@abi-software/flatmapvuer 1.4.1 → 1.4.2

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Files changed (7) hide show
  1. package/README.md +4 -3
  2. package/dist/flatmapvuer.js +577 -557
  3. package/dist/flatmapvuer.umd.cjs +2 -2
  4. package/dist/style.css +1 -1
  5. package/package.json +1 -1
  6. package/src/components/FlatmapVuer.vue +46 -22
  7. package/src/services/flatmapQueries.js +5 -1
package/dist/flatmapvuer.umd.cjs CHANGED
@@ -30,7 +30,7 @@ usage: app.provide(ID_INJECTION_KEY, {
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  <circle cx="12.5" cy="12.5" r="9" fill="#fff"></circle>
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  <text x="12" y="17.5" style="font-size:14px;fill:#000;text-anchor:middle">2</text>
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  </svg>
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- </div>`,E_=function(t){return t?[...new Set(t.map(e=>JSON.stringify(e)))].map(e=>JSON.parse(e)):[]},wc={},NO=async function(t,e){return wc&&wc.hasOwnProperty(e)?wc[e]:new Promise(r=>{fetch(`${t}knowledge/label/${e}`,{method:"GET"}).then(n=>n.json()).then(n=>{let i=n.label;i==="Mammalia"&&(i="Mammalia not otherwise specified"),wc[e]=i,r(i)}).catch(n=>{console.error("Error:",n),wc[e]=e,r(e)})})},DO=function(t,e){if(!t||!e)return!1;let r=JSON.stringify(t),n=JSON.stringify(e);return r.indexOf(n)!==-1};let Sst=function(){this.initialise=function(t){this.flatmapApi=t,this.destinations=[],this.origins=[],this.components=[],this.urls=[],this.controller=void 0,this.uberons=[],this.lookUp=[]},this.createTooltipData=async function(t){let e=[];t.feature.hyperlinks&&t.feature.hyperlinks.length>0?e=t.feature.hyperlinks:e=this.urls.map(i=>({url:i,id:"pubmed"}));let r;if(t.provenanceTaxonomy){r=[];for(let i=0;t.provenanceTaxonomy.length>i;i++)r.push(await 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e=t.connectivity.flat(),r=E_(e),n=[],i=!1;return r.forEach(o=>{i=!1,DO(t.axons,o)&&(i=!0),DO(t.dendrites,o)&&(i=!0),i||n.push(o)}),n},this.retrieveFlatmapKnowledgeForEvent=async function(t){this.controller&&this.controller.abort(),this.controller=new AbortController;const e=this.controller.signal,r=t.resource;if(this.destinations=[],this.origins=[],this.components=[],!r||r.length==0)return;let n=this.queryForConnectivity(r,e),i=await this.pubmedQueryOnIds(t);return await Promise.all([n,i])},this.queryForConnectivity=function(t,e,r=!0){const n={sql:this.buildConnectivitySqlStatement(t)},i={method:"POST",headers:{"Content-Type":"application/json"},body:JSON.stringify(n),...e?{signal:e}:{}};return new Promise(o=>{fetch(`${this.flatmapApi}knowledge/query/`,i).then(a=>a.json()).then(a=>{if(this.connectivityExists(a)){let s=JSON.parse(a.values[0][0]);r?this.processConnectivity(s).then(u=>{o(u)}):o(s)}else 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  * MapLibre GL JS
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  * @license 3-Clause BSD. Full text of license: https://github.com/maplibre/maplibre-gl-js/blob/v4.5.2/LICENSE.txt
