@abi-software/flatmapvuer 1.7.5-beta.0 → 1.7.5-beta.1

package/dist/flatmapvuer.js

@@ -38235,7 +38235,7 @@ w5 = /* @__PURE__ */ new WeakMap(), th = /* @__PURE__ */ new WeakMap(), x5 = /*
           r.minZoom <= o && o < r.maxZoom && (i[o] += 1);
         n.properties["dataset-ids"].push(r.datasetId);
       } else
-        console.error(`Can't find marker for ${r.term}...`);
+        console.log("%cits here", "background:yellow", r.datasetId), console.error(`Can't find marker for ${r.term}...`);
     }
   K(this, t8).features = [];
   for (const e of t.values())
@@ -99447,7 +99447,7 @@ const QGt = TGt("main", {
             provenanceTaxonomy: a
           };
           if (t === "click") {
-            if (this.featuresAlert = e.alert, this.statesTracking.activeClick = !0, this.statesTracking.activeTerm = e == null ? void 0 : e.models, this.viewingMode === "Neuron Connection")
+            if (this.setConnectivityDataSource(this.viewingMode, e), this.featuresAlert = e.alert, this.statesTracking.activeClick = !0, this.statesTracking.activeTerm = e == null ? void 0 : e.models, this.viewingMode === "Neuron Connection")
               this.highlightConnectedPaths([e.models]);
             else if (this.currentActive = e.models ? e.models : "", this.activeDrawTool && !this.isValidDrawnCreated) {
               const d = e.featureId || this.existDrawnFeatures.find(
@@ -99465,11 +99465,23 @@ const QGt = TGt("main", {
             }
           } else t === "mouseenter" && this.viewingMode !== "Neuron Connection" && (this.currentHover = e.models ? e.models : "");
           e && e.type !== "marker" && t === "click" && this.viewingMode !== "Neuron Connection" && // Disable popup when drawing
-          !this.activeDrawTool && (this.connectivityDataSource = e.source, this.checkAndCreatePopups(u)), this.$emit("resource-selected", u);
+          !this.activeDrawTool && this.checkAndCreatePopups(u), this.$emit("resource-selected", u);
         } else
           this.$emit("pan-zoom-callback", e);
       };
     },
+    /**
+     * The data for connectivity data source is just a placeholder data
+     * to check which part of the map is clicked, e.g., path or feture or empty area,
+     * based on the viewing mode.
+     * The "connectivity-info-close" event will be emitted based on this data
+     * when there has a click event on map.
+     * @param viewingMode
+     * @param data
+     */
+    setConnectivityDataSource: function(t, e) {
+      this.connectivityDataSource = e.source, (t === "Neuron Connection" || t === "Annotation") && (this.connectivityDataSource = e.featureId);
+    },
     /**
      * @public
      * Function triggered by viewing mode change.
@@ -100484,7 +100496,7 @@ const QGt = TGt("main", {
   mounted: function() {
     this.openMapRef = dQ(this.$refs.openMapRef), this.backgroundIconRef = dQ(this.$refs.backgroundIconRef), this.tooltipWait.length = this.hoverVisibilities.length, this.flatmapQueries = Oo(new s4t()), this.flatmapQueries.initialise(this.flatmapAPI), this.state ? this.setStateRequired && this.setState(this.state) : this.renderAtMounted && this.createFlatmap(), this.refreshCache();
   }
-}, La = (t) => (mM("data-v-ea91b942"), t = t(), gM(), t), bGt = {
+}, La = (t) => (mM("data-v-60ddbf35"), t = t(), gM(), t), bGt = {
   class: "flatmap-container",
   ref: "flatmapContainer",
   "element-loading-text": "Loading...",
@@ -101200,7 +101212,7 @@ function GGt(t, e, r, n, i, o) {
     [ct, t.loading]
   ]);
 }
-const NY = /* @__PURE__ */ sg(_Gt, [["render", GGt], ["__scopeId", "data-v-ea91b942"]]);
+const NY = /* @__PURE__ */ sg(_Gt, [["render", GGt], ["__scopeId", "data-v-60ddbf35"]]);
 function $Gt(t) {
   return { all: t = t || /* @__PURE__ */ new Map(), on: function(e, r) {
     var n = t.get(e);

package/dist/flatmapvuer.umd.cjs

@@ -615,7 +615,7 @@ best distance: ${T.d}`);const M=[T.x,T.y];return M.distance=T.d,M}function ff(t,
                  C17.762 24.853 24.25 19.186 24.25 12.744A12.254 12.254 0 0 0 12.25.25Z"
               style="fill:{color};stroke:{secondaryColor};stroke-width:1"/>
         <circle cx="12.5" cy="12.5" r="5" fill="{secondaryColor}"/>
-    </svg>`,!1);const n=new Fft(t);await n.createFromTemplate(LB,"marker-large-circle","#EE5900","#fff"),await n.createFromTemplate(BQt,"marker-small-circle","#005974","#fff")}function jQt(t){const e=["step",["zoom"]];for(let r=0;r<=t;r+=1)r>0&&e.push(r),e.push(["to-string",["at",r,["get","zoom-count"]]]);return e}var v0,K8,b0,Rf,L0,w0,Nl,Dl,j4,Nf,Df;class zQt{constructor(e,r){Xt(this,j4),Xt(this,v0,new Map),Xt(this,K8),Xt(this,b0),Xt(this,Rf),Xt(this,L0,new 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t.type==="Polygon"?t.coordinates.length&&(r=t.coordinates[0]):r=t.coordinates,r&&(t.type!=="Point"?(r.map(n=>{e.lng+=parseFloat(n[0]),e.lat+=parseFloat(n[1])}),e.lng=e.lng/r.length,e.lat=e.lat/r.length):(e.lng+=parseFloat(r[0]),e.lat+=parseFloat(r[1]))),e},Dq=(t,e)=>{const r=[];let n=t.organs?t.organs:t.ftus;const i=n?n.filter((o,a)=>n.findIndex(s=>s.label===o.label)===a):void 0;return i&&i.forEach(o=>{const a={label:o.label,models:o.models,key:`${e}.${o.label}`},s=Dq(o,a.key);s.length>0&&(a.children=s),r.push(a)}),r},JFt=function(){return{destinations:[],origins:[],components:[],destinationsWithDatasets:[],originsWithDatasets:[],componentsWithDatasets:[],resource:void 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this.closeTooltip()},confirmDrawnFeature:function(){this.isValidDrawnCreated&&(this.checkAndCreatePopups(this.drawnCreatedEvent),Object.keys(this.connectionEntry).length>0&&(this.annotationEntry.feature.connection=this.connectionEntry),this.initialiseDrawing())},toolbarEvent:function(t,e){if(!this.isValidDrawnCreated){if(this.manualAbortedOnClose(),this.doubleClickedFeature=!1,this.changeAnnotationDrawMode({mode:"simple_select"}),t==="mode")this.activeDrawMode=e;else if(t==="tool"){if(this.cancelDrawnFeature(),e){const r=e.replace(/[A-Z]/g,n=>`_${n.toLowerCase()}`);this.changeAnnotationDrawMode({mode:`draw${r}`})}this.activeDrawTool=e}}},annotationDrawModeEvent:function(t){this.activeDrawMode==="Edit"?this.doubleClickedFeature&&(t.feature.feature.geometry.type!