@abi-software/map-side-bar 2.10.5 → 2.10.6

package/dist/map-side-bar.js

@@ -22083,7 +22083,7 @@ class Zy {
     this.client = M6(
       t,
       n
-    ), this.PENNSIEVE_API_LOCATION = r, this.anatomyFacetLabels = [];
+    ), this.PENNSIEVE_API_LOCATION = r;
   }
   initIndex(t) {
     this.index = this.client.initIndex(t);
@@ -22181,15 +22181,12 @@ class Zy {
     return n;
   }
   _processAnatomy(t) {
-    let n = [], r = [], o = [], a = [];
-    return t.forEach((s) => {
-      s.item && s.item.keywords && s.item.keywords.forEach((i) => {
-        let l = i.keyword.toUpperCase();
-        (l.includes("UBERON") || l.includes("ILX")) && n.push(this._processUberonURL(l));
-      }), s.anatomy && s.anatomy.organ && s.anatomy.organ.forEach((i) => {
-        i.curie && (n.push(i.curie), r.push(i.name));
-      });
-    }), a = [...new Set(n)], o = [...new Set(r)], this.anatomyFacetLabels = o, a;
+    const n = {};
+    t.forEach((r) => {
+      r.anatomy && r.anatomy.organ && r.anatomy.organ.forEach((o) => {
+        o.curie && (n[o.curie] = o.name);
+      }), localStorage.setItem("available-name-curie-mapping", JSON.stringify(n));
+    });
   }
   _processUberonURL(t) {
     return t.split("/").pop().replace("_", ":");
@@ -22253,6 +22250,24 @@ class Zy {
       });
     });
   }
+  setLocalStorageForTermMapping() {
+    return new Promise((t) => {
+      this.index.search("", {
+        facets: ["*"],
+        hitsPerPage: 999999,
+        page: 0,
+        attributesToHighlight: [],
+        attributesToRetrieve: [
+          "objectID",
+          "item.keywords.keyword",
+          "anatomy.organ.name",
+          "anatomy.organ.curie"
+        ]
+      }).then((n) => {
+        this._processAnatomy(n.hits);
+      });
+    });
+  }
   processResultsForFlatmap(t, n) {
     const r = this.filterAvailableAnatomies(t);
     return n.map((a) => ({
@@ -22882,7 +22897,7 @@ const xa = function(e) {
       this.envVars.ALGOLIA_ID,
       this.envVars.ALGOLIA_KEY,
       this.envVars.PENNSIEVE_API_LOCATION
-    )), this.algoliaClient.initIndex(this.envVars.ALGOLIA_INDEX)), this.populateCascader().then(() => {
+    )), this.algoliaClient.initIndex(this.envVars.ALGOLIA_INDEX), this.algoliaClient.setLocalStorageForTermMapping()), this.populateCascader().then(() => {
       this.cascaderIsReady = !0, this.checkShowAllBoxes(), this.setCascader(this.entry.filterFacets), this.cssMods(), this.$emit("cascaderReady");
     });
   }
@@ -23079,7 +23094,7 @@ function n9(e, t, n, r, o, a) {
     ])
   ]);
 }
-const cl = /* @__PURE__ */ Nn(j6, [["render", n9], ["__scopeId", "data-v-7462cd92"]]);
+const cl = /* @__PURE__ */ Nn(j6, [["render", n9], ["__scopeId", "data-v-b244381e"]]);
 var r9 = async function(e) {
   if (!e.ok) {
     let t = await e.json();

package/dist/map-side-bar.umd.cjs

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     </g>
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o=t.querySelectorAll(".el-cascader-menu__list");o&&o.forEach(r=>{r.querySelector(".sidebar-cascader-search")?r.classList.add("cascader-menu-with-search"):r.classList.remove("cascader-menu-with-search")})}})},searchInputChange:function(e,t){e.preventDefault();const{target:o}=e;if(o){const r=o.value,a=t.pathValues[0];this.searchInputs[a]=r,this.updateListFilters(a)}},searchInputFocusToggle:function(e,t){const{target:o}=e;if(!o)return;const r=o.closest(".el-input__wrapper");t===!0?r.classList.add("is-focus"):r.classList.remove("is-focus")},updateListFilters:function(e){const t=this.searchInputs[e]||"";this.