctnessCheck.facet.has(facet)) {
-          if (facet2) {
-            if (this.correctnessCheck.facet2.has(facet2)) {
-              if (term in this.cascaderTags) {
-                if (facet in this.cascaderTags[term]) this.cascaderTags[term][facet].push(facet2)
-                else this.cascaderTags[term][facet] = [facet2]
-              } else {
-                this.cascaderTags[term] = {}
-                this.cascaderTags[term][facet] = [facet2]
-              }
-            }
-          } else {
-            // If 'cascaderTags' has key 'Anatomical structure',
-            // it's value type will be Object (because it has nested facets),
-            // in this case 'push' action will not available.
-            if (term in this.cascaderTags && term !== 'Anatomical structure')
-              this.cascaderTags[term].push(facet)
-            else {
-              if (facet.toLowerCase() !== "show all") this.cascaderTags[term] = [facet]
-              else this.cascaderTags[term] = []
-            }
-          }
-        }
-      })
-
-      Object.values(this.cascaderTags).map((value) => {
-        const extend = Array.isArray(value) ? value : Object.values(value).flat(1)
-        this.presentTags = [...this.presentTags, ...extend]
-      })
-      this.presentTags = [...new Set(this.presentTags)]
-      if (this.presentTags.length > 0) this.showFiltersText = false
-      else this.showFiltersText = true
-    },
-    /**
-     * Support for function 'showAllEventModifierForAutoCheckAll'
-     * Called in function 'populateCascader'
-     */
-    countTotalFacet: function (facet) {
-      if (['anatomy.organ.category.name'].includes(facet.key)) {
-        const count = facet.children.reduce((total, num) => {
-          // The first 'total' will be an object
-          total = typeof total == 'number' ? total : total.children.length
-          return total + num.children.length
-        })
-        return count
-      }
-      return facet.children.length
-    },
-    /**
-     * When check/uncheck all child items, automatically check "Show all"
-     */
-    showAllEventModifierForAutoCheckAll: function (event) {
-      const currentKeys = {}
-      event.map((e) => {
-        const eventKey = e[0]
-        if (eventKey in currentKeys) currentKeys[eventKey] += 1
-        else currentKeys[eventKey] = 1
-      })
-      this.options.map((option) => {
-        const key = option.key
-        const value = option.children.filter((child) => child.label === "Show all")[0].value
-        const total = option.total
-        // Remove events if all child items is checked
-        if (currentKeys[key] === total) {
-          event = event.filter((e) => e[0] !== option.key)
-          delete currentKeys[key]
-        }
-        // Add 'Show all' if facet type not exist in event
-        if (!(key in currentKeys)) event.unshift([key, value])
-      })
-      return event
-    },
-    // cascadeEvent: initiate searches based off cascader changes
-    cascadeEvent: function (eventIn) {
-      let event = [...eventIn]
-      if (event) {
-        // Check for show all in selected cascade options
-
-        event = this.showAllEventModifier(event)
-
-        event = this.showAllEventModifierForAutoCheckAll(event)
-        /**
-         * Move the new added event to the beginning
-         * Otherwise, cascader will show different expand item
-         */
-        if (this.__expandItem__) {
-          let position = 0
-          if (this.__expandItem__.length > 1) {
-            position = 1
-          }
-          const current = event.filter((e) => e[position] == this.__expandItem__[position]);
-          const rest = event.filter((e) => e[position] !== this.__expandItem__[position]);
-          event = [...current, ...rest]
-        }
-        // Create results for the filter update
-        let filterKeys = event
-          .filter((selection) => selection !== undefined)
-          .map((fs) => {
-            let { hString, bString } =
-              this.findHierarachyStringAndBooleanString(fs)
-            let { facet, facet2, term } =
-              this.getFacetsFromHierarchyString(hString)
-            return {
-              facetPropPath: fs[0],
-              facet: facet,
-              facet2: facet2,
-              term: term,
-              AND: bString, // for setting the boolean
-            }
-          })
-
-        // Move results from arrays to object for use on scicrunch (note that we remove 'duplicate' as that is only needed for filter keys)
-        let filters = event
-          .filter((selection) => selection !== undefined)
-          .map((fs) => {
-            let facetSubPropPath = undefined
-            let propPath = fs[0].includes('duplicate')
-              ? fs[0].split('duplicate')[0]
-              : fs[0]
-            let { hString, bString } =
-              this.findHierarachyStringAndBooleanString(fs)
-            let { facet, facet2, term } =
-              this.getFacetsFromHierarchyString(hString)
-            if (facet2) {
-              // We need to change the propPath if we are at the third level of the cascader
-              facet = facet2
-              facetSubPropPath = 'anatomy.organ.name'
-            }
-            return {
-              facetPropPath: propPath,
-              facet: facet,
-              term: term,
-              AND: bString, // for setting the boolean
-              facetSubPropPath: facetSubPropPath, // will be used for filters if we are at the third level of the cascader
-            }
-          })
-        
-        this.$emit('loading', true) // let sidebarcontent wait for the requests
-        this.$emit('filterResults', filters) // emit filters for apps above sidebar
-        this.setCascader(filterKeys) //update our cascader v-model if we modified the event
-        this.cssMods() // update css for the cascader
-      }
-    },
-    //this fucntion is needed as we previously stored booleans in the array of event that
-    //  are stored in the cascader
-    findHierarachyStringAndBooleanString(cascadeEventItem) {
-      let hString, bString
-      if (cascadeEventItem.length >= 3) {
-        if (cascadeEventItem[2] &&
-          (typeof cascadeEventItem[2] === 'string' ||
-          cascadeEventItem[2] instanceof String) &&
-          cascadeEventItem[2].split('>').length > 2) {
-          hString = cascadeEventItem[2]
-          bString = cascadeEventItem.length == 4 ? cascadeEventItem[3] : undefined
-        } else {
-          hString = cascadeEventItem[1]
-          bString = cascadeEventItem[2]
-        }
-      } else {
-        hString = cascadeEventItem[1]
-        bString = undefined
-      }
-      return { hString, bString }
-    },
-    // Splits the terms and facets from the string stored in the cascader
-    getFacetsFromHierarchyString(hierarchyString) {
-      let facet,
-        term,
-        facet2 = undefined
-      let fsSplit = hierarchyString.split('>')
-      if (fsSplit.length == 3) {
-        // if we are at the third level of the cascader
-        facet2 = fsSplit[2]
-        facet = fsSplit[1]
-        term = fsSplit[0]
-      } else {
-        facet = fsSplit[1]
-        term = fsSplit[0]
-      }
-      return { facet, facet2, term }
-    },
-    // showAllEventModifier:  Modifies a cascade event to unclick all selections in category if "show all" is clicked. Also unchecks "Show all" if any secection is clicked
-    // *NOTE* Does NOT remove 'Show all' selections from showing in 'cascadeSelected'
-    showAllEventModifier: function (event) {
-      // check if show all is in the cascader checked option list
-      let hasShowAll = event
-        .map((ev) => (ev ? ev[1].toLowerCase().includes('show all') : false))
-        .includes(true)
-      // remove all selected options below the show all if checked
-      if (hasShowAll) {
-        let modifiedEvent = []
-        let facetMaps = {}
-        //catagorised different facet items
-        for (const i in event) {
-          if (facetMaps[event[i][0]] === undefined) facetMaps[event[i][0]] = []
-          facetMaps[event[i][0]].push(event[i])
-        }
-        // go through each facets
-        for (const facet in facetMaps) {
-          let showAll = undefined
-          // Find the show all item if any
-          for (let i = facetMaps[facet].length - 1; i >= 0; i--) {
-            if (facetMaps[facet][i][1].toLowerCase().includes('show all')) {
-              //seperate the showAll item and the rest
-              showAll = facetMaps[facet].splice(i, 1)[0]
-              break
-            }
-          }
-          if (showAll) {
-            if (this.previousShowAllChecked[facet]) {
-              //Unset the show all if it was present previously
-              //and there are other items
-              if (facetMaps[facet].length > 0)
-                modifiedEvent.push(...facetMaps[facet])
-              else modifiedEvent.push(showAll)
-            } else {
-              //showAll is turned on
-              modifiedEvent.push(showAll)
-            }
-          } else {
-            modifiedEvent.push(...facetMaps[facet])
-          }
-        }
-        //Make sure the expanded item are sorted first.