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null;x=x||st.type,A.push(st)}const k=p.parse(l[1],1,Tr);if(!k)return null;const N=p.parse(l[l.length-1],l.length-1,x);return N?k.type.kind!=="value"&&p.concat(1).checkSubtype(g,k.type)?null:new X(g,x,k,C,A,N):null}evaluate(l){const p=this.input.evaluate(l);return(cn(p)===this.inputType&&this.outputs[this.cases[p]]||this.otherwise).evaluate(l)}eachChild(l){l(this.input),this.outputs.forEach(l),l(this.otherwise)}outputDefined(){return this.outputs.every(l=>l.outputDefined())&&this.otherwise.outputDefined()}}class nt{constructor(l,p,g){this.type=l,this.branches=p,this.otherwise=g}static parse(l,p){if(l.length<4)return p.error(`Expected at least 3 arguments, but found only ${l.length-1}.`);if(l.length%2!=0)return p.error("Expected an odd number of arguments.");let g;p.expectedType&&p.expectedType.kind!=="value"&&(g=p.expectedType);const x=[];for(let A=1;A<l.length-1;A+=2){const k=p.parse(l[A],A,fr);if(!k)return null;const N=p.parse(l[A+1],A+1,g);if(!N)return null;x.push([k,N]),g=g||N.type}const C=p.parse(l[l.length-1],l.length-1,g);if(!C)return null;if(!g)throw new Error("Can't infer output type");return new nt(g,x,C)}evaluate(l){for(const[p,g]of this.branches)if(p.evaluate(l))return g.evaluate(l);return this.otherwise.evaluate(l)}eachChild(l){for(const[p,g]of this.branches)l(p),l(g);l(this.otherwise)}outputDefined(){return this.branches.every(([l,p])=>p.outputDefined())&&this.otherwise.outputDefined()}}class dt{constructor(l,p,g,x){this.type=l,this.input=p,this.beginIndex=g,this.endIndex=x}static parse(l,p){if(l.length<=2||l.length>=5)return p.error(`Expected 3 or 4 arguments, but found ${l.length-1} instead.`);const g=p.parse(l[1],1,Tr),x=p.parse(l[2],2,Ee);if(!g||!x)return null;if(!At(g.type,[ot(Tr),kr,Tr]))return p.error(`Expected first argument to be of type array or string, but found ${at(g.type)} instead`);if(l.length===4){const C=p.parse(l[3],3,Ee);return C?new dt(g.type,g,x,C):null}return new dt(g.type,g,x)}evaluate(l){const p=this.input.evaluate(l),g=this.beginIndex.evaluate(l);if(!Vt(p,["string","array"]))throw new Nn(`Expected first argument to be of type array or string, but found ${at(cn(p))} instead.`);if(this.endIndex){const x=this.endIndex.evaluate(l);return p.slice(g,x)}return p.slice(g)}eachChild(l){l(this.input),l(this.beginIndex),this.endIndex&&l(this.endIndex)}outputDefined(){return!1}}function gt(h,l){const p=h.length-1;let g,x,C=0,A=p,k=0;for(;C<=A;)if(k=Math.floor((C+A)/2),g=h[k],x=h[k+1],g<=l){if(k===p||l<x)return k;C=k+1}else{if(!(g>l))throw new Nn("Input is not a number.");A=k-1}return 0}class Wt{constructor(l,p,g){this.type=l,this.input=p,this.labels=[],this.outputs=[];for(const[x,C]of g)this.labels.push(x),this.outputs.push(C)}static parse(l,p){if(l.length-1<4)return p.error(`Expected at least 4 arguments, but found only ${l.length-1}.`);if((l.length-1)%2!=0)return p.error("Expected an even number of arguments.");const g=p.parse(l[1],1,Ee);if(!g)return null;const x=[];let 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h&&h.__esModule&&Object.prototype.hasOwnProperty.call(h,"default")?h.default:h}var Te=Me;function Me(h,l,p,g){this.cx=3*h,this.bx=3*(p-h)-this.cx,this.ax=1-this.cx-this.bx,this.cy=3*l,this.by=3*(g-l)-this.cy,this.ay=1-this.cy-this.by,this.p1x=h,this.p1y=l,this.p2x=p,this.p2y=g}Me.prototype={sampleCurveX:function(h){return((this.ax*h+this.bx)*h+this.cx)*h},sampleCurveY:function(h){return((this.ay*h+this.by)*h+this.cy)*h},sampleCurveDerivativeX:function(h){return(3*this.ax*h+2*this.bx)*h+this.cx},solveCurveX:function(h,l){if(l===void 0&&(l=1e-6),h<0)return 0;if(h>1)return 1;for(var p=h,g=0;g<8;g++){var x=this.sampleCurveX(p)-h;if(Math.abs(x)<l)return p;var C=this.sampleCurveDerivativeX(p);if(Math.abs(C)<1e-6)break;p-=x/C}var A=0,k=1;for(p=h,g=0;g<20&&(x=this.sampleCurveX(p),!