$nextTick(()=>{const o=this.$refs["searchInput_"+e];if(!o)return;o.closest(".el-cascader-menu__list").querySelectorAll(".el-cascader-node").forEach((a,i)=>{i>1&&(a.querySelector(".el-cascader-node__label").textContent.toLowerCase().includes(t.toLowerCase())?a.classList.remove("hide"):a.classList.add("hide"))}),t&&o.focus()})},numberShownChanged:function(e){this.$emit("numberPerPage",parseInt(e))},updatePreviousShowAllChecked:function(e){for(const t in this.previousShowAllChecked)this.previousShowAllChecked[t]=!1;e.forEach(t=>{t[1].toLowerCase().includes("show all")&&(this.previousShowAllChecked[t[0]]=!0)})},setCascader:function(e){if(this.cascaderIsReady&&e&&e.length!=0){const t=o=>{let r=[o.facetPropPath,this.createCascaderItemValue([wa(o.term),o.facet])];return o.facet2&&(r.push(this.createCascaderItemValue([wa(o.term),o.facet,o.facet2])),o.facet3&&r.push(this.createCascaderItemValue([wa(o.term),o.facet,o.facet2,o.facet3]))),r};this.cascadeSelected=e.map(o=>t(o)),this.cascadeSelectedWithBoolean=e.map(o=>{let r=t(o);return r.push(o.AND),r}),this.updatePreviousShowAllChecked(this.cascadeSelected)}this.tagsChangedCallback(e)},addFilter:function(e){if(this.cascaderIsReady&&e){let t=this.validateAndConvertFilterToHierarchical(e);if(t&&t.length)return t.forEach(o=>{this.cascadeSelected.filter(a=>a.term!=o.term);const r=[o.facetPropPath,this.createCascaderItemValue([o.term,o.facet]),this.createCascaderItemValue([o.term,o.facet,o.facet2])];o.facet3&&r.push(this.createCascaderItemValue([o.term,o.facet,o.facet2,o.facet3])),this.cascadeSelected.push([...r]),this.cascadeSelectedWithBoolean.push([...r,o.AND])}),!0}},addFilters:function(e){let t=!1;return this.cascaderIsReady&&e.forEach(o=>{t=t||this.addFilter(o)}),t},initiateSearch:function(){this.cascadeEvent(this.cascadeSelectedWithBoolean)},checkShowAllBoxes:function(){this.setCascader(this.options.map(e=>({facetPropPath:e.value,term:e.label,facet:"Show all"})))},makeCascadeLabelsClickable:function(){this.$nextTick(()=>{document.querySelectorAll(".sidebar-cascader-popper .el-cascader-node__label").forEach(e=>{e.onclick=function(){const t=this.previousElementSibling;t&&(t.parentElement.attributes["aria-owns"]||this.previousElementSibling.click())}})})},cssMods:function(){this.makeCascadeLabelsClickable()},flattenToFilters:function(e,t,o=!1){let r=[];if(t){const a=e.facet.toLowerCase();let i=!1;for(const s of t){const l=e.facetPropPath.includes("flatmap.connectivity.source.")&&s.key,c=l?s.key.replace(`${e.facetPropPath}.`,"").toLowerCase()===a:s.label.toLowerCase()===a;if(s.children&&s.children.length){const d=c||o,u=this.flattenToFilters(e,s.children,d);r.push(...u)}else if(s.facetPropPath||s.key){const[d,u,f,g]=s.value.split(">");g==="Non specific"&&(i=!0);const m={term:d,facet:u,facetPropPath:e.facetPropPath,...f&&{facet2:f},...g&&{facet3:g}};"AND"in e&&(m.AND=e.AND),(o||c)&&(l?r.push(e):r.push(m))}}o&&i&&(r=r.filter(s=>!s.facet3||s.facet3==="Non specific"))}return r},validateAndConvertFilterToHierarchical:function(e){if(e&&e.facet&&e.term){if(e.facet2||e.facet3)return[e];{const t=this.options.find(o=>o.label===e.term);if(t)return this.flattenToFilters(e,t.children)}}},getHierarchicalValidatedFilters:function(e){const t=[],o=[],r=[];if(e){if(!this.cascaderIsReady)return{result:e,notFound:r};e.forEach(a=>{const i=this.validateAndConvertFilterToHierarchical(a);i&&i.length?i.forEach(s=>{t.push(s),o.push(s.term)}):this.options.find(l=>l.key===a.facetPropPath)&&r.push(a)}),this.options.forEach(a=>{o.includes(a.label)||t.push({facet:"Show all",facetPropPath:a.key,label:"Show all",term:a.label})})}return{result:t,notFound:r}},hasLineStyles:function(e){return"colour"in e&&e.colourStyle==="line"},getLineStyles:function(e){return"colour"in e&&e.colourStyle==="line"?"dashed"in e&&e.dashed===!0?