=="Point"&&(this.changeAnnotationDrawMode({mode:"direct_select",options:{featureId:t.feature.feature.id}}),this.modifyAnnotationFeature()),this.doubleClickedFeature=!1):this.activeDrawMode==="Delete"&&(this.changeAnnotationDrawMode({mode:"simple_select",options:{featureIds:[t.feature.feature.id]}}),this.modifyAnnotationFeature())},createConnectivityBody:function(){if(Object.keys(this.connectionEntry).length>0){const t=Object.values(this.connectionEntry),e={type:"connectivity",source:t[0],target:t[t.length-1],intermediates:t.filter((r,n)=>n!==0&&n!==t.length-1)};this.annotationEntry.body=e}},changeAnnotationDrawMode:function(t){this.mapImp&&this.mapImp.changeAnnotationDrawMode(t)},clearAnnotationFeature:function(){this.mapImp&&this.existDrawnFeatures.length>0&&this.mapImp.clearAnnotationFeature()},modifyAnnotationFeature:function(){this.mapImp&&this.mapImp.removeAnnotationFeature()},rollbackAnnotationEvent:function(){this.mapImp&&["created","updated","deleted"].includes(this.annotationEntry.type)&&(this.mapImp.rollbackAnnotationEvent(this.annotationEntry),this.annotationEntry={})},commitAnnotationEvent:function(t){this.mapImp&&["created","updated","deleted"].includes(this.annotationEntry.type)&&t&&(this.featureAnnotationSubmitted=!0,this.mapImp.commitAnnotationEvent(this.annotationEntry),t.body.comment==="Position Updated"?this.annotationEntry.positionUpdated=!1:this.annotationEntry.type==="deleted"&&(this.annotationSidebar&&this.$emit("annotation-close"),this.closeTooltip(),this.annotationEntry={}),this.addAnnotationFeature())},fetchAnnotatedItemIds:async function(t=void 0,e=void 0){let r=await this.annotator.annotatedItemIds(this.userToken,this.serverURL,t,e);return"resource"in r&&(r=r.itemIds),r},setFeatureAnnotated:async function(){if(this.mapImp){const t=await this.fetchAnnotatedItemIds();for(const e of t)this.mapImp.setFeatureAnnotated(e)}},fetchDrawnFeatures:async function(t,e){const r=await this.fetchAnnotatedItemIds(t,e);let n=await this.annotator.drawnFeatures(this.userToken,this.serverURL,r);return"resource"in n&&(n=n.features),n},addAnnotationFeature:async function(){if(this.mapImp){this.featureAnnotationSubmitted||(this.clearAnnotationFeature(),this.loading=!0);const t=this.annotationFrom==="Anyone"?void 0:this.userInformation.orcid?this.userInformation.orcid:"0000-0000-0000-0000",e=this.annotationFrom==="Anyone"?void 0:this.annotationFrom==="Me",r=await this.fetchDrawnFeatures(t,e);if(this.existDrawnFeatures=r,this.loading=!1,!this.featureAnnotationSubmitted)for(const n of r)this.mapImp.addAnnotationFeature(n)}},showAnnotator:function(t){this.mapImp&&(this.mapImp.showAnnotator(t),this.$el.querySelector(".maplibregl-ctrl-group").style.display="none")},setAnnotationFrom:function(t){this.annotationFrom=t,this.mapImp&&(this.manualAbortedOnClose(),this.addAnnotationFeature())},setFlightPath3D:function(t){this.flightPath3DRadio=t,this.mapImp&&this.mapImp.enableFlightPaths(t)},viewLatestMap:function(){let t=this.biologicalSex?this.biologicalSex:void 0;this.entry==="NCBITaxon:9606"&&(t="PATO:0000384");const e={entry:this.entry,biologicalSex:t,viewport:this.mapImp.getState()};this.$emit("view-latest-map",e)},backgroundChangeCallback:function(t){this.currentBackground=t,this.mapImp&&this.mapImp.setBackgroundColour(this.currentBackground,1)},processSystems:function(t){if(this.systems.length=0,t&&t.length>0){const e={label:"All",key:"All",children:[]};t.forEach(r=>{const n={colour:r.colour,enabled:r.enabled,label:r.id,key:r.id},i=Dq(r,n.key);i.length>0&&(n.children=i),e.children.push(n)}),this.systems.push(e)}},processTaxon:function(t,e){this.taxonConnectivity.length=0,uv(this.mapImp,t).then(r=>{r.length&&r.forEach(n=>{let i=!0;e&&(i=e.checkAll?!0:e.checked.includes(n.taxon)),this.taxonConnectivity.push({...n,enabled:i}),this.mapImp&&this.mapImp.enableConnectivityByTaxonIds(n.taxon,i)})})},toggleDrawer:function(){this.drawerOpen=!this.drawerOpen},setColour:function(t){this.colourRadio=t,this.mapImp&&this.mapImp.setPaint({colour:t,outline:this.outlinesRadio})},setOutlines:function(t){this.outlinesRadio=t,this.mapImp&&this.mapImp.setPaint({colour:this.colourRadio,outline:t})},setInitMapState:function(){if(this.mapImp){const t=this.mapImp._map,e=this.mapImp.options.bounds,r=[[e[0],e[1]],[e[2],e[3]]];t.setMaxBounds(null),this.initMapState=_.markRaw({initBounds:r})}},resetView:function(){if(this.mapImp){const t=this.mapImp._map,{initBounds:e}=this.initMapState;t.resetNorthPitch({animate:!1}),e&&t.fitBounds(e,{animate:!1}),this.$refs.skcanSelection&&this.$refs.skcanSelection.reset(),this.$refs.layersSelection&&this.$refs.layersSelection.reset(),this.$refs.systemsSelection&&this.$refs.pathwaysSelection.reset(),this.$refs.pathwaysSelection&&this.$refs.pathwaysSelection.reset()}},zoomIn:function(){this.mapImp&&this.mapImp.zoomIn()},zoomOut:function(){this.mapImp&&this.mapImp.zoomOut()},onSelectionsDataChanged:function(t){this.$emit("pathway-selection-changed",t)},sckanSelected:function(t){this.mapImp&&this.mapImp.enableSckanPath(t.key,t.value)},checkAllSCKAN:function(t){this.mapImp&&t.keys.forEach(e=>this.mapImp.enableSckanPath(e,t.value))},highlightConnectedPaths:async function(t){var e,r;if(this.mapImp){let i=[...this.mapImp.pathModelNodes(t)].map(d=>this.mapImp.featureProperties(d)),o=await this.flatmapQueries.queryForConnectivityNew(this.mapImp,t),a=(r=(e=o==null?void 0:o.ids)==null?void 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e=this.mapImp.taxonFeatureIds(t.key);this.mapImp.enableConnectivityByTaxonIds(t.key,t.value),this.mapImp.zoomToGeoJSONFeatures(e,{noZoomIn:!0})}else this.taxonLeaveDelay=setTimeout(()=>{this.mapImp.unselectGeoJSONFeatures(),t.selections.forEach(e=>{let r=t.checked.includes(e.taxon);this.mapImp.enableConnectivityByTaxonIds(e.taxon,r)})},1e3)},checkAllTaxons:function(t){this.mapImp&&this.mapImp.enableConnectivityByTaxonIds(t.keys,t.value)},pathwaysSelected:function(t){this.mapImp&&this.mapImp.enablePath(t.key,t.value)},checkAllPathways:function(t){this.mapImp&&t.keys.forEach(e=>this.mapImp.enablePath(e,t.value))},enablePanZoomEvents:function(t){this.mapImp.enablePanZoomEvents(t)},annotationEventCallback:function(t,e){if(e.type==="aborted")this.featureAnnotationSubmitted?this.featureAnnotationSubmitted=!1:this.rollbackAnnotationEvent(),this.annotationEntry={};else