-        return modifiedEvent.sort((a, b) => {
-          if (this.__expandItem__) {
-            if (a[0] == this.__expandItem__) {
-              if (b[0] == this.__expandItem__) {
-                return 0
-              } else {
-                return -1
-              }
-            } else if (b[0] == this.__expandItem__) {
-              if (a[0] == this.__expandItem__) {
-                return 0
-              } else {
-                return 1
-              }
-            } else {
-              return 0
-            }
-          } else return 0
-        })
-      }
-      return event
-    },
-    cascadeExpandChange: function (event) {
-      //work around as the expand item may change on modifying the cascade props
-      this.__expandItem__ = event
-      this.cssMods()
-    },
-    numberShownChanged: function (event) {
-      this.$emit('numberPerPage', parseInt(event))
-    },
-    updatePreviousShowAllChecked: function (options) {
-      //Reset the states
-      for (const facet in this.previousShowAllChecked) {
-        this.previousShowAllChecked[facet] = false
-      }
-      options.forEach((element) => {
-        if (element[1].toLowerCase().includes('show all'))
-          this.previousShowAllChecked[element[0]] = true
-      })
-    },
-    // setCascader: Clears previous selections and takes in an array of facets to select: filterFacets
-    // facets are in the form:
-    //    {
-    //      facetPropPath: 'anatomy.organ.name',
-    //      term: 'Sex',
-    //      facet: 'Male'
-    //      AND: true  // Optional value for setting the boolean within a facet
-    //    }
-    setCascader: function (filterFacets) {
-      //Do not set the value unless it is ready
-      if (this.cascaderIsReady && filterFacets && filterFacets.length != 0) {
-        //An inner function only used by this function
-        const createFilter = (e) => {
-          let filters = [
-            e.facetPropPath,
-            this.createCascaderItemValue(capitalise(e.term), e.facet),
-          ]
-          // Add the third level of the cascader if it exists
-          if (e.facet2) {
-            filters.push(
-              this.createCascaderItemValue(
-                capitalise(e.term),
-                e.facet,
-                e.facet2
-              )
-            )
-          }
-          return filters;
-        }
-
-        this.cascadeSelected = filterFacets.map((e) => {
-          let filters = createFilter(e)
-          return filters
-        })
-        
-        // Unforttunately the cascader is very particular about it's v-model
-        //   to get around this we create a clone of it and use this clone for adding our boolean information
-        this.cascadeSelectedWithBoolean = filterFacets.map((e) => {
-          let filters = createFilter(e)
-          filters.push(e.AND)
-          return filters
-        })
-        this.updatePreviousShowAllChecked(this.cascadeSelected)
-      }
-      this.tagsChangedCallback(filterFacets);
-    },
-    addFilter: function (filterToAdd) {
-      //Do not set the value unless it is ready
-      if (this.cascaderIsReady && filterToAdd) {
-        let filter = this.validateAndConvertFilterToHierarchical(filterToAdd)
-        if (filter) {
-          this.cascadeSelected.filter((f) => f.term != filter.term)
-          this.cascadeSelected.push([
-            filter.facetPropPath,
-            this.createCascaderItemValue(filter.term, filter.facet),
-            this.createCascaderItemValue(
-              filter.term,
-              filter.facet,
-              filter.facet2
-            ),
-          ])
-          this.cascadeSelectedWithBoolean.push([
-            filter.facetPropPath,
-            this.createCascaderItemValue(filter.term, filter.facet),
-            this.createCascaderItemValue(
-              filter.term,
-              filter.facet,
-              filter.facet2
-            ),
-            filter.AND,
-          ])
-          // The 'AND' her is to set the boolean value when we search on the filters. It can be undefined without breaking anything
-          return true
-        }
-      }
-    },
-    initiateSearch: function () {
-      this.cascadeEvent(this.cascadeSelectedWithBoolean)
-    },
-    // checkShowAllBoxes: Checks each 'Show all' cascade option by using the setCascader function
-    checkShowAllBoxes: function () {
-      this.setCascader(
-        this.options.map((option) => {
-          return {
-            facetPropPath: option.value,
-            term: option.label,
-            facet: 'Show all',
-          }
-        })
-      )
-    },
-    makeCascadeLabelsClickable: function () {
-      // Next tick allows the cascader menu to change
-      this.$nextTick(() => {
-        document
-          .querySelectorAll('.sidebar-cascader-popper .el-cascader-node__label')
-          .forEach((el) => {
-            // step through each cascade label
-            el.onclick = function () {
-              const checkbox = this.previousElementSibling
-              if (checkbox) {
-                if (!checkbox.parentElement.attributes['aria-owns']) {
-                  // check if we are at the lowest level of cascader
-                  this.previousElementSibling.click() // Click the checkbox
-                }
-              }
-            }
-          })
-      })
-    },
-
-    cssMods: function () {
-      this.makeCascadeLabelsClickable()
-      this.removeTopLevelCascaderCheckboxes()
-    },
-
-    removeTopLevelCascaderCheckboxes: function () {
-      // Next tick allows the cascader menu to change
-      this.$nextTick(() => {
-        let cascadePanels = document.querySelectorAll(
-          '.sidebar-cascader-popper .el-cascader-menu__list'
-        )
-        // Hide the checkboxes on the first level of the cascader
-        cascadePanels[0]
-          .querySelectorAll('.el-checkbox__input')
-          .forEach((el) => (el.style.display = 'none'))
-      })
-    },
-    /*
-     * Given a filter, the function below returns the filter in the format of the cascader, returns false if facet is not found
-     */
-    validateAndConvertFilterToHierarchical: function (filter) {
-      if (filter && filter.facet && filter.term) {
-        if (filter.facet2) {
-          return filter // if it has a second term we will assume it is hierarchical and return it as is
-        } else {
-          for (const firstLayer of this.options) {
-            if (firstLayer.value === filter.facetPropPath) {
-              for (const secondLayer of firstLayer.children) {
-                if (secondLayer.label === filter.facet) {
-                  // if we find a match on the second level, the filter will already be correct
-                  return filter
-                } else {
-                  if (secondLayer.children && secondLayer.children.length > 0) {
-                    for (const thirdLayer of secondLayer.children) {
-                      if (thirdLayer.label === filter.facet) {
-                        // If we find a match on the third level, we need to switch facet1 to facet2
-                        //   and populate facet1 with its parents label.