(Math.abs(x-h)<l));g++)h>x?A=p:k=p,p=.5*(k-A)+A;return p},solve:function(h,l){return this.sampleCurveY(this.solveCurveX(h,l))}};var ye=ie(Te);function or(h,l,p){return h+p*(l-h)}function vn(h,l,p){return h.map((g,x)=>or(g,l[x],p))}const Qr={number:or,color:function(h,l,p,g="rgb"){switch(g){case"rgb":{const[x,C,A,k]=vn(h.rgb,l.rgb,p);return new Ur(x,C,A,k,!1)}case"hcl":{const[x,C,A,k]=h.hcl,[N,z,q,K]=l.hcl;let et,st;if(isNaN(x)||isNaN(N))isNaN(x)?isNaN(N)?et=NaN:(et=N,A!==1&&A!==0||(st=z)):(et=x,q!==1&&q!==0||(st=C));else{let $t=N-x;N>x&&$t>180?$t-=360:N<x&&x-N>180&&($t+=360),et=x+p*$t}const[ut,Tt,Lt,St]=function([$t,It,Bt,te]){return $t=isNaN($t)?0:$t*Le,Cr([Bt,Math.cos($t)*It,Math.sin($t)*It,te])}([et,st??or(C,z,p),or(A,q,p),or(k,K,p)]);return new Ur(ut,Tt,Lt,St,!1)}case"lab":{const[x,C,A,k]=Cr(vn(h.lab,l.lab,p));return new Ur(x,C,A,k,!1)}}},array:vn,padding:function(h,l,p){return new Xn(vn(h.values,l.values,p))},variableAnchorOffsetCollection:function(h,l,p){const g=h.values,x=l.values;if(g.length!==x.length)throw new Nn(`Cannot interpolate values of different length. from: ${h.toString()}, to: ${l.toString()}`);const C=[];for(let A=0;A<g.length;A+=2){if(g[A]!==x[A])throw new 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l)if(p.evaluate(h))return!0;return!1}]]},"!":[fr,[fr],(h,[l])=>!l.evaluate(h)],"is-supported-script":[fr,[kr],(h,[l])=>{const p=h.globals&&h.globals.isSupportedScript;return!p||p(l.evaluate(h))}],upcase:[kr,[kr],(h,[l])=>l.evaluate(h).toUpperCase()],downcase:[kr,[kr],(h,[l])=>l.evaluate(h).toLowerCase()],concat:[kr,Ls(Tr),(h,l)=>l.map(p=>hi(p.evaluate(h))).join("")],"resolved-locale":[kr,[ui],(h,[l])=>l.evaluate(h).resolvedLocale()]});class di{constructor(l,p){var g;this.expression=l,this._warningHistory={},this._evaluator=new _s,this._defaultValue=p?(g=p).type==="color"&&Oe(g.default)?new Ur(0,0,0,0):g.type==="color"?Ur.parse(g.default)||null:g.type==="padding"?Xn.parse(g.default)||null:g.type==="variableAnchorOffsetCollection"?ln.parse(g.default)||null:g.default===void 0?null:g.default:null,this._enumValues=p&&p.type==="enum"?p.values:null}evaluateWithoutErrorHandling(l,p,g,x,C,A){return 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h[0]=="string"&&h[0]in bs}function co(h,l){const p=new b1(bs,ws,[],l?function(x){const C={color:ai,string:kr,number:Ee,enum:kr,boolean:fr,formatted:bo,padding:Ji,resolvedImage:wn,variableAnchorOffsetCollection:xt};return x.type==="array"?ot(C[x.value]||Tr,x.length):C[x.type]}(l):void 0),g=p.parse(h,void 0,void 0,void 0,l&&l.type==="string"?{typeAnnotation:"coerce"}:void 0);return g?h5(new di(g,l)):B1(p.errors)}class $i{constructor(l,p){this.kind=l,this._styleExpression=p,this.isStateDependent=l!=="constant"&&!A2(p.expression)}evaluateWithoutErrorHandling(l,p,g,x,C,A){return this._styleExpression.evaluateWithoutErrorHandling(l,p,g,x,C,A)}evaluate(l,p,g,x,C,A){return this._styleExpression.evaluate(l,p,g,x,C,A)}}class E1{constructor(l,p,g,x){this.kind=l,this.zoomStops=g,this._styleExpression=p,this.isStateDependent=l!