{background:`repeating-linear-gradient(90deg,${e.colour},${e.colour} 6px,transparent 0,transparent 9px)`}:{background:e.colour}:{display:"None"}},getBackgroundStyles:function(e){return"colour"in e&&e.colourStyle==="background"?{background:e.colour}:{}}},mounted:function(){this.entry.options||(this.algoliaClient=n.markRaw(new C0(this.envVars.ALGOLIA_ID,this.envVars.ALGOLIA_KEY,this.envVars.PENNSIEVE_API_LOCATION)),this.algoliaClient.initIndex(this.envVars.ALGOLIA_INDEX)),this.populateCascader().then(()=>{this.cascaderIsReady=!0,this.checkShowAllBoxes(),this.setCascader(this.entry.filterFacets),this.cssMods(),this.$emit("cascaderReady")})}},u8={class:"filters"},f8={key:0},p8={key:0,class:"cascader-tag"},h8={class:"el-tags-container"},m8={class:"el-tags-container"},g8={class:"search-filters transition-box"},y8={key:0},b8={class:"sidebar-cascader-search el-input"},w8={class:"el-input__wrapper"},C8=["value","onInput"],v8={key:1},k8={key:0,class:"sr-only"},S8={key:0,class:"filter-default-value"},E8={class:"dataset-shown"},x8={class:"dataset-results-feedback"};function _8(e,t,o,r,a,i){const s=n.resolveComponent("MapSvgSpriteColor"),l=bo,c=qr,d=Tl,u=_l,f=Op,g=n.resolveComponent("MapSvgIcon"),m=Fl,p=di,h=Yo;return n.openBlock(),n.createElementBlock("div",u8,[n.createVNode(s),i.showFilters&&e.options.length>0?(n.openBlock(),n.createElementBlock("div",f8,[e.presentTags.length>0?(n.openBlock(),n.createElementBlock("div",p8,[n.createVNode(l,{class:"ml-2",type:"info",closable:"",onClose:t[0]||(t[0]=y=>i.cascadeTagClose(e.presentTags[0]))},{default:n.withCtx(()=>[n.createElementVNode("span",{class:n.normalizeClass(["tag-text",i.modifyCascaderTagStyle(e.presentTags[0])])},n.toDisplayString(e.presentTags[0]),3)]),_:1}),e.presentTags.length>1?(n.openBlock(),n.createBlock(c,{key:0,placement:"bottom-start",width:250,trigger:"hover","popper-class":"cascade-tags-popover"},{default:n.withCtx(()=>[n.createElementVNode("div",h8,[(n.openBlock(!0),n.createElementBlock(n.Fragment,null,n.renderList(e.presentTags.slice(1),(y,b)=>(n.openBlock(),n.createBlock(l,{key:b,class:n.normalizeClass(["ml-2",i.modifyCascaderTagStyle(y)]),type:"info",closable:"",onClose:v=>i.cascadeTagClose(y)},{default:n.withCtx(()=>[n.createTextVNode(n.toDisplayString(y),1)]),_:2},1032,["class","onClose"]))),128))])]),reference:n.withCtx(()=>[n.createElementVNode("div",m8,[e.presentTags.length>1?(n.openBlock(),n.createBlock(l,{key:0,class:"ml-2",type:"info"},{default:n.withCtx(()=>[n.createTextVNode(" 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do filters work?",width:"250",trigger:"hover","popper-class":"filter-help-popover"},{reference:n.withCtx(()=>[n.createVNode(g,{icon:"help",class:"help"})]),default:n.withCtx(()=>[n.createElementVNode("div",null,[t[7]||(t[7]=n.createElementVNode("strong",null,"Within categories:",-1)),t[8]||(t[8]=n.createTextVNode(" OR ")),t[9]||(t[9]=n.createElementVNode("br",null,null,-1)),n.createTextVNode(" example: "+n.toDisplayString(o.entry.helper.within)+" ",1),t[10]||(t[10]=n.createElementVNode("br",null,null,-1)),t[11]||(t[11]=n.createElementVNode("br",null,null,-1)),t[12]||(t[12]=n.createElementVNode("strong",null,"Between categories:",-1)),t[13]||(t[13]=n.createTextVNode(" AND ")),t[14]||(t[14]=n.createElementVNode("br",null,null,-1)),n.createTextVNode(" example: "+n.toDisplayString(o.entry.helper.between),1)])]),_:1})])),[[h,!e.cascaderIsReady]])]),_:1})])):n.createCommentVNode("",!0),n.createElementVNode("div",E8,[n.createElementVNode("span",x8,n.toDisplayString(i.numberOfResultsText),1),n.createVNode(p,{class:"number-shown-select",modelValue:e.numberShown,"onUpdate:modelValue":t[5]||(t[5]=y=>e.numberShown=y),placeholder:"10",onChange:t[6]||(t[6]=y=>i.numberShownChanged(y))},{default:n.withCtx(()=>[(n.openBlock(!0),n.createElementBlock(n.Fragment,null,n.renderList(e.numberDatasetsShown,y=>(n.openBlock(),n.createBlock(m,{key:y,label:y,value:y},null,8,["label","value"]))),128))]),_:1},8,["modelValue"])])])}const fs=Jt(d8,[["render",_8],["__scopeId","data-v-7462cd92"]]);var T8=async function(e){if(!e.ok){let t=await e.json();throw t?new Error(t.message):new Error(e)}return e},O8={searchInput:"",lastSearch:"",results:[],numberOfHits:0,filter:[],loadingCards:!1,numberPerPage:10,page:1,pageModel:1,start:0,hasSearched:!1,contextCardEnabled:!1};const B8={components:{SearchFilters:fs,DatasetCard:Iy,SearchHistory:us,Button:pt,Card:ii,Drawer:Ol,Icon:ke,Input:Ko,Pagination:ui},name:"DatasetExplorer",props:{visible:{type:Boolean,default:!1},isDrawer:{type:Boolean,default:!0},entry:{type:Object,default:()=>O8},envVars:{type:Object,default:()=>{}}},data:function(){return{...this.entry,algoliaClient:void 0,bodyStyle:{flex:"1 1 auto","flex-flow":"column",display:"flex"},cascaderIsReady:!1}},computed:{filterEntry:function(){return{numberOfHits:this.numberOfHits,filterFacets:this.filter,showFilters:!0,helper:{within:"'heart' OR 'colon'",between:"'rat' AND 'lung'"}}}},methods:{hoverChanged:function(e){const t=e?{...e,tabType:"dataset"}:{tabType:"dataset"};this.$emit("hover-changed",t)},resetSearch:function(){this.numberOfHits=0,this.discoverIds=[],this._dois=[],this.results=[],this.loadingCards=!1},openSearch:function(e,t=""){if(this.searchInput=t,this.resetPageNavigation(),this.cascaderIsReady){const o=this.$refs.filtersRef.getHierarchicalValidatedFilters(e),r=o.notFound?o.notFound.filter(a=>a.facet.toLowerCase()!=="show all"):[];this.filter=o.result,r.forEach(a=>{eh({message:`${a.facet} cannot be found in ${a.term}!`,appendTo:this.$el,showClose:!0,offset:113})}),e&&e.length>0&&this.filter&&this.filter.length===0?(this.$refs.filtersRef.checkShowAllBoxes(),this.resetSearch()):this.filter&&(this.searchAlgolia(this.filter,t),this.$refs.filtersRef.setCascader(this.filter),this.searchHistoryUpdate(this.filter,t))}else this.filter=e,(!e||e.length==0)&&(this.searchAlgolia(this.filter,t),this.searchHistoryUpdate(this.filter,t))},addFilter:function(e){this.cascaderIsReady?(this.resetPageNavigation(),e&&this.$refs.filtersRef.addFilters(e)&&this.$refs.filtersRef.initiateSearch()):Array.isArray(this.filter)?this.filter.push(...e):this.filter=[...e]},cascaderReady:function(){this.cascaderIsReady=!0,this.openSearch(this.filter,this.searchInput)},clearSearchClicked:function(){this.searchInput="",this.searchAndFilterUpdate()},onResetClick:function(){this.openSearch([],""),this.$emit("search-changed",{value:this.searchInput,tabType:"dataset",type:"reset-update"}),ue.emit("trackEvent",{event_name:"portal_maps_action_filter",category:"reset",location:"map_sidebar_dataset"})},searchEvent:function(e=!1){(e.keyCode===13||e instanceof MouseEvent)&&(this.searchInput=this.searchInput.trim(),this.searchAndFilterUpdate())},filterUpdate:function(e){this.filter=[...e],this.searchAndFilterUpdate(),this.