-                        filter.facet2 = thirdLayer.label
-                        filter.facet = secondLayer.label
-                        return filter
-                      }
-                    }
-                  }
-                }
-              }
-            }
-          }
-        }
-      }
-      return false
-    },
-    getHierarchicalValidatedFilters: function (filters) {
-      if (filters) {
-        if (this.cascaderIsReady) {
-          const result = []
-          filters.forEach((filter) => {
-            const validatedFilter =
-              this.validateAndConvertFilterToHierarchical(filter)
-            if (validatedFilter) {
-              result.push(validatedFilter)
-            }
-          })
-          return result
-        } else return filters
-      }
-      return []
-    },
-  },
-  mounted: function () {
-    this.algoliaClient = new AlgoliaClient(
-      this.envVars.ALGOLIA_ID,
-      this.envVars.ALGOLIA_KEY,
-      this.envVars.PENNSIEVE_API_LOCATION
-    )
-    this.algoliaClient.initIndex(this.envVars.ALGOLIA_INDEX)
-    this.populateCascader().then(() => {
-      this.cascaderIsReady = true
-      this.checkShowAllBoxes()
-      this.setCascader(this.entry.filterFacets)
-      this.cssMods()
-      this.$emit('cascaderReady')
-    })
-  },
-}
-</script>
-
-<style lang="scss" scoped>
-
-.filters {
-  position: relative;
-}
-
-.cascader-tag {
-  position: absolute;
-  top: 8px;
-  left: 8px;
-  z-index: 1;
-  display: flex;
-  gap: 4px;
-}
-
-.el-tags-container {
-  display: flex;
-  flex-wrap: wrap;
-  gap: 4px;
-}
-
-.el-tag {
-  .cascader-tag &,
-  .el-tags-container & {
-    font-family: 'Asap', sans-serif;
-    font-size: 12px;
-    color: #303133 !important;
-    background-color: #fff;
-    border-color: #dcdfe6 !important;
-  }
-}
-
-:deep(.el-cascader__tags) {
-  display: none;
-}
-
-.filter-default-value {
-  pointer-events: none;
-  position: absolute;
-  top: 0;
-  left: 0;
-  padding-top: 10px;
-  padding-left: 16px;
-}
-
-.help {
-  width: 24px !important;
-  height: 24px;
-  transform: scale(1.1);
-  cursor: pointer;
-}
-
-.popover {
-  color: rgb(48, 49, 51);
-  font-family: Asap;
-  margin: 12px;
-}
-
-.filter-icon-inside {
-  width: 12px !important;
-  height: 12px !important;
-  color: #292b66;
-  transform: scale(2) !important;
-  margin-bottom: 0px !important;
-}
-
-.cascader {
-  font-family: Asap;
-  font-size: 14px;
-  font-weight: 500;
-  font-stretch: normal;
-  font-style: normal;
-  line-height: normal;
-  letter-spacing: normal;
-  color: #292b66;
-  text-align: center;
-  padding-bottom: 6px;
-}
-
-.dataset-shown {
-  display: flex;
-  flex-direction: row;
-  float: right;
-  padding-bottom: 6px;
-  gap: 8px;
-}
-
-.dataset-results-feedback {
-  white-space:nowrap;
-  text-align: right;
-  color: rgb(48, 49, 51);
-  font-family: Asap;
-  font-size: 18px;
-  font-weight: 500;
-  padding-top: 8px;
-}
-
-.search-filters {
-  position: relative;
-  float: left;
-  padding-right: 15px;
-}
-
-.number-shown-select :deep(.el-select__wrapper) {
-  width: 68px;
-  height: 40px;
-  color: rgb(48, 49, 51);
-}
-
-.el-select-dropdown__item.is-selected {
-  color: #8300BF;
-}
-
-.filters :deep(.el-popover) {
-  background: #f3ecf6 !important;
-  border: 1px solid $app-primary-color;
-  border-radius: 4px;
-  color: #303133 !important;
-  font-size: 12px;
-  line-height: 18px;
-}
-
-.filters :deep(.el-popover[x-placement^='top'] .popper__arrow) {
-  border-top-color: $app-primary-color;
-  border-bottom-width: 0;
-}
-.filters :deep(.el-popover[x-placement^='top'] .popper__arrow::after) {
-  border-top-color: #f3ecf6;
-  border-bottom-width: 0;
-}
-
-.filters :deep(.el-popover[x-placement^='bottom'] .popper__arrow) {
-  border-top-width: 0;
-  border-bottom-color: $app-primary-color;
-}
-.filters :deep(.el-popover[x-placement^='bottom'] .popper__arrow::after) {
-  border-top-width: 0;
-  border-bottom-color: #f3ecf6;
-}
-
-.filters :deep(.el-popover[x-placement^='right'] .popper__arrow) {
-  border-right-color: $app-primary-color;
-  border-left-width: 0;
-}
-.filters :deep(.el-popover[x-placement^='right'] .popper__arrow::after) {
-  border-right-color: #f3ecf6;
-  border-left-width: 0;
-}
-
-.filters :deep(.el-popover[x-placement^='left'] .popper__arrow) {
-  border-right-width: 0;
-  border-left-color: $app-primary-color;
-}
-.filters :deep(.el-popover[x-placement^='left'] .popper__arrow::after) {
-  border-right-width: 0;
-  border-left-color: #f3ecf6;
-}
-</style>
-
-<style lang="scss">
-.sidebar-cascader-popper {
-  font-family: Asap;
-  font-size: 14px;
-  font-weight: 500;
-  font-stretch: normal;
-  font-style: normal;
-  line-height: normal;
-  letter-spacing: normal;
-  color: #292b66;
-  text-align: center;
-  padding-bottom: 6px;
-}
-
-.sidebar-cascader-popper .el-cascader-node.is-active {
-  color: $app-primary-color;
-}
-
-.sidebar-cascader-popper .el-cascader-node.in-active-path {
-  color: $app-primary-color;