=="camera"&&!A2(p.expression),this.interpolationType=x}evaluateWithoutErrorHandling(l,p,g,x,C,A){return 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k={type:p.value,values:p.values};x.$version<7&&(k.function=p.function),Zt(p.value)==="object"&&(k=p.value);let N=[];for(let z=0;z<l.length;z++)N=N.concat(A({array:l,arrayIndex:z,value:l[z],valueSpec:k,validateSpec:h.validateSpec,style:g,styleSpec:x,key:`${C}[${z}]`}));return N}function Ga(h){const l=h.key,p=h.value,g=h.valueSpec;let x=Zt(p);return x==="number"&&p!=p&&(x="NaN"),x!=="number"?[new de(l,p,`number expected, ${x} found`)]:"minimum"in g&&p<g.minimum?[new de(l,p,`${p} is less than the minimum value ${g.minimum}`)]:"maximum"in g&&p>g.maximum?[new de(l,p,`${p} is greater than the maximum value ${g.maximum}`)]:[]}function $3(h){const l=h.valueSpec,p=Tn(h.value.type);let g,x,C,A={};const k=p!=="categorical"&&h.value.property===void 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must appear in ascending order")];Tn(Tt[0].zoom)!==C&&(C=Tn(Tt[0].zoom),x=void 0,A={}),ut=ut.concat(Ei({key:`${Lt}[0]`,value:Tt[0],valueSpec:{zoom:{}},validateSpec:st.validateSpec,style:st.style,styleSpec:st.styleSpec,objectElementValidators:{zoom:Ga,value:et}}))}else ut=ut.concat(et({key:`${Lt}[0]`,value:Tt[0],valueSpec:{},validateSpec:st.validateSpec,style:st.style,styleSpec:st.styleSpec},Tt));return xo(s1(Tt[1]))?ut.concat([new de(`${Lt}[1]`,Tt[1],"expressions are not allowed in function stops.")]):ut.concat(st.validateSpec({key:`${Lt}[1]`,value:Tt[1],valueSpec:l,validateSpec:st.validateSpec,style:st.style,styleSpec:st.styleSpec}))}function et(st,ut){const Tt=Zt(st.value),Lt=Tn(st.value),St=st.value!==null?st.value:ut;if(g){if(Tt!==g)return[new de(st.key,St,`${Tt} stop domain type must match previous stop domain type ${g}`)]}else g=Tt;if(Tt!=="number"&&Tt!=="string"&&Tt!=="boolean")return[new de(st.key,St,"stop domain value must be a number, string, or boolean")];if(Tt!=="number"&&p!=="categorical"){let $t=`number expected, ${Tt} found`;return Ua(l)&&p===void 0&&($t+='\nIf you intended to use a categorical function, specify `"type": "categorical"`.'),[new de(st.key,St,$t)]}return p!=="categorical"||Tt!=="number"||isFinite(Lt)&&Math.floor(Lt)===Lt?p!=="categorical"&&Tt==="number"&&x!==void 0&&Lt<x?[new de(st.key,St,"stop domain values must appear in ascending order")]:(x=Lt,p==="categorical"&&Lt in A?[new de(st.key,St,"stop domain values must be unique")]:(A[Lt]=!0,[])):[new de(st.key,St,`integer expected, found ${Lt}`)]}}function z1(h){const l=(h.expressionContext==="property"?xs:co)(s1(h.value),h.valueSpec);if(l.result==="error")return l.value.map(g=>new de(`${h.key}${g.key}`,h.value,g.message));const p=l.value.expression||l.value._styleExpression.expression;if(h.expressionContext==="property"&&h.propertyKey==="text-font"&&!p.outputDefined())return[new de(h.key,h.value,`Invalid data expression for "${h.propertyKey}". Output values must be contained as literals within the expression.