if(e.type==="modeChanged")e.feature.mode==="direct_select"&&(this.doubleClickedFeature=!0),this.annotationSidebar&&e.feature.mode==="simple_select"&&this.activeDrawMode==="Deleted"&&this.annotationEventCallback({},{type:"aborted"});else if(e.type==="selectionChanged"){if(this.selectedDrawnFeature=e.feature.features.length===0?void 0:e.feature.features[0],t.feature.feature=this.selectedDrawnFeature,!this.activeDrawTool)if(this.connectionEntry={},this.selectedDrawnFeature){const r=this.existDrawnFeatures.find(n=>n.id===this.selectedDrawnFeature.id);r&&r.connection&&(this.connectionEntry=r.connection),this.annotationDrawModeEvent(t)}else this.annotationSidebar&&this.previousEditEvent.type==="updated"&&(this.annotationEntry={...this.previousEditEvent,resourceId:this.serverURL},this.annotationEventCallback({},{type:"aborted"})),this.previousEditEvent={}}else{if(e.type==="created"||e.type==="updated"){e.type==="updated"&&e.feature.action&&(e.positionUpdated=e.feature.action==="move");const r=this.mapImp.refreshAnnotationFeatureGeometry(e.feature);t.feature.feature=r}e.type==="created"?this.drawnCreatedEvent=t:this.checkAndCreatePopups(t)}e.type==="updated"&&(this.previousEditEvent=e),e.type==="deleted"?this.previousDeletedEvent=e:this.previousDeletedEvent={}},eventCallback:function(){return(t,e,...r)=>{if(t==="annotation"){const n={feature:e,userData:r,eventType:t};this.annotationEventCallback(n,e)}else if(t!=="pan-zoom"){const n=e.label,i=[e.models],o=this.entry,a=this.biologicalSex;let s;e.taxons&&(typeof e.taxons!="object"?s=JSON.parse(e.taxons):s=e.taxons);const u={dataset:e.dataset,biologicalSex:a,taxonomy:o,resource:i,label:n,feature:e,userData:r,eventType:t,provenanceTaxonomy:s};if(t==="click"){if(this.featuresAlert=e.alert,this.statesTracking.activeClick=!0,this.statesTracking.activeTerm=e==null?void 0:e.models,this.viewingMode==="Neuron Connection")this.highlightConnectedPaths([e.models]);else if(this.currentActive=e.models?e.models:"",this.activeDrawTool&&!this.isValidDrawnCreated){const d=e.featureId||this.existDrawnFeatures.find(f=>f.id===e.id);if(this.activeDrawTool==="LineString"&&d){const f=e.featureId?e.featureId:e.id,T=e.label?e.label:`Feature ${e.id}`;this.connectionEntry[` ${f}`]=Object.assign({label:T},Object.fromEntries(Object.entries(e).filter(([Q])=>["featureId","models"].includes(Q)).map(([Q,y])=>[Q==="featureId"?"id":Q,y])))}}}else t==="mouseenter"&&this.viewingMode!=="Neuron Connection"&&(this.currentHover=e.models?e.models:"");e&&e.type!=="marker"&&t==="click"&&this.viewingMode!=="Neuron Connection"&&!this.activeDrawTool&&(this.connectivityDataSource=e.source,this.checkAndCreatePopups(u)),this.$emit("resource-selected",u)}else this.$emit("pan-zoom-callback",e)}},changeViewingMode:function(t){t&&(this.viewingMode=t),this.manualAbortedOnClose()},removeActiveTooltips:function(){this.mapImp&&this.mapImp.removePopup(),this.$el.querySelectorAll(".flatmap-tooltip-popup").forEach(e=>e.remove())},createTooltipForConnectivity:function(t,e){const r=document.createElement("div");r.classList.add("flatmap-feature-label"),t.forEach((n,i)=>{const{label:o}=n;if(r.append(ok(o)),i+1<t.length){const a=document.createElement("hr");r.appendChild(a)}}),this.mapImp.showPopup(e,r,{className:"custom-popup flatmap-tooltip-popup",positionAtLastClick:!1,preserveSelection:!0})},showConnectivityTooltips:function(t){const{connectivityInfo:e,data:r}=t,n=[],i=[],o=[],a=[],s=[];if(r.length?r.forEach(u=>{o.push({id:u.id,label:u.label})}):this.removeActiveTooltips(),e&&e.featureId&&n.push(...e.featureId),this.mapImp){if(o.forEach((f,T)=>{const{id:Q,label:y}=f,b=this.mapImp.search(Q);if(b!=null&&b.results.length){const w=b==null?void 0:b.results[0].featureId;a.push({featureId:w,id:Q,label:y})}else s.push(f)}),a.length){let f=a[0].featureId;this.mapImp.annotations.forEach(T=>{const Q=T["anatomical-nodes"];if(Q){const y=Q.join("");a.every(w=>y.indexOf(w.id)!==-1)&&(f=T.featureId,i.push(f))}}),this.createTooltipForConnectivity(a,f)}else s.push(...o),this.removeActiveTooltips();s.length&&this.emitConnectivityGraphError(s);const d=[...this.mapImp.modelFeatureIdList(n),...i];this.mapImp.selectGeoJSONFeatures(d)}},showConnectivitiesByReference:function(t){this.searchConnectivitiesByReference(t).then(e=>{this.mapImp.selectFeatures(e)})},searchConnectivitiesByReference:async function(t){const e=sessionStorage.getItem("flatmap-knowledge");let r=[];return e?r=await this.getReferenceConnectivitiesFromStorage(t):r=await this.getReferenceConnectivitiesByAPI(t),r},getReferenceConnectivitiesFromStorage:async function(t){const e=sessionStorage.getItem("flatmap-knowledge");if(e){const 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+This will fail in production.`);s=Eh,s._s.has(n)||(o?iH(n,e,i,s):Nq(n,i,s),process.env.NODE_ENV!=="production"&&(a._pinia=s));const f=s._s.get(n);if(process.env.NODE_ENV!=="production"&&u){const T="__hot:"+n,Q=o?iH(T,e,i,s,!0):Nq(T,Ka({},i),s,!0);u._hotUpdate(Q),delete s.state.value[T],s._s.delete(T)}if(process.env.NODE_ENV!=="production"&&eH){const T=_.getCurrentInstance();if(T&&T.proxy&&!u){const Q=T.proxy,y="_pStores"in Q?Q._pStores:Q._pStores={};y[n]=f}}return f}return a.$id=n,a}function ZFt(t,e){return Array.isArray(e)?e.reduce((r,n)=>(r[n]=function(){return t(this.$pinia)[n]},r),{}):Object.keys(e).reduce((r,n)=>(r[n]=function(){const i=t(this.$pinia),o=e[n];return typeof o=="function"?o.call(this,i):i[o]},r),{})}const qFt=WFt("main",{state:()=>({userProfile:{token:""}}),getters:{userToken(t){return t.userProfile.token}},actions:{setUserToken(t){this.userProfile.token=t}}}),XFt="cannot be found on the map.",KFt=24*60*60*1e3,YFt=t=>{let e={lng:0,lat:0},r;return t.type==="Polygon"?t.coordinates.length&&(r=t.coordinates[0]):r=t.coordinates,r&&(t.type!=="Point"?(r.map(n=>{e.lng+=parseFloat(n[0]),e.lat+=parseFloat(n[1])}),e.lng=e.lng/r.length,e.lat=e.lat/r.length):(e.lng+=parseFloat(r[0]),e.lat+=parseFloat(r[1]))),e},Dq=(t,e)=>{const r=[];let n=t.organs?t.organs:t.ftus;const i=n?n.filter((o,a)=>n.findIndex(s=>s.label===o.label)===a):void 0;return i&&i.forEach(o=>{const a={label:o.label,models:o.models,key:`${e}.