-}
-
-.sidebar-cascader-popper .el-checkbox__input.is-checked > .el-checkbox__inner {
-  background-color: $app-primary-color;
-  border-color: $app-primary-color;
-}
-
-.sidebar-cascader-popper
-  .el-cascader-menu:nth-child(2)
-  .el-cascader-node:first-child {
-  border-bottom: 1px solid #e4e7ed;
-}
-
-.sidebar-cascader-popper .el-cascader-node__label {
-  text-align: left;
-}
-
-.sidebar-cascader-popper .el-cascder-panel {
-  max-height: 500px;
-}
-
-.sidebar-cascader-popper .el-scrollbar__wrap {
-  overflow-x: hidden;
-  margin-bottom: 2px !important;
-}
-
-.sidebar-cascader-popper .el-checkbox__input.is-checked .el-checkbox__inner,
-.el-checkbox__input.is-indeterminate .el-checkbox__inner {
-  background-color: $app-primary-color;
-  border-color: $app-primary-color;
-}
-</style>
+<template>
+  <div class="filters">
+    <MapSvgSpriteColor />
+    <div class="cascader-tag" v-if="presentTags.length > 0">
+      <el-tag
+        class="ml-2"
+        type="info"
+        closable
+        @close="cascadeTagClose(presentTags[0])"
+      >
+        {{ presentTags[0] }}
+      </el-tag>
+      <el-popover
+        v-if="presentTags.length > 1"
+        placement="bottom-start"
+        :width="200"
+        trigger="hover"
+      >
+        <template #default>
+          <div class="el-tags-container">
+            <el-tag
+              v-for="(tag, i) in presentTags.slice(1)"
+              :key="i"
+              class="ml-2"
+              type="info"
+              closable
+              @close="cascadeTagClose(tag)"
+            >
+              {{ tag }}
+            </el-tag>
+          </div>
+        </template>
+        <template #reference>
+          <div class="el-tags-container">
+            <el-tag
+              v-if="presentTags.length > 1"
+              class="ml-2"
+              type="info"
+            >
+              +{{ presentTags.length - 1 }}
+            </el-tag>
+          </div>
+        </template>
+      </el-popover>
+    </div>
+    <transition name="el-zoom-in-top">
+      <span v-show="showFilters" v-loading="!cascaderIsReady" class="search-filters transition-box">
+        <el-cascader
+          class="cascader"
+          ref="cascader"
+          v-model="cascadeSelected"
+          size="large"
+          placeholder=" "
+          :collapse-tags="true"
+          collapse-tags-tooltip
+          :options="options"
+          :props="props"
+          @change="cascadeEvent($event)"
+          @expand-change="cascadeExpandChange"
+          :show-all-levels="true"
+          popper-class="sidebar-cascader-popper"
+        />
+        <div v-if="showFiltersText" class="filter-default-value">Filters</div>
+        <el-popover
+          title="How do filters work?"
+          width="250"
+          trigger="hover"
+          :append-to-body="false"
+          popper-class="popover"
+        >
+          <template #reference>
+            <MapSvgIcon icon="help" class="help" />
+          </template>
+          <div>
+            <strong>Within categories:</strong> OR
+            <br />
+            example: 'heart' OR 'colon'
+            <br />
+            <br />
+            <strong>Between categories:</strong> AND
+            <br />
+            example: 'rat' AND 'lung'
+          </div>
+        </el-popover>
+      </span>
+    </transition>
+    <div class="dataset-shown">
+      <span class="dataset-results-feedback">{{ numberOfResultsText }}</span>
+      <el-select
+        class="number-shown-select"
+        v-model="numberShown"
+        placeholder="10"
+        @change="numberShownChanged($event)"
+      >
+        <el-option
+          v-for="item in numberDatasetsShown"
+          :key="item"
+          :label="item"
+          :value="item"
+        ></el-option>
+      </el-select>
+    </div>
+  </div>
+</template>
+
+<script>
+/* eslint-disable no-alert, no-console */
+import { markRaw } from 'vue'
+import {
+  ElOption as Option,
+  ElSelect as Select,
+  ElPopover as Popover,
+  ElCascader as Cascader,
+} from 'element-plus'
+import speciesMap from './species-map.js'
+import { MapSvgIcon, MapSvgSpriteColor } from "@abi-software/svg-sprite";
+import '@abi-software/svg-sprite/dist/style.css'
+
+import { AlgoliaClient } from '../algolia/algolia.js'
+import { facetPropPathMapping } from '../algolia/utils.js'
+import EventBus from './EventBus.js'
+
+const capitalise = function (txt) {
+  return txt.charAt(0).toUpperCase() + txt.slice(1)
+}
+
+const convertReadableLabel = function (original) {
+  const name = original.toLowerCase()
+  if (speciesMap[name]) {
+    return capitalise(speciesMap[name])
+  } else {
+    return capitalise(name)
+  }
+}
+
+export default {
+  name: 'SearchFilters',
+  components: {
+    MapSvgIcon,
+    MapSvgSpriteColor,
+    Option,
+    Select,
+    Popover,
+    Cascader
+  },
+  props: {
+    /**
+     * Object containing information for
+     * the required viewing.