`)];if(h.expressionContext==="property"&&h.propertyType==="layout"&&!A2(p))return[new de(h.key,h.value,'"feature-state" data expressions are not supported with layout properties.')];if(h.expressionContext==="filter"&&!A2(p))return[new de(h.key,h.value,'"feature-state" data expressions are not supported with filters.')];if(h.expressionContext&&h.expressionContext.indexOf("cluster")===0){if(!F3(p,["zoom","feature-state"]))return[new de(h.key,h.value,'"zoom" and "feature-state" expressions are not supported with cluster properties.')];if(h.expressionContext==="cluster-initial"&&!C2(p))return[new de(h.key,h.value,"Feature data expressions are not supported with initial expression part of cluster properties.")]}return[]}function $a(h){const l=h.key,p=h.value,g=h.valueSpec,x=[];return Array.isArray(g.values)?g.values.indexOf(Tn(p))===-1&&x.push(new de(l,p,`expected one of [${g.values.join(", ")}], ${JSON.stringify(p)} found`)):Object.keys(g.values).indexOf(Tn(p))===-1&&x.push(new de(l,p,`expected one of [${Object.keys(g.values).join(", ")}], ${JSON.stringify(p)} found`)),x}function P2(h){return F1(s1(h.value))?z1(gi({},h,{expressionContext:"filter",valueSpec:{value:"boolean"}})):Za(h)}function Za(h){const l=h.value,p=h.key;if(Zt(l)!=="array")return[new de(p,l,`array expected, ${Zt(l)} found`)];const g=h.styleSpec;let x,C=[];if(l.length<1)return[new de(p,l,"filter array must have at least 1 element")];switch(C=C.concat($a({key:`${p}[0]`,value:l[0],valueSpec:g.filter_operator,style:h.style,styleSpec:h.styleSpec})),Tn(l[0])){case"<":case"<=":case">":case">=":l.length>=2&&Tn(l[1])==="$type"&&C.push(new de(p,l,`"$type" cannot be use with operator "${l[0]}"`));case"==":case"!=":l.length!==3&&C.push(new de(p,l,`filter array for operator "${l[0]}" must have 3 elements`));case"in":case"!in":l.length>=2&&(x=Zt(l[1]),x!=="string"&&C.push(new de(`${p}[1]`,l[1],`string expected, ${x} found`)));for(let A=2;A<l.length;A++)x=Zt(l[A]),Tn(l[1])==="$type"?C=C.concat($a({key:`${p}[${A}]`,value:l[A],valueSpec:g.geometry_type,style:h.style,styleSpec:h.styleSpec})):x!=="string"&&x!=="number"&&x!=="boolean"&&C.push(new de(`${p}[${A}]`,l[A],`string, number, or boolean expected, ${x} found`));break;case"any":case"all":case"none":for(let A=1;A<l.length;A++)C=C.concat(Za({key:`${p}[${A}]`,value:l[A],style:h.style,styleSpec:h.styleSpec}));break;case"has":case"!has":x=Zt(l[1]),l.length!==2?C.push(new de(p,l,`filter array for "${l[0]}" operator must have 2 elements`)):x!=="string"&&C.push(new de(`${p}[1]`,l[1],`string expected, ${x} found`))}return C}function I2(h,l){const p=h.key,g=h.validateSpec,x=h.style,C=h.styleSpec,A=h.value,k=h.objectKey,N=C[`${l}_${h.layerType}`];if(!N)return[];const z=k.match(/^(.*)-transition$/);if(l==="paint"&&z&&N[z[1]]&&N[z[1]].transition)return g({key:p,value:A,valueSpec:C.transition,style:x,styleSpec:C});const q=h.valueSpec||N[k];if(!q)return[new de(p,A,`unknown property "${k}"`)];let K;if(Zt(A)==="string"&&Ua(q)&&!q.tokens&&(K=/^{([^}]+)}$/.exec(A)))return[new de(p,A,`"${k}" does not support interpolation syntax
@@ -1726,4 +1726,4 @@ DECKGL_FILTER_COLOR(fragColor, geometry);
1726
1726
  state: () => new MyClass()
1727
1727
  Found in store "${U.$id}".`),L&&o&&r.hydrate&&r.hydrate(U.$state,L),d=!0,f=!0,U}function Vzt(t,e,r){let n,i;const o=typeof e=="function";n=t,i=o?r:e;function a(s,u){const d=y.hasInjectionContext();if(s=(process.env.NODE_ENV==="test"&&K9&&K9._testing?null:s)||(d?y.inject(Ozt,null):null),s&&Ng(s),process.env.NODE_ENV!=="production"&&!K9)throw new Error(`[🍍]: "getActivePinia()" was called but there was no active Pinia. Are you trying to use a store before calling "app.use(pinia)"?