${o.label}`},s=Dq(o,a.key);s.length>0&&(a.children=s),r.push(a)}),r},JFt=function(){return{destinations:[],origins:[],components:[],destinationsWithDatasets:[],originsWithDatasets:[],componentsWithDatasets:[],resource:void 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0,this.drawnCreatedEvent={}},cancelDrawnFeature:function(){this.isValidDrawnCreated&&(this.annotationSidebar&&this.$emit("annotation-close"),this.closeTooltip(),this.annotationEntry={...this.drawnCreatedEvent.feature,resourceId:this.serverURL},this.rollbackAnnotationEvent(),this.initialiseDrawing())},connectedFeatureTooltip:function(t){if(this.mapImp)if(t){const e=Number(t);let r={feature:{}};if(e){const n=this.mapImp.featureProperties(e);r.feature=n}else{const n=this.existDrawnFeatures.find(i=>i.id===t.replace(" ",""));r.feature.feature=n}this.checkAndCreatePopups(r)}else this.closeTooltip()},confirmDrawnFeature:function(){this.isValidDrawnCreated&&(this.checkAndCreatePopups(this.drawnCreatedEvent),Object.keys(this.connectionEntry).length>0&&(this.annotationEntry.feature.connection=this.connectionEntry),this.initialiseDrawing())},toolbarEvent:function(t,e){if(!this.isValidDrawnCreated){if(this.manualAbortedOnClose(),this.doubleClickedFeature=!1,this.changeAnnotationDrawMode({mode:"simple_select"}),t==="mode")this.activeDrawMode=e;else if(t==="tool"){if(this.cancelDrawnFeature(),e){const r=e.replace(/[A-Z]/g,n=>`_${n.toLowerCase()}`);this.changeAnnotationDrawMode({mode:`draw${r}`})}this.activeDrawTool=e}}},annotationDrawModeEvent:function(t){this.activeDrawMode==="Edit"?this.doubleClickedFeature&&(t.feature.feature.geometry.type!=="Point"&&(this.changeAnnotationDrawMode({mode:"direct_select",options:{featureId:t.feature.feature.id}}),this.modifyAnnotationFeature()),this.doubleClickedFeature=!1):this.activeDrawMode==="Delete"&&(this.changeAnnotationDrawMode({mode:"simple_select",options:{featureIds:[t.feature.feature.id]}}),this.modifyAnnotationFeature())},createConnectivityBody:function(){if(Object.keys(this.connectionEntry).length>0){const t=Object.values(this.connectionEntry),e={type:"connectivity",source:t[0],target:t[t.length-1],intermediates:t.filter((r,n)=>n!==0&&n!==t.length-1)};this.annotationEntry.body=e}},changeAnnotationDrawMode:function(t){this.mapImp&&this.mapImp.changeAnnotationDrawMode(t)},clearAnnotationFeature:function(){this.mapImp&&this.existDrawnFeatures.length>0&&this.mapImp.clearAnnotationFeature()},modifyAnnotationFeature:function(){this.mapImp&&this.mapImp.removeAnnotationFeature()},rollbackAnnotationEvent:function(){this.mapImp&&["created","updated","deleted"].includes(this.annotationEntry.type)&&(this.mapImp.rollbackAnnotationEvent(this.annotationEntry),this.annotationEntry={})},commitAnnotationEvent:function(t){this.mapImp&&["created","updated","deleted"].includes(this.annotationEntry.type)&&t&&(this.featureAnnotationSubmitted=!0,this.mapImp.commitAnnotationEvent(this.annotationEntry),t.body.comment==="Position Updated"?this.annotationEntry.positionUpdated=!1:this.annotationEntry.type==="deleted"&&(this.annotationSidebar&&this.$emit("annotation-close"),this.closeTooltip(),this.annotationEntry={}),this.addAnnotationFeature())},fetchAnnotatedItemIds:async function(t=void 0,e=void 0){let r=await this.annotator.annotatedItemIds(this.userToken,this.serverURL,t,e);return"resource"in r&&(r=r.itemIds),r},setFeatureAnnotated:async function(){if(this.mapImp){const t=await this.fetchAnnotatedItemIds();for(const e of t)this.mapImp.setFeatureAnnotated(e)}},fetchDrawnFeatures:async function(t,e){const r=await this.fetchAnnotatedItemIds(t,e);let n=await this.annotator.drawnFeatures(this.userToken,this.serverURL,r);return"resource"in n&&(n=n.features),n},addAnnotationFeature:async function(){if(this.mapImp){this.featureAnnotationSubmitted||(this.clearAnnotationFeature(),this.loading=!0);const t=this.annotationFrom==="Anyone"?void 0:this.userInformation.orcid?this.userInformation.orcid:"0000-0000-0000-0000",e=this.annotationFrom==="Anyone"?void 0:this.annotationFrom==="Me",r=await this.fetchDrawnFeatures(t,e);if(this.existDrawnFeatures=r,this.loading=!1,!this.featureAnnotationSubmitted)for(const n of r)this.mapImp.addAnnotationFeature(n)}},showAnnotator:function(t){this.mapImp&&(this.mapImp.showAnnotator(t),this.$el.querySelector(".maplibregl-ctrl-group").style.display="none")},setAnnotationFrom:function(t){this.annotationFrom=t,this.mapImp&&(this.manualAbortedOnClose(),this.addAnnotationFeature())},setFlightPath3D:function(t){this.flightPath3DRadio=t,this.mapImp&&this.mapImp.enableFlightPaths(t)},viewLatestMap:function(){let t=this.biologicalSex?this.biologicalSex:void 0;this.entry==="NCBITaxon:9606"&&(t="PATO:0000384");const e={entry:this.entry,biologicalSex:t,viewport:this.mapImp.getState()};this.$emit("view-latest-map",e)},backgroundChangeCallback:function(t){this.currentBackground=t,this.mapImp&&this.mapImp.setBackgroundColour(this.currentBackground,1)},processSystems:function(t){if(this.systems.length=0,t&&t.length>0){const e={label:"All",key:"All",children:[]};t.forEach(r=>{const n={colour:r.colour,enabled:r.enabled,label:r.id,key:r.id},i=Dq(r,n.key);i.length>0&&(n.children=i),e.children.push(n)}),this.systems.push(e)}},processTaxon:function(t,e){this.taxonConnectivity.length=0,uv(this.mapImp,t).then(r=>{r.length&&r.forEach(n=>{let i=!0;e&&(i=e.checkAll?!0:e.checked.includes(n.taxon)),this.taxonConnectivity.push({...n,enabled:i}),this.mapImp&&this.mapImp.enableConnectivityByTaxonIds(n.taxon,i)})})},toggleDrawer:function(){this.drawerOpen=!this.drawerOpen},setColour:function(t){this.colourRadio=t,this.mapImp&&this.mapImp.setPaint({colour:t,outline:this.outlinesRadio})},setOutlines:function(t){this.outlinesRadio=t,this.mapImp&&this.mapImp.setPaint({colour:this.colourRadio,outline:t})},setInitMapState:function(){if(this.mapImp){const t=this.mapImp._map,e=this.mapImp.options.bounds,r=[[e[0],e[1]],[e[2],e[3]]];t.setMaxBounds(null),this.initMapState=_.markRaw({initBounds:r})}},resetView:function(){if(this.mapImp){const t=this.mapImp._map,{initBounds:e}=this.initMapState;t.resetNorthPitch({animate:!1}),e&&t.fitBounds(e,{animate:!1}),this.$refs.skcanSelection&&this.$refs.skcanSelection.reset(),this.$refs.layersSelection&&this.$refs.layersSelection.reset(),this.$refs.systemsSelection&&this.$refs.pathwaysSelection.reset(),this.$refs.pathwaysSelection&&this.