+     */
+    entry: Object,
+    envVars: {
+      type: Object,
+      default: () => {},
+    },
+  },
+  data: function () {
+    return {
+      cascaderIsReady: false,
+      previousShowAllChecked: {
+        species: false,
+        gender: false,
+        organ: false,
+        datasets: false,
+      },
+      showFilters: true,
+      showFiltersText: true,
+      cascadeSelected: [],
+      cascadeSelectedWithBoolean: [],
+      numberShown: 10,
+      filters: [],
+      facets: ['Species', 'Gender', 'Organ', 'Datasets'],
+      numberDatasetsShown: ['10', '20', '50'],
+      props: { multiple: true },
+      options: [
+        {
+          value: 'Species',
+          label: 'Species',
+          children: [{}],
+        },
+      ],
+      presentTags:[],
+    }
+  },
+  setup() {
+    const cascaderTags = markRaw({});
+    const correctnessCheck = markRaw({
+      term: new Set(),
+      facet: new Set(),
+      facet2: new Set()
+    });
+    return { cascaderTags, correctnessCheck }
+  },
+  computed: {
+    numberOfResultsText: function () {
+      return `${this.entry.numberOfHits} results | Showing`
+    },
+  },
+  methods: {
+    createCascaderItemValue: function (
+      term,
+      facet1 = undefined,
+      facet2 = undefined
+    ) {
+      let value = term
+      if (facet1) value = `${term}>${facet1}`
+      if (facet1 && facet2) value = `${term}>${facet1}>${facet2}`
+      if (!facet1 && facet2)
+        console.warn(
+          `Warning: ${facet2} provided without its parent, this will not be shown in the cascader`
+        )
+      return value
+    },
+    populateCascader: function () {
+      return new Promise((resolve) => {
+        // Algolia facet serach
+        this.algoliaClient
+          .getAlgoliaFacets(facetPropPathMapping)
+          .then((data) => {
+            this.facets = data
+            EventBus.emit('available-facets', data)
+            this.options = data
+
+            // create top level of options in cascader
+            this.options.forEach((facet, i) => {
+              this.options[i].total = this.countTotalFacet(facet)
+
+              this.options[i].label = convertReadableLabel(facet.label)
+              this.options[i].value = this.createCascaderItemValue(
+                facet.key,
+                undefined
+              )
+
+              // put "Show all" as first option
+              this.options[i].children.unshift({
+                value: this.createCascaderItemValue('Show all'),
+                label: 'Show all',
+              })
+
+              // populate second level of options
+              this.options[i].children.forEach((facetItem, j) => {
+                this.options[i].children[j].label = convertReadableLabel(
+                  facetItem.label
+                )
+                this.options[i].children[j].value =
+                  this.createCascaderItemValue(facet.label, facetItem.label)
+                if (
+                  this.options[i].children[j].children &&
+                  this.options[i].children[j].children.length > 0
+                ) {
+                  this.options[i].children[j].children.forEach((term, k) => {
+                    this.options[i].children[j].children[k].label =
+                      convertReadableLabel(term.label)
+                    this.options[i].children[j].children[k].value =
+                      this.createCascaderItemValue(
+                        facet.label,
+                        facetItem.label,
+                        term.label
+                      )
+                  })
+                }
+              })
+            })
+
+            this.populatePMRinCascader();
+          })
+          .finally(() => {
+            resolve()
+          })
+      })
+    },
+    /**
+     * Add PMR checkbox in filters (cascader)
+     */
+    populatePMRinCascader: function () {
+      for (let i = 0; i < this.options.length; i += 1) {
+        const option = this.options[i];
+        // match with "Data type"'s' key
+        if (option.key === 'item.types.name') {
+          option.children.push({
+            label: 'PMR',
+            value: this.createCascaderItemValue("Data type", "PMR"),
+          });
+        }
+      }
+    },
+    /**
+     * Create manual events when cascader tag is closed
+     */
+    cascadeTagClose: function (tag) {
+      let manualEvent = []
+
+      Object.entries(this.cascaderTags).map((entry) => {
+        const term = entry[0], facet = entry[1] // Either "Array" or "Object", depends on the cascader item level
+        const option = this.options.filter((option) => option.label == term)[0]
+        const key = option.key
+
+        for (let index = 0; index < option.children.length; index++) {
+          const child = option.children[index]
+          const label = child.label, value = child.value
+
+          if (Array.isArray(facet)) {
+            // push "Show all" if there is no item checked
+            if (facet.length === 0 && label.toLowerCase() === "show all") {
+              manualEvent.push([key, value])
+              break
+              // push all checked items
+            } else if (label !== tag && facet.includes(label))
+              manualEvent.push([key, value])
+          } else {
+            // loop nested cascader items
+            Object.entries(facet).map((entry2) => {
+              const term2 = entry2[0], facet2 = entry2[1] // object key, object value
+
+              if (term2 === label) {
+                child.children.map((child2) => {
+                  const label2 = child2.label, value2 = child2.value
+                  // push all checked items
+                  if (label2 !== tag && facet2.includes(label2))
+                    manualEvent.push([key, value2])
+                })
+              }
+            })
+          }
+        }
+      })
+      this.cascadeEvent(manualEvent)
+    },
+    /**
+     * Re-generate 'cascaderTags' and 'presentTags'
+     * Not able to avoid wrong facet at the moment
+     */
+    tagsChangedCallback: function (event) {
+      if (this.correctnessCheck.term && this.correctnessCheck.facet && this.correctnessCheck.facet2) {
+        this.options.map((option) => {
+          this.correctnessCheck.term.add(option.label)
+          option.children.map((child) => {
+            this.correctnessCheck.facet.add(child.label)
+            if (option.label === 'Anatomical structure' && child.label !== 'Show all') {
+              child.children.map((child2) => {
+                this.correctnessCheck.facet2.add(child2.label)
+              })
+            }
+          })
+        })
+      }
+
+      this.cascaderTags = {}
+      this.presentTags = []
+      event.map((item) => {
+        const { facet, facet2, term } = item
+        if (this.correctnessCheck.term.has(term) && this.correctnessCheck.facet.has(facet)) {
+          if (facet2) {
+            if (this.correctnessCheck.facet2.has(facet2)) {
+              if (term in this.cascaderTags) {
+                if (facet in this.cascaderTags[term]) this.cascaderTags[term][facet].push(facet2)
+                else this.cascaderTags[term][facet] = [facet2]
+              } else {
+                this.cascaderTags[term] = {}
+                this.cascaderTags[term][facet] = [facet2]
+              }
+            }
+          } else {
+            // If 'cascaderTags' has key 'Anatomical structure',
+            // it's value type will be Object (because it has nested facets),
+            // in this case 'push' action will not available.