$emit("search-changed",{value:e,tabType:"dataset",type:"filter-update"})},searchAndFilterUpdate:function(){this.resetPageNavigation(),this.searchAlgolia(this.filter,this.searchInput),this.searchHistoryUpdate(this.filter,this.searchInput)},searchHistoryUpdate:function(e,t){this.$refs.searchHistory.selectValue="Search 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t=this.page===1;this.pageChange(1,t)},pageChange:function(e,t=!1){this.start=(e-1)*this.numberPerPage,this.page=e,this.searchAlgolia(this.filter,this.searchInput,this.numberPerPage,this.page),t||ue.emit("trackEvent",{event_name:"portal_maps_dataset_pagination",category:`page_${this.page}`,location:"map_sidebar_dataset"})},handleMissingData:function(e){let t=this.results.findIndex(o=>o.doi===e);this.results[t]&&(this.results[t].detailsReady=!0)},perItemSearch:function(e,t){if(10>t.count){const r=this._dois.shift();r&&(t.count++,this.callSciCrunch(this.envVars.API_LOCATION,{dois:[r]},e).then(a=>{a.numberOfHits===0?this.handleMissingData(r):this.resultsProcessing(a),this.$refs.content.style["overflow-y"]="scroll",t.count--,this.perItemSearch(e,t)}).catch(a=>{a.name!=="AbortError"&&(this.handleMissingData(r),t.count--,this.perItemSearch(e,t))}),this.perItemSearch(e,t))}},scrollToTop:function(){this.$refs.content&&this.$refs.content.scroll({top:0,behavior:"smooth"})},resetPageNavigation:function(){this.start=0,this.page=1},resultsProcessing:function(e){this.lastSearch=this.searchInput,e.results.length!==0&&e.results.forEach(t=>{let o=this.results.findIndex(r=>t.doi?t.doi.includes(r.doi):!1);Object.assign(this.results[o],t),Object.assign(this.results[o],{numberSamples:t.sampleSize?parseInt(t.sampleSize):0,numberSubjects:t.subjectSize?parseInt(t.subjectSize):0,updated:(t.updated&&t.updated.length)>0?t.updated[0].timestamp.split("T")[0]:"",url:t.uri[0],datasetId:t.dataset_identifier,datasetRevision:t.dataset_revision,datasetVersion:t.dataset_version,organs:t.organs&&t.organs.length>0?[...new Set(t.organs.map(r=>r.name))]:void 0,species:t.organisms&&t.organisms[0].species?[...new Set(t.organisms.map(r=>r.species?r.species.name:null))]:void 0,scaffolds:t["abi-scaffold-metadata-file"],thumbnails:t["abi-thumbnail"]?t["abi-thumbnail"]:t["abi-scaffold-thumbnail"],scaffoldViews:t["abi-scaffold-view-file"],videos:t.video,plots:t["abi-plot"],images:t["common-images"],contextualInformation:t["abi-contextual-information"].length>0?t["abi-contextual-information"]:void 0,segmentation:t["mbf-segmentation"],simulation:t["abi-simulation-omex-file"]?t["abi-simulation-omex-file"]:t["abi-simulation-file"],flatmaps:t["abi-flatmap-file"],additionalLinks:t.additionalLinks,detailsReady:!0}),this.results[o]=this.results[o]})},createfilterParams:function(e){let t=new URLSearchParams;for(const o in e)Array.isArray(e[o])?e[o].forEach(r=>{t.append(o,r)}):t.append(o,e[o]);return t.toString()},callSciCrunch:function(e,t={},o){return new Promise((r,a)=>{let i=this.envVars.API_LOCATION+this.searchEndpoint+"?"+this.createfilterParams(t);fetch(i,{signal:o}).then(T8).then(s=>s.json()).then(s=>r(s)).catch(s=>a(s))})},getAlgoliaFacets:async function(){return await this.algoliaClient.getAlgoliaFacets(ed)},searchHistorySearch:function(e){this.searchInput=e.search,this.filter=e.filters,this.openSearch([...e.filters],e.search)},getSearch:function(){return this.searchInput},getFilters:function(){return this.filter.some(t=>t.facet.toLowerCase()!=="show 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