$refs.pathwaysSelection.reset()}},zoomIn:function(){this.mapImp&&this.mapImp.zoomIn()},zoomOut:function(){this.mapImp&&this.mapImp.zoomOut()},onSelectionsDataChanged:function(t){this.$emit("pathway-selection-changed",t)},sckanSelected:function(t){this.mapImp&&this.mapImp.enableSckanPath(t.key,t.value)},checkAllSCKAN:function(t){this.mapImp&&t.keys.forEach(e=>this.mapImp.enableSckanPath(e,t.value))},highlightConnectedPaths:async function(t){var e,r;if(this.mapImp){let i=[...this.mapImp.pathModelNodes(t)].map(d=>this.mapImp.featureProperties(d)),o=await this.flatmapQueries.queryForConnectivityNew(this.mapImp,t),a=(r=(e=o==null?void 0:o.ids)==null?void 0:e.dendrites)==null?void 0:r.flat().flat(),s=[],u=!1;i.forEach(d=>{this.mapImp.nodePathModels(d.featureId).forEach(f=>{u=!0,this.mapImp.pathModelNodes(f).forEach(Q=>{let y=this.mapImp.featureProperties([Q]);if(a.includes(y.models)){u=!1;return}}),u&&s.push(f)})}),this.mapImp.zoomToFeatures(s,{noZoomIn:!0})}},resetMapFilter:function(){const t=this.mapFilters.alert;let e;t.with?t.without||(e={HAS:"alert"}):t.without?e={NOT:{HAS:"alert"}}:e={AND:[{NOT:{HAS:"alert"}},{HAS:"alert"}]},e?this.mapImp.setVisibilityFilter(e):this.mapImp.clearVisibilityFilter()},alertMouseEnterEmitted:function(t){if(this.mapImp)if(t.value){let e;t.key==="alert"?e={HAS:"alert"}:t.key==="withoutAlert"&&(e={NOT:{HAS:"alert"}}),this.mapImp.setVisibilityFilter(e)}else this.resetMapFilter()},alertSelected:function(t){this.mapImp&&(t.key==="alert"?t.value?this.mapFilters.alert.with=!0:this.mapFilters.alert.with=!1:t.key==="withoutAlert"&&(t.value?this.mapFilters.alert.without=!0:this.mapFilters.alert.without=!1),this.resetMapFilter())},checkAllAlerts:function(t){this.mapImp&&(t.value?(this.mapFilters.alert.without=!0,this.mapFilters.alert.with=!0):(this.mapFilters.alert.without=!1,this.mapFilters.alert.with=!1),this.resetMapFilter())},systemSelected:function(t){this.mapImp&&this.mapImp.enableSystem(t.key,t.value)},checkAllSystems:function(t){this.mapImp&&this.systems[0].children.forEach(e=>this.mapImp.enableSystem(e.label,t))},ftuSelected:function(t){this.searchAndShowResult(t,!0)},layersSelected:function(t){this.mapImp&&this.mapImp.enableLayer(t.key,t.value)},checkAllLayers:function(t){this.mapImp&&t.keys.forEach(e=>this.mapImp.enableLayer(e,t.value))},taxonsSelected:function(t){this.mapImp&&this.mapImp.enableConnectivityByTaxonIds(t.key,t.value)},taxonMouseEnterEmitted:function(t){if(this.mapImp)if(t.value){clearTimeout(this.taxonLeaveDelay);let e=this.mapImp.taxonFeatureIds(t.key);this.mapImp.enableConnectivityByTaxonIds(t.key,t.value),this.mapImp.zoomToGeoJSONFeatures(e,{noZoomIn:!0})}else this.taxonLeaveDelay=setTimeout(()=>{this.mapImp.unselectGeoJSONFeatures(),t.selections.forEach(e=>{let r=t.checked.includes(e.taxon);this.mapImp.enableConnectivityByTaxonIds(e.taxon,r)})},1e3)},checkAllTaxons:function(t){this.mapImp&&this.mapImp.enableConnectivityByTaxonIds(t.keys,t.value)},pathwaysSelected:function(t){this.mapImp&&this.mapImp.enablePath(t.key,t.value)},checkAllPathways:function(t){this.mapImp&&t.keys.forEach(e=>this.mapImp.enablePath(e,t.value))},enablePanZoomEvents:function(t){this.mapImp.enablePanZoomEvents(t)},annotationEventCallback:function(t,e){if(e.type==="aborted")this.featureAnnotationSubmitted?this.featureAnnotationSubmitted=!1:this.rollbackAnnotationEvent(),this.annotationEntry={};else if(e.type==="modeChanged")e.feature.mode==="direct_select"&&(this.doubleClickedFeature=!0),this.annotationSidebar&&e.feature.mode==="simple_select"&&this.activeDrawMode==="Deleted"&&this.annotationEventCallback({},{type:"aborted"});else if(e.type==="selectionChanged"){if(this.selectedDrawnFeature=e.feature.features.length===0?void 0:e.feature.features[0],t.feature.feature=this.selectedDrawnFeature,!this.activeDrawTool)if(this.connectionEntry={},this.selectedDrawnFeature){const r=this.existDrawnFeatures.find(n=>n.id===this.selectedDrawnFeature.id);r&&r.connection&&(this.connectionEntry=r.connection),this.annotationDrawModeEvent(t)}else this.annotationSidebar&&this.previousEditEvent.type==="updated"&&(this.annotationEntry={...this.previousEditEvent,resourceId:this.serverURL},this.annotationEventCallback({},{type:"aborted"})),this.previousEditEvent={}}else{if(e.type==="created"||e.type==="updated"){e.type==="updated"&&e.feature.action&&(e.positionUpdated=e.feature.action==="move");const r=this.mapImp.refreshAnnotationFeatureGeometry(e.feature);t.feature.feature=r}e.type==="created"?this.drawnCreatedEvent=t:this.checkAndCreatePopups(t)}e.type==="updated"&&(this.previousEditEvent=e),e.type==="deleted"?this.previousDeletedEvent=e:this.previousDeletedEvent={}},eventCallback:function(){return(t,e,...r)=>{if(t==="annotation"){const n={feature:e,userData:r,eventType:t};this.annotationEventCallback(n,e)}else if(t!=="pan-zoom"){const n=e.label,i=[e.models],o=this.entry,a=this.biologicalSex;let s;e.taxons&&(typeof e.taxons!="object"?s=JSON.parse(e.taxons):s=e.taxons);const u={dataset:e.dataset,biologicalSex:a,taxonomy:o,resource:i,label:n,feature:e,userData:r,eventType:t,provenanceTaxonomy:s};if(t==="click"){if(this.setConnectivityDataSource(this.viewingMode,e),this.featuresAlert=e.alert,this.statesTracking.activeClick=!0,this.statesTracking.activeTerm=e==null?void 0:e.models,this.viewingMode==="Neuron Connection")this.highlightConnectedPaths([e.models]);else if(this.currentActive=e.models?e.models:"",this.activeDrawTool&&!this.isValidDrawnCreated){const d=e.featureId||this.existDrawnFeatures.find(f=>f.id===e.id);if(this.activeDrawTool==="LineString"&&d){const f=e.featureId?e.featureId:e.id,T=e.label?e.label:`Feature ${e.id}`;this.connectionEntry[` ${f}`]=Object.assign({label:T},Object.fromEntries(Object.entries(e).filter(([Q])=>["featureId","models"].includes(Q)).map(([Q,y])=>[Q==="featureId"?"id":Q,y])))}}}else t==="mouseenter"&&this.viewingMode!=="Neuron Connection"&&(this.currentHover=e.models?e.models:"");e&&e.type!=="marker"&&t==="click"&&this.viewingMode!=="Neuron Connection"&&!this.activeDrawTool&&this.checkAndCreatePopups(u),this.$emit("resource-selected",u)}else this.$emit("pan-zoom-callback",e)}},setConnectivityDataSource:function(t,e){this.connectivityDataSource=e.source,(t==="Neuron Connection"||t==="Annotation")&&(this.connectivityDataSource=e.featureId)},changeViewingMode:function(t){t&&(this.viewingMode=t),this.manualAbortedOnClose()},removeActiveTooltips:function(){this.mapImp&&this.mapImp.removePopup(),this.