+            if (term in this.cascaderTags && term !== 'Anatomical structure')
+              this.cascaderTags[term].push(facet)
+            else {
+              if (facet.toLowerCase() !== "show all") this.cascaderTags[term] = [facet]
+              else this.cascaderTags[term] = []
+            }
+          }
+        }
+      })
+
+      Object.values(this.cascaderTags).map((value) => {
+        const extend = Array.isArray(value) ? value : Object.values(value).flat(1)
+        this.presentTags = [...this.presentTags, ...extend]
+      })
+      this.presentTags = [...new Set(this.presentTags)]
+      if (this.presentTags.length > 0) this.showFiltersText = false
+      else this.showFiltersText = true
+    },
+    /**
+     * Support for function 'showAllEventModifierForAutoCheckAll'
+     * Called in function 'populateCascader'
+     */
+    countTotalFacet: function (facet) {
+      if (['anatomy.organ.category.name'].includes(facet.key)) {
+        const count = facet.children.reduce((total, num) => {
+          // The first 'total' will be an object
+          total = typeof total == 'number' ? total : total.children.length
+          return total + num.children.length
+        })
+        return count
+      }
+      return facet.children.length
+    },
+    /**
+     * When check/uncheck all child items, automatically check "Show all"
+     */
+    showAllEventModifierForAutoCheckAll: function (event) {
+      const currentKeys = {}
+      event.map((e) => {
+        const eventKey = e[0]
+        if (eventKey in currentKeys) currentKeys[eventKey] += 1
+        else currentKeys[eventKey] = 1
+      })
+      this.options.map((option) => {
+        const key = option.key
+        const value = option.children.filter((child) => child.label === "Show all")[0].value
+        const total = option.total
+        // Remove events if all child items is checked
+        if (currentKeys[key] === total) {
+          event = event.filter((e) => e[0] !== option.key)
+          delete currentKeys[key]
+        }
+        // Add 'Show all' if facet type not exist in event
+        if (!(key in currentKeys)) event.unshift([key, value])
+      })
+      return event
+    },
+    // cascadeEvent: initiate searches based off cascader changes
+    cascadeEvent: function (eventIn) {
+      let event = [...eventIn]
+      if (event) {
+        // Check for show all in selected cascade options
+
+        event = this.showAllEventModifier(event)
+
+        event = this.showAllEventModifierForAutoCheckAll(event)
+        /**
+         * Move the new added event to the beginning
+         * Otherwise, cascader will show different expand item
+         */
+        if (this.__expandItem__) {
+          let position = 0
+          if (this.__expandItem__.length > 1) {
+            position = 1
+          }
+          const current = event.filter((e) => e[position] == this.__expandItem__[position]);
+          const rest = event.filter((e) => e[position] !== this.__expandItem__[position]);
+          event = [...current, ...rest]
+        }
+        // Create results for the filter update
+        let filterKeys = event
+          .filter((selection) => selection !== undefined)
+          .map((fs) => {
+            let { hString, bString } =
+              this.findHierarachyStringAndBooleanString(fs)
+            let { facet, facet2, term } =
+              this.getFacetsFromHierarchyString(hString)
+            return {
+              facetPropPath: fs[0],
+              facet: facet,
+              facet2: facet2,
+              term: term,
+              AND: bString, // for setting the boolean
+            }
+          })
+
+        // Move results from arrays to object for use on scicrunch (note that we remove 'duplicate' as that is only needed for filter keys)
+        let filters = event
+          .filter((selection) => selection !== undefined)
+          .map((fs) => {
+            let facetSubPropPath = undefined
+            let propPath = fs[0].includes('duplicate')
+              ? fs[0].split('duplicate')[0]
+              : fs[0]
+            let { hString, bString } =
+              this.findHierarachyStringAndBooleanString(fs)
+            let { facet, facet2, term } =
+              this.getFacetsFromHierarchyString(hString)
+            if (facet2) {
+              // We need to change the propPath if we are at the third level of the cascader
+              facet = facet2
+              facetSubPropPath = 'anatomy.organ.name'
+            }
+            return {
+              facetPropPath: propPath,
+              facet: facet,
+              term: term,
+              AND: bString, // for setting the boolean
+              facetSubPropPath: facetSubPropPath, // will be used for filters if we are at the third level of the cascader
+            }
+          })
+
+        this.$emit('loading', true) // let sidebarcontent wait for the requests
+        this.$emit('filterResults', filters) // emit filters for apps above sidebar
+        this.setCascader(filterKeys) //update our cascader v-model if we modified the event
+        this.cssMods() // update css for the cascader
+      }
+    },
+    //this fucntion is needed as we previously stored booleans in the array of event that
+    //  are stored in the cascader
+    findHierarachyStringAndBooleanString(cascadeEventItem) {
+      let hString, bString
+      if (cascadeEventItem.length >= 3) {
+        if (cascadeEventItem[2] &&
+          (typeof cascadeEventItem[2] === 'string' ||
+          cascadeEventItem[2] instanceof String) &&
+          cascadeEventItem[2].split('>').length > 2) {
+          hString = cascadeEventItem[2]
+          bString = cascadeEventItem.length == 4 ? cascadeEventItem[3] : undefined
+        } else {
+          hString = cascadeEventItem[1]
+          bString = cascadeEventItem[2]
+        }
+      } else {
+        hString = cascadeEventItem[1]
+        bString = undefined
+      }
+      return { hString, bString }
+    },
+    // Splits the terms and facets from the string stored in the cascader
+    getFacetsFromHierarchyString(hierarchyString) {
+      let facet,
+        term,
+        facet2 = undefined
+      let fsSplit = hierarchyString.split('>')
+      if (fsSplit.length == 3) {
+        // if we are at the third level of the cascader
+        facet2 = fsSplit[2]
+        facet = fsSplit[1]
+        term = fsSplit[0]
+      } else {
+        facet = fsSplit[1]
+        term = fsSplit[0]
+      }
+      return { facet, facet2, term }
+    },
+    // showAllEventModifier:  Modifies a cascade event to unclick all selections in category if "show all" is clicked. Also unchecks "Show all" if any secection is clicked
+    // *NOTE* Does NOT remove 'Show all' selections from showing in 'cascadeSelected'
+    showAllEventModifier: function (event) {
+      // check if show all is in the cascader checked option list
+      let hasShowAll = event
+        .map((ev) => (ev ? ev[1].toLowerCase().includes('show all') : false))
+        .includes(true)
+      // remove all selected options below the show all if checked
+      if (hasShowAll) {
+        let modifiedEvent = []
+        let facetMaps = {}
+        //catagorised different facet items
+        for (const i in event) {
+          if (facetMaps[event[i][0]] === undefined) facetMaps[event[i][0]] = []
+          facetMaps[event[i][0]].push(event[i])
+        }
+        // go through each facets
+        for (const facet in facetMaps) {
+          let showAll = undefined
+          // Find the show all item if any
+          for (let i = facetMaps[facet].length - 1; i >= 0; i--) {
+            if (facetMaps[facet][i][1].toLowerCase().includes('show all')) {
+              //seperate the showAll item and the rest
+              showAll = facetMaps[facet].splice(i, 1)[0]
+              break
+            }
+          }
+          if (showAll) {
+            if (this.previousShowAllChecked[facet]) {
+              //Unset the show all if it was present previously
+              //and there are other items
+              if (facetMaps[facet].length > 0)
+                modifiedEvent.push(...facetMaps[facet])
+              else modifiedEvent.push(showAll)
+            } else {
+              //showAll is turned on
+              modifiedEvent.push(showAll)
+            }
+          } else {
+            modifiedEvent.push(...facetMaps[facet])
+          }
+        }
+        //Make sure the expanded item are sorted first.