$el.querySelectorAll(".flatmap-tooltip-popup").forEach(e=>e.remove())},createTooltipForConnectivity:function(t,e){const r=document.createElement("div");r.classList.add("flatmap-feature-label"),t.forEach((n,i)=>{const{label:o}=n;if(r.append(ok(o)),i+1<t.length){const a=document.createElement("hr");r.appendChild(a)}}),this.mapImp.showPopup(e,r,{className:"custom-popup flatmap-tooltip-popup",positionAtLastClick:!1,preserveSelection:!0})},showConnectivityTooltips:function(t){const{connectivityInfo:e,data:r}=t,n=[],i=[],o=[],a=[],s=[];if(r.length?r.forEach(u=>{o.push({id:u.id,label:u.label})}):this.removeActiveTooltips(),e&&e.featureId&&n.push(...e.featureId),this.mapImp){if(o.forEach((f,T)=>{const{id:Q,label:y}=f,b=this.mapImp.search(Q);if(b!=null&&b.results.length){const w=b==null?void 0:b.results[0].featureId;a.push({featureId:w,id:Q,label:y})}else s.push(f)}),a.length){let f=a[0].featureId;this.mapImp.annotations.forEach(T=>{const Q=T["anatomical-nodes"];if(Q){const y=Q.join("");a.every(w=>y.indexOf(w.id)!==-1)&&(f=T.featureId,i.push(f))}}),this.createTooltipForConnectivity(a,f)}else s.push(...o),this.removeActiveTooltips();s.length&&this.emitConnectivityGraphError(s);const d=[...this.mapImp.modelFeatureIdList(n),...i];this.mapImp.selectGeoJSONFeatures(d)}},showConnectivitiesByReference:function(t){this.searchConnectivitiesByReference(t).then(e=>{this.mapImp.selectFeatures(e)})},searchConnectivitiesByReference:async function(t){const e=sessionStorage.getItem("flatmap-knowledge");let r=[];return e?r=await this.getReferenceConnectivitiesFromStorage(t):r=await this.getReferenceConnectivitiesByAPI(t),r},getReferenceConnectivitiesFromStorage:async function(t){const e=sessionStorage.getItem("flatmap-knowledge");if(e){const i=JSON.parse(e).filter(o=>o.references&&o.references.length).filter(o=>o.references.includes(t));if(i.length)return i.map(a=>a.id)}return[]},getReferenceConnectivitiesByAPI:async function(t){const r=`select knowledge from knowledge
         where source="${this.getKnowledgeSource(this.mapImp)}" and
         knowledge like "%${t}%" order by source desc`;return(await this.flatmapQueries.flatmapQuery(r)).values.map(s=>s[0]).map(s=>JSON.parse(s)).map(s=>s.id)},emitConnectivityGraphError:function(t){this.$emit("connectivity-graph-error",{data:{errorData:t,errorMessage:XFt}})},checkAndCreatePopups:async function(t){if(this.viewingMode==="Annotation")t.feature?(this.annotationSidebar&&this.previousDeletedEvent.type==="deleted"&&(this.annotationEntry={...this.previousDeletedEvent,resourceId:this.serverURL},this.annotationEventCallback({},{type:"aborted"})),this.annotationEntry={...t.feature,resourceId:this.serverURL},t.feature.featureId&&t.feature.models?this.displayTooltip(t.feature.models):t.feature.feature&&(this.activeDrawTool||this.activeDrawMode||this.isValidDrawnCreated?(this.featureAnnotationSubmitted=!1,this.annotationEntry.featureId=t.feature.feature.id,this.activeDrawTool&&this.createConnectivityBody(),this.displayTooltip(t.feature.feature.id,YFt(t.feature.feature.geometry))):this.rollbackAnnotationEvent())):this.annotation={};else{let e=await this.flatmapQueries.retrieveFlatmapKnowledgeForEvent(this.mapImp,t);this.loadAndStoreKnowledge(this.mapImp),(e&&e[0]||t.feature.hyperlinks&&t.feature.hyperlinks.length>0)&&(this.resourceForTooltip=t.resource[0],t.resourceForTooltip=this.resourceForTooltip,this.createTooltipFromNeuronCuration(t))}},removeAllCacheData:function(){["flatmap-knowledge","flatmap-knowledge-expiry"].forEach(e=>{sessionStorage.removeItem(e)})},refreshCache:function(){const t=sessionStorage.getItem("flatmap-knowledge-expiry");new Date().getTime()>t&&this.removeAllCacheData()},updateCacheExpiry:function(){const e=new Date().getTime()+KFt;sessionStorage.setItem("flatmap-knowledge-expiry",e)},loadAndStoreKnowledge:function(t){const r=`select knowledge from knowledge
         where source="${this.getKnowledgeSource(t)}"
-        order by source desc`;sessionStorage.getItem("flatmap-knowledge")||this.flatmapQueries.flatmapQuery(r).then(i=>{const a=i.values.map(s=>s[0]).map(s=>JSON.parse(s));sessionStorage.setItem("flatmap-knowledge",JSON.stringify(a)),this.updateCacheExpiry()})},getKnowledgeSource:function(t){var r;let e="";if((r=t.provenance)!=null&&r.connectivity){const n=t.provenance.connectivity;"knowledge-source"in n?e=n["knowledge-source"]:"npo"in n&&(e=`${n.npo.release}-npo`)}return e},popUpCssHacks:function(){const t=document.querySelector(".flatmap-tooltip-popup"),e=document.querySelector(".maplibregl-popup-close-button");t&&(t.style.display="none"),e.style.display="block",this.$refs.tooltip.$el.style.display="flex",e.onclick=()=>{this.$emit("connectivity-info-close"),t&&(t.style.display="block")}},closeTooltip:function(){this.$refs.tooltip&&(this.$refs.tooltip.$el.style.display="none"),document.querySelectorAll(".maplibregl-popup").forEach(t=>{t.style.display="none"})},createTooltipFromNeuronCuration:async function(t){this.tooltipEntry=await this.flatmapQueries.createTooltipData(this.mapImp,t),this.displayTooltip(t.resource[0])},showPopup:function(t,e,r){let n=r;this.mapImp&&(n?n.className||(n.className="custom-popup"):n={className:"custom-popup",positionAtLastClick:!0},this.mapImp.showPopup(t,e,n))},showMarkerPopup:function(t,e,r){this.mapImp&&this.mapImp.showMarkerPopup(t,e,r)},closeMinimap:function(){let t=this.$refs.flatmapContainer.querySelector(".maplibregl-ctrl-minimap");this.minimapSmall?(t.classList.add("enlarge"),t.classList.remove("shrink")):(t.classList.add("shrink"),t.classList.remove("enlarge")),this.minimapSmall=!this.minimapSmall},addResizeButtonToMinimap:function(){let t=this.$refs.flatmapContainer.querySelector(".maplibregl-ctrl-minimap");t&&(this.$refs.minimapResize&&this.$refs.minimapResize.$el.parentNode&&this.$refs.minimapResize.$el.parentNode.removeChild(this.$refs.minimapResize.$el),t.appendChild(this.$refs.minimapResize.$el),this.minimapResizeShow=!0)},setHelpMode:function(t){const e=this.hoverVisibilities.length,r=e-1,n=this.hoverVisibilities[this.helpModeActiveIndex];if(n){const i=n==null?void 0:n.refs,o=n==null?void 0:n.ref,a=this.$refs[i||o];if(a){const{parentElement:s,nextElementSibling:u}=a.$el,d=f=>f&&(f.classList.contains("pathway-container")||f.classList.contains("pathway-location"));(d(s)||d(u))&&(this.requiresDrawer?this.drawerOpen=!0:this.helpModeActiveIndex+=1)}else this.helpModeActiveIndex+=1}t||(this.helpModeActiveIndex=this.helpModeInitialIndex),this.viewingMode!=="Annotation"&&this.helpModeActiveIndex>9&&(this.helpModeActiveIndex=r),t&&this.helpModeActiveIndex>=r&&this.$emit("help-mode-last-item",!0),t&&!this.helpModeDialog?(this.inHelp=!0,this.hoverVisibilities.forEach(i=>{i.value=!0})):t&&this.helpModeDialog&&e>this.helpModeActiveIndex?this.helpModeActiveIndex>-1?(this.closeFlatmapHelpPopup(),setTimeout(()=>{this.inHelp=!1,this.hoverVisibilities.forEach(i=>{i.value=!1}),this.showTooltip(this.helpModeActiveIndex,200)},300)):this.helpModeActiveIndex===-1&&this.openFlatmapHelpPopup():(this.inHelp=!1,this.hoverVisibilities.forEach(i=>{i.value=!1}),this.closeFlatmapHelpPopup())},showTooltip:function(t,e=500){this.inHelp||(clearTimeout(this.tooltipWait[t]),this.tooltipWait[t]=setTimeout(()=>{this.hoverVisibilities[t].value=!0,this.$emit("shown-tooltip")},e))},hideTooltip:function(t,e=500){this.inHelp||(clearTimeout(this.tooltipWait[t]),this.tooltipWait[t]=setTimeout(()=>{this.hoverVisibilities[t].value=!1},e))},displayTooltip:function(t,e=void 0){var i;let r,n={className:"flatmapvuer-popover"};e?(r=t,n.annotationFeatureGeometry=e):(r=this.mapImp.modelFeatureIds(t)[0],this.activeDrawTool||(n.positionAtLastClick=!0)),this.connectivityInfoSidebar&&this.hasTooltipEntry()&&this.viewingMode!=="Annotation"&&(this.featuresAlert&&(this.tooltipEntry.featuresAlert=this.featuresAlert),(i=this.mapImp.provenance)!=null&&i.connectivity&&(this.tooltipEntry["knowledge-source"]=this.getKnowledgeSource(this.mapImp)),this.$emit("connectivity-info-open",this.tooltipEntry)),this.annotationSidebar&&this.viewingMode==="Annotation"&&this.$emit("annotation-open",{annotationEntry:this.annotationEntry,commitCallback:this.commitAnnotationEvent}),!this.disableUI&&(this.viewingMode==="Annotation"&&!this.annotationSidebar||this.viewingMode==="Exploration"&&!this.connectivityInfoSidebar&&this.hasTooltipEntry())&&(this.tooltipDisplay=!0,this.$nextTick(()=>{this.mapImp.showPopup(r,this.$refs.tooltip.$el,n),this.popUpCssHacks()}))},hasTooltipEntry:function(){const{components:t,destinations:e,origins:r,provenanceTaxonomy:n,provenanceTaxonomyLabel:i}=this.tooltipEntry;return!!(t!=null&&t.length||e!=null&&e.length||r!=null&&r.length||n!=null&&n.length||i!=null&&i.length)},moveMap:function(t,e={}){if(this.mapImp){const{offsetX:r=0,offsetY:n=0,zoom:i=4}=e,o=this.mapImp._map,a=this.mapImp._bounds.toArray();this.mapImp.zoomToFeatures(t,{noZoomIn:!0}),this.showPathwaysDrawer(!1),a!=null&&a.length&&setTimeout(()=>{o.fitBounds(a,{offset:[r,n],zoom:i,animate:!0})})}},openFlatmapHelpPopup:function(){if(this.mapImp){let t=this.mapImp.modelFeatureIds("UBERON:0000948");t&&t.length>0&&(this.mapImp.showPopup(t[0],"Click for more information",{anchor:"top",className:"flatmap-popup-popper"}),this.$emit("shown-map-tooltip"))}},closeFlatmapHelpPopup:function(){this.$el.querySelectorAll(".maplibregl-popup-close-button").forEach(t=>{t.click()})},getLabels:function(){let t=[];if(this.mapImp){let e=this.mapImp.annotations;for(let r of e.values())r.label&&t.push(r.label);return Array.from(new Set(t))}},getVisibilityState:function(t){if(["alertSelection","pathwaysSelection","taxonSelection"].forEach(r=>{let n=this.$refs[r];n&&(t[r]=n.getState())}),this.$refs.treeControls){const r=this.$refs.treeControls.$refs.regionTree.getCheckedKeys();t.systemsSelection=r.filter(n=>!n.includes("."))}},setVisibilityState:function(t){["alertSelection","pathwaysSelection","taxonSelection"].forEach(r=>{const n=t[r];if(n){const i=this.$refs[r];i&&i.setState(n)}}),"systemsSelection"in t&&this.$refs.treeControls&&(this.$refs.treeControls.$refs.regionTree.setCheckedKeys(t.systemsSelection),this.systems[0].children.forEach(r=>{this.mapImp.enableSystem(r.key,t.systemsSelection.includes(r.key))}))},getState:function(){if(this.mapImp){let t={entry:this.entry,viewport:this.mapImp.getState()};const e=this.mapImp.getIdentifier();return 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kjt=Kd(Ejt,[["render",Ojt],["__scopeId","data-v-8c396bf6"]]);d1.FlatmapVuer=oH,d1.MultiFlatmapVuer=kjt,Object.defineProperty(d1,Symbol.toStringTag,{value:"Module"})});
+        order by source desc`;sessionStorage.getItem("flatmap-knowledge")||this.flatmapQueries.flatmapQuery(r).then(i=>{const a=i.values.map(s=>s[0]).map(s=>JSON.parse(s));sessionStorage.setItem("flatmap-knowledge",JSON.stringify(a)),this.updateCacheExpiry()})},getKnowledgeSource:function(t){var r;let e="";if((r=t.provenance)!=null&&r.connectivity){const n=t.provenance.connectivity;"knowledge-source"in n?e=n["knowledge-source"]:"npo"in n&&(e=`${n.npo.release}-npo`)}return e},popUpCssHacks:function(){const t=document.querySelector(".flatmap-tooltip-popup"),e=document.querySelector(".maplibregl-popup-close-button");t&&(t.style.display="none"),e.style.display="block",this.$refs.tooltip.$el.style.display="flex",e.onclick=()=>{this.$emit("connectivity-info-close"),t&&(t.style.display="block")}},closeTooltip:function(){this.$refs.tooltip&&(this.$refs.tooltip.$el.style.display="none"),document.querySelectorAll(".maplibregl-popup").forEach(t=>{t.style.display="none"})},createTooltipFromNeuronCuration:async function(t){this.tooltipEntry=await this.flatmapQueries.createTooltipData(this.mapImp,t),this.displayTooltip(t.resource[0])},showPopup:function(t,e,r){let n=r;this.mapImp&&(n?n.className||(n.className="custom-popup"):n={className:"custom-popup",positionAtLastClick:!0},this.mapImp.showPopup(t,e,n))},showMarkerPopup:function(t,e,r){this.mapImp&&this.mapImp.showMarkerPopup(t,e,r)},closeMinimap:function(){let t=this.$refs.flatmapContainer.querySelector(".maplibregl-ctrl-minimap");this.minimapSmall?(t.classList.add("enlarge"),t.classList.remove("shrink")):(t.classList.add("shrink"),t.classList.remove("enlarge")),this.minimapSmall=!this.minimapSmall},addResizeButtonToMinimap:function(){let t=this.$refs.flatmapContainer.querySelector(".maplibregl-ctrl-minimap");t&&(this.$refs.minimapResize&&this.