+        return modifiedEvent.sort((a, b) => {
+          if (this.__expandItem__) {
+            if (a[0] == this.__expandItem__) {
+              if (b[0] == this.__expandItem__) {
+                return 0
+              } else {
+                return -1
+              }
+            } else if (b[0] == this.__expandItem__) {
+              if (a[0] == this.__expandItem__) {
+                return 0
+              } else {
+                return 1
+              }
+            } else {
+              return 0
+            }
+          } else return 0
+        })
+      }
+      return event
+    },
+    cascadeExpandChange: function (event) {
+      //work around as the expand item may change on modifying the cascade props
+      this.__expandItem__ = event
+      this.cssMods()
+    },
+    numberShownChanged: function (event) {
+      this.$emit('numberPerPage', parseInt(event))
+    },
+    updatePreviousShowAllChecked: function (options) {
+      //Reset the states
+      for (const facet in this.previousShowAllChecked) {
+        this.previousShowAllChecked[facet] = false
+      }
+      options.forEach((element) => {
+        if (element[1].toLowerCase().includes('show all'))
+          this.previousShowAllChecked[element[0]] = true
+      })
+    },
+    // setCascader: Clears previous selections and takes in an array of facets to select: filterFacets
+    // facets are in the form:
+    //    {
+    //      facetPropPath: 'anatomy.organ.name',
+    //      term: 'Sex',
+    //      facet: 'Male'
+    //      AND: true  // Optional value for setting the boolean within a facet
+    //    }
+    setCascader: function (filterFacets) {
+      //Do not set the value unless it is ready
+      if (this.cascaderIsReady && filterFacets && filterFacets.length != 0) {
+        //An inner function only used by this function
+        const createFilter = (e) => {
+          let filters = [
+            e.facetPropPath,
+            this.createCascaderItemValue(capitalise(e.term), e.facet),
+          ]
+          // Add the third level of the cascader if it exists
+          if (e.facet2) {
+            filters.push(
+              this.createCascaderItemValue(
+                capitalise(e.term),
+                e.facet,
+                e.facet2
+              )
+            )
+          }
+          return filters;
+        }
+
+        this.cascadeSelected = filterFacets.map((e) => {
+          let filters = createFilter(e)
+          return filters
+        })
+
+        // Unforttunately the cascader is very particular about it's v-model
+        //   to get around this we create a clone of it and use this clone for adding our boolean information
+        this.cascadeSelectedWithBoolean = filterFacets.map((e) => {
+          let filters = createFilter(e)
+          filters.push(e.AND)
+          return filters
+        })
+        this.updatePreviousShowAllChecked(this.cascadeSelected)
+      }
+      this.tagsChangedCallback(filterFacets);
+    },
+    addFilter: function (filterToAdd) {
+      //Do not set the value unless it is ready
+      if (this.cascaderIsReady && filterToAdd) {
+        let filter = this.validateAndConvertFilterToHierarchical(filterToAdd)
+        if (filter) {
+          this.cascadeSelected.filter((f) => f.term != filter.term)
+          this.cascadeSelected.push([
+            filter.facetPropPath,
+            this.createCascaderItemValue(filter.term, filter.facet),
+            this.createCascaderItemValue(
+              filter.term,
+              filter.facet,
+              filter.facet2
+            ),
+          ])
+          this.cascadeSelectedWithBoolean.push([
+            filter.facetPropPath,
+            this.createCascaderItemValue(filter.term, filter.facet),
+            this.createCascaderItemValue(
+              filter.term,
+              filter.facet,
+              filter.facet2
+            ),
+            filter.AND,
+          ])
+          // The 'AND' her is to set the boolean value when we search on the filters. It can be undefined without breaking anything
+          return true
+        }
+      }
+    },
+    initiateSearch: function () {
+      this.cascadeEvent(this.cascadeSelectedWithBoolean)
+    },
+    // checkShowAllBoxes: Checks each 'Show all' cascade option by using the setCascader function
+    checkShowAllBoxes: function () {
+      this.setCascader(
+        this.options.map((option) => {
+          return {
+            facetPropPath: option.value,
+            term: option.label,
+            facet: 'Show all',
+          }
+        })
+      )
+    },
+    makeCascadeLabelsClickable: function () {
+      // Next tick allows the cascader menu to change
+      this.$nextTick(() => {
+        document
+          .querySelectorAll('.sidebar-cascader-popper .el-cascader-node__label')
+          .forEach((el) => {
+            // step through each cascade label
+            el.onclick = function () {
+              const checkbox = this.previousElementSibling
+              if (checkbox) {
+                if (!checkbox.parentElement.attributes['aria-owns']) {
+                  // check if we are at the lowest level of cascader
+                  this.previousElementSibling.click() // Click the checkbox
+                }
+              }
+            }
+          })
+      })
+    },
+
+    cssMods: function () {
+      this.makeCascadeLabelsClickable()
+      this.removeTopLevelCascaderCheckboxes()
+    },
+
+    removeTopLevelCascaderCheckboxes: function () {
+      // Next tick allows the cascader menu to change
+      this.$nextTick(() => {
+        let cascadePanels = document.querySelectorAll(
+          '.sidebar-cascader-popper .el-cascader-menu__list'
+        )
+        // Hide the checkboxes on the first level of the cascader
+        cascadePanels[0]
+          .querySelectorAll('.el-checkbox__input')
+          .forEach((el) => (el.style.display = 'none'))
+      })
+    },
+    /*
+     * Given a filter, the function below returns the filter in the format of the cascader, returns false if facet is not found
+     */
+    validateAndConvertFilterToHierarchical: function (filter) {
+      if (filter && filter.facet && filter.term) {
+        if (filter.facet2) {
+          return filter // if it has a second term we will assume it is hierarchical and return it as is
+        } else {
+          for (const firstLayer of this.options) {
+            if (firstLayer.value === filter.facetPropPath) {
+              for (const secondLayer of firstLayer.children) {
+                if (secondLayer.label === filter.facet) {
+                  // if we find a match on the second level, the filter will already be correct
+                  return filter
+                } else {
+                  if (secondLayer.children && secondLayer.children.length > 0) {
+                    for (const thirdLayer of secondLayer.children) {
+                      if (thirdLayer.label === filter.facet) {
+                        // If we find a match on the third level, we need to switch facet1 to facet2
+                        //   and populate facet1 with its parents label.