$refs.minimapResize.$el.parentNode&&this.$refs.minimapResize.$el.parentNode.removeChild(this.$refs.minimapResize.$el),t.appendChild(this.$refs.minimapResize.$el),this.minimapResizeShow=!0)},setHelpMode:function(t){const e=this.hoverVisibilities.length,r=e-1,n=this.hoverVisibilities[this.helpModeActiveIndex];if(n){const i=n==null?void 0:n.refs,o=n==null?void 0:n.ref,a=this.$refs[i||o];if(a){const{parentElement:s,nextElementSibling:u}=a.$el,d=f=>f&&(f.classList.contains("pathway-container")||f.classList.contains("pathway-location"));(d(s)||d(u))&&(this.requiresDrawer?this.drawerOpen=!0:this.helpModeActiveIndex+=1)}else 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t===this.helpModeActiveItem&&this.helpMode},onHelpModeLastItem:function(t){t&&this.$emit("help-mode-last-item",!0)},onTooltipShown:function(){this.$emit("shown-tooltip")},onMapTooltipShown:function(){this.$emit("shown-map-tooltip")},changeViewingMode:function(t){this.getCurrentFlatmap().changeViewingMode(t)}},props:{initial:{type:String,default:""},minZoom:{type:Number,default:1},renderAtMounted:{type:Boolean,default:!1},helpMode:{type:Boolean,default:!1},helpModeActiveItem:{type:Number,default:0},helpModeDialog:{type:Boolean,default:!1},helpModeLastItem:{type:Boolean,default:!1},displayMinimap:{type:Boolean,default:!1},showStarInLegend:{type:Boolean,default:!1},enableOpenMapUI:{type:Boolean,default:!1},openMapOptions:{type:Array},availableSpecies:{type:Object,default:function(){return{"Human Female":{taxo:"NCBITaxon:9606",biologicalSex:"PATO:0000383",iconClass:"mapicon-icon_human",displayWarning:!0},"Human Male":{taxo:"NCBITaxon:9606",biologicalSex:"PATO:0000384",iconClass:"mapicon-icon_human",displayWarning:!0},Rat:{taxo:"NCBITaxon:10114",iconClass:"mapicon-icon_rat",displayLatestChanges:!0},Mouse:{taxo:"NCBITaxon:10090",iconClass:"mapicon-icon_mouse",displayWarning:!0},Pig:{taxo:"NCBITaxon:9823",iconClass:"mapicon-icon_pig",displayWarning:!0},Cat:{taxo:"NCBITaxon:9685",iconClass:"mapicon-icon_cat",displayWarning:!0}}}},state:{type:Object,default:void 0},mapManager:{type:Object,default:void 0},flatmapAPI:{type:String,default:"https://mapcore-demo.org/current/flatmap/v3/"},sparcAPI:{type:String,default:"https://api.sparc.science/"},disableUI:{type:Boolean,default:!1},connectivityInfoSidebar:{type:Boolean,default:!1},annotationSidebar:{type:Boolean,default:!1}},data:function(){return{activeSpecies:void 0,speciesList:{},requireInitialisation:!0,resolveList:_.markRaw([]),initialised:!1,mapManagerRef:void 0}},watch:{state:{handler:function(t){this.setState(t)},immediate:!0,deep:!0}}},Mjt=t=>(_.pushScopeId("data-v-8c396bf6"),t=t(),_.popScopeId(),t),Sjt={class:"multi-container",ref:"multiContainer"},Hjt={key:0,style:{position:"absolute","z-index":"100"}},Cjt=Mjt(()=>_.createElementVNode("div",{class:"species-display-text"},"Species",-1)),Ajt={class:"select-box-icon"};function Ojt(t,e,r,n,i,o){const a=ov,s=Wd,u=Zd,d=oH;return _.openBlock(),_.createElementBlock("div",Sjt,[r.disableUI?_.createCommentVNode("",!0):(_.openBlock(),_.createElementBlock("div",Hjt,[Cjt,_.createVNode(u,{content:"Select a species",placement:"right",trigger:"manual","popper-class":"flatmap-popper flatmap-teleport-popper right-popper",width:"max-content",visible:o.activateTooltipByIndex(0),teleported:!1,ref:"selectPopover"},{reference:_.withCtx(()=>[_.createVNode(s,{id:"flatmap-select",teleported:!1,modelValue:t.activeSpecies,"onUpdate:modelValue":e[0]||(e[0]=f=>t.activeSpecies=f),placeholder:"Select",class:"select-box","popper-class":"flatmap-dropdown",onChange:o.setSpecies},{default:_.withCtx(()=>[(_.openBlock(!0),_.createElementBlock(_.Fragment,null,_.renderList(t.speciesList,(f,T)=>(_.openBlock(),_.createBlock(a,{key:T,label:T,value:T},{default:_.withCtx(()=>[_.createElementVNode("span",Ajt,[_.createElementVNode("i",{class:_.normalizeClass(f.iconClass)},null,2)]),_.createTextVNode(" "+_.toDisplayString(T),1)]),_:2},1032,["label","value"]))),128))]),_:1},8,["modelValue","onChange"])]),_:1},8,["visible"])])),(_.openBlock(!0),_.createElementBlock(_.Fragment,null,_.renderList(t.speciesList,(f,T)=>_.withDirectives((_.openBlock(),_.createBlock(d,{key:T,entry:f.taxo,uuid:f.uuid,biologicalSex:f.biologicalSex,displayWarning:f.displayWarning,displayLatestChanges:f.displayLatestChanges,isLegacy:f.isLegacy,ref_for:!0,ref:T,enableOpenMapUI:r.enableOpenMapUI,openMapOptions:r.openMapOptions,disableUI:r.disableUI,onViewLatestMap:o.viewLatestMap,onResourceSelected:o.resourceSelected,onReady:o.FlatmapReady,onPanZoomCallback:o.panZoomCallback,annotationSidebar:r.annotationSidebar,onAnnotationOpen:o.onAnnotationOpen,onAnnotationClose:o.onAnnotationClose,connectivityInfoSidebar:r.connectivityInfoSidebar,onConnectivityInfoOpen:o.onConnectivityInfoOpen,onConnectivityInfoClose:o.onConnectivityInfoClose,onConnectivityGraphError:o.onConnectivityGraphError,onOpenMap:e[1]||(e[1]=Q=>t.$emit("open-map",Q)),onPathwaySelectionChanged:o.onSelectionsDataChanged,minZoom:r.minZoom,helpMode:t.activeSpecies==T&&r.helpMode,helpModeActiveItem:r.helpModeActiveItem,helpModeDialog:r.helpModeDialog,helpModeInitialIndex:-2,onHelpModeLastItem:o.onHelpModeLastItem,onShownTooltip:o.onTooltipShown,onShownMapTooltip:o.onMapTooltipShown,renderAtMounted:r.renderAtMounted,displayMinimap:r.displayMinimap,showStarInLegend:r.showStarInLegend,style:{height:"100%"},mapManager:t.mapManagerRef,flatmapAPI:r.flatmapAPI,sparcAPI:r.sparcAPI},null,8,["entry","uuid","biologicalSex","displayWarning","displayLatestChanges","isLegacy","enableOpenMapUI","openMapOptions","disableUI","onViewLatestMap","onResourceSelected","onReady","onPanZoomCallback","annotationSidebar","onAnnotationOpen","onAnnotationClose","connectivityInfoSidebar","onConnectivityInfoOpen","onConnectivityInfoClose","onConnectivityGraphError","onPathwaySelectionChanged","minZoom","helpMode","helpModeActiveItem","helpModeDialog","onHelpModeLastItem","onShownTooltip","onShownMapTooltip","renderAtMounted","displayMinimap","showStarInLegend","mapManager","flatmapAPI","sparcAPI"])),[[_.vShow,t.activeSpecies==T]])),128))],512)}const kjt=Kd(Ejt,[["render",Ojt],["__scopeId","data-v-8c396bf6"]]);d1.FlatmapVuer=oH,d1.MultiFlatmapVuer=kjt,Object.defineProperty(d1,Symbol.toStringTag,{value:"Module"})});