+                        filter.facet2 = thirdLayer.label
+                        filter.facet = secondLayer.label
+                        return filter
+                      }
+                    }
+                  }
+                }
+              }
+            }
+          }
+        }
+      }
+      return false
+    },
+    getHierarchicalValidatedFilters: function (filters) {
+      if (filters) {
+        if (this.cascaderIsReady) {
+          const result = []
+          filters.forEach((filter) => {
+            const validatedFilter =
+              this.validateAndConvertFilterToHierarchical(filter)
+            if (validatedFilter) {
+              result.push(validatedFilter)
+            }
+          })
+          return result
+        } else return filters
+      }
+      return []
+    },
+  },
+  mounted: function () {
+    this.algoliaClient = new AlgoliaClient(
+      this.envVars.ALGOLIA_ID,
+      this.envVars.ALGOLIA_KEY,
+      this.envVars.PENNSIEVE_API_LOCATION
+    )
+    this.algoliaClient.initIndex(this.envVars.ALGOLIA_INDEX)
+    this.populateCascader().then(() => {
+      this.cascaderIsReady = true
+      this.checkShowAllBoxes()
+      this.setCascader(this.entry.filterFacets)
+      this.cssMods()
+      this.$emit('cascaderReady')
+    })
+  },
+}
+</script>
+
+<style lang="scss" scoped>
+
+.filters {
+  position: relative;
+}
+
+.cascader-tag {
+  position: absolute;
+  top: 8px;
+  left: 8px;
+  z-index: 1;
+  display: flex;
+  gap: 4px;
+}
+
+.el-tags-container {
+  display: flex;
+  flex-wrap: wrap;
+  gap: 4px;
+}
+
+.el-tag {
+  .cascader-tag &,
+  .el-tags-container & {
+    font-family: 'Asap', sans-serif;
+    font-size: 12px;
+    color: #303133 !important;
+    background-color: #fff;
+    border-color: #dcdfe6 !important;
+  }
+}
+
+:deep(.el-cascader__tags) {
+  display: none;
+}
+
+.filter-default-value {
+  pointer-events: none;
+  position: absolute;
+  top: 0;
+  left: 0;
+  padding-top: 10px;
+  padding-left: 16px;
+}
+
+.help {
+  width: 24px !important;
+  height: 24px;
+  transform: scale(1.1);
+  cursor: pointer;
+}
+
+.popover {
+  color: rgb(48, 49, 51);
+  font-family: Asap;
+  margin: 12px;
+}
+
+.filter-icon-inside {
+  width: 12px !important;
+  height: 12px !important;
+  color: #292b66;
+  transform: scale(2) !important;
+  margin-bottom: 0px !important;
+}
+
+.cascader {
+  font-family: Asap;
+  font-size: 14px;
+  font-weight: 500;
+  font-stretch: normal;
+  font-style: normal;
+  line-height: normal;
+  letter-spacing: normal;
+  color: #292b66;
+  text-align: center;
+  padding-bottom: 6px;
+}
+
+.dataset-shown {
+  display: flex;
+  flex-direction: row;
+  float: right;
+  padding-bottom: 6px;
+  gap: 8px;
+}
+
+.dataset-results-feedback {
+  white-space:nowrap;
+  text-align: right;
+  color: rgb(48, 49, 51);
+  font-family: Asap;
+  font-size: 18px;
+  font-weight: 500;
+  padding-top: 8px;
+}
+
+.search-filters {
+  position: relative;
+  float: left;
+  padding-right: 15px;
+}
+
+.number-shown-select :deep(.el-select__wrapper) {
+  width: 68px;
+  height: 40px;
+  color: rgb(48, 49, 51);
+}
+
+.el-select-dropdown__item.is-selected {
+  color: #8300BF;
+}
+
+.filters :deep(.el-popover) {
+  background: #f3ecf6 !important;
+  border: 1px solid $app-primary-color;
+  border-radius: 4px;
+  color: #303133 !important;
+  font-size: 12px;
+  line-height: 18px;
+}
+
+.filters :deep(.el-popover[x-placement^='top'] .popper__arrow) {
+  border-top-color: $app-primary-color;
+  border-bottom-width: 0;
+}
+.filters :deep(.el-popover[x-placement^='top'] .popper__arrow::after) {
+  border-top-color: #f3ecf6;
+  border-bottom-width: 0;
+}
+
+.filters :deep(.el-popover[x-placement^='bottom'] .popper__arrow) {
+  border-top-width: 0;
+  border-bottom-color: $app-primary-color;
+}
+.filters :deep(.el-popover[x-placement^='bottom'] .popper__arrow::after) {
+  border-top-width: 0;
+  border-bottom-color: #f3ecf6;
+}
+
+.filters :deep(.el-popover[x-placement^='right'] .popper__arrow) {
+  border-right-color: $app-primary-color;
+  border-left-width: 0;
+}
+.filters :deep(.el-popover[x-placement^='right'] .popper__arrow::after) {
+  border-right-color: #f3ecf6;
+  border-left-width: 0;
+}
+
+.filters :deep(.el-popover[x-placement^='left'] .popper__arrow) {
+  border-right-width: 0;
+  border-left-color: $app-primary-color;
+}
+.filters :deep(.el-popover[x-placement^='left'] .popper__arrow::after) {
+  border-right-width: 0;
+  border-left-color: #f3ecf6;
+}
+</style>
+
+<style lang="scss">
+.sidebar-cascader-popper {
+  font-family: Asap;
+  font-size: 14px;
+  font-weight: 500;
+  font-stretch: normal;
+  font-style: normal;
+  line-height: normal;
+  letter-spacing: normal;
+  color: #292b66;
+  text-align: center;
+  padding-bottom: 6px;
+}
+
+.sidebar-cascader-popper .el-cascader-node.is-active {
+  color: $app-primary-color;
+}
+
+.sidebar-cascader-popper .el-cascader-node.in-active-path {
+  color: $app-primary-color;
+}
+
+.sidebar-cascader-popper .el-checkbox__input.is-checked > .el-checkbox__inner {
+  background-color: $app-primary-color;
+  border-color: $app-primary-color;
+}
+
+.sidebar-cascader-popper
+  .el-cascader-menu:nth-child(2)
+  .el-cascader-node:first-child {
+  border-bottom: 1px solid #e4e7ed;
+}
+
+.sidebar-cascader-popper .el-cascader-node__label {
+  text-align: left;
+}
+
+.sidebar-cascader-popper .el-cascder-panel {
+  max-height: 500px;
+}
+
+.sidebar-cascader-popper .el-scrollbar__wrap {
+  overflow-x: hidden;
+  margin-bottom: 2px !important;
+}
+
+.sidebar-cascader-popper .el-checkbox__input.is-checked .el-checkbox__inner,
+.el-checkbox__input.is-indeterminate .el-checkbox__inner {
+  background-color: $app-primary-color;
+  border-color: $app-primary-color;
+}
+</style>