1728
1728
  See https://pinia.vuejs.org/core-concepts/outside-component-usage.html for help.
1729
- This will fail in production.`);s=K9,s._s.has(n)||(o?OS(n,e,i,s):Iq(n,i,s),process.env.NODE_ENV!=="production"&&(a._pinia=s));const f=s._s.get(n);if(process.env.NODE_ENV!=="production"&&u){const T="__hot:"+n,Q=o?OS(T,e,i,s,!0):Iq(T,Da({},i),s,!0);u._hotUpdate(Q),delete s.state.value[T],s._s.delete(T)}if(process.env.NODE_ENV!=="production"&&HS){const T=y.getCurrentInstance();if(T&&T.proxy&&!u){const Q=T.proxy,_="_pStores"in Q?Q._pStores:Q._pStores={};_[n]=f}}return f}return a.$id=n,a}function Rzt(t,e){return Array.isArray(e)?e.reduce((r,n)=>(r[n]=function(){return t(this.$pinia)[n]},r),{}):Object.keys(e).reduce((r,n)=>(r[n]=function(){const i=t(this.$pinia),o=e[n];return typeof o=="function"?o.call(this,i):i[o]},r),{})}const Nzt=Vzt("main",{state:()=>({userProfile:{token:""}}),getters:{userToken(t){return t.userProfile.token}},actions:{setUserToken(t){this.userProfile.token=t}}}),Dzt=t=>{let e={lng:0,lat:0},r;return t.type==="Polygon"?r=t.coordinates[0]:r=t.coordinates,t.type!=="Point"?(r.map(n=>{e.lng+=parseFloat(n[0]),e.lat+=parseFloat(n[1])}),e.lng=e.lng/r.length,e.lat=e.lat/r.length):(e.lng+=parseFloat(r[0]),e.lat+=parseFloat(r[1])),e},Vq=(t,e)=>{const r=[];let n=t.organs?t.organs:t.ftus;const i=n?n.filter((o,a)=>n.findIndex(s=>s.label===o.label)===a):void 0;return i&&i.forEach(o=>{const a={label:o.label,models:o.models,key:`${e}.${o.label}`},s=Vq(o,a.key);s.length>0&&(a.children=s),r.push(a)}),r},Bzt=function(){return{destinations:[],origins:[],components:[],destinationsWithDatasets:[],originsWithDatasets:[],componentsWithDatasets:[],resource:void 0}},Fzt={name:"FlatmapVuer",components:{Button:sO,Col:Lc,Loading:dst,Radio:LO,Icon:T1,RadioGroup:wO,Row:bc,Select:gd,Dialog:Mat,MapSvgIcon:SH.MapSvgIcon,MapSvgSpriteColor:SH.MapSvgSpriteColor,Tooltip:_y.Tooltip,TreeControls:_y.TreeControls,SelectionsGroup:VO,SvgLegends:RO,ElIconWarningFilled:NC,ElIconArrowDown:By,ElIconArrowLeft:VC,DrawToolbar:_y.DrawToolbar},beforeCreate:function(){this.setStateRequired=!1},setup(t){return{annotator:y.markRaw(new Czt(`${t.flatmapAPI}annotator`))}},methods:{initialiseDrawing:function(){this.connectionEntry={},this.activeDrawTool=void 0,this.activeDrawMode=void 0,this.drawnCreatedEvent={}},cancelDrawnFeature:function(){this.isValidDrawnCreated&&(this.closeTooltip(),this.annotationEntry={...this.drawnCreatedEvent.feature,resourceId:this.serverURL},this.rollbackAnnotationEvent(),this.initialiseDrawing())},connectedFeatureTooltip:function(t){if(this.mapImp)if(t){const e=Number(t);let r={feature:{}};if(e){const n=this.mapImp.featureProperties(e);r.feature=n}else{const n=this.existDrawnFeatures.find(i=>i.id===t.replace(" ",""));r.feature.feature=n}this.checkAndCreatePopups(r)}else this.closeTooltip()},confirmDrawnFeature:function(){this.isValidDrawnCreated&&(this.checkAndCreatePopups(this.drawnCreatedEvent),Object.keys(this.connectionEntry).length>0&&(this.annotationEntry.feature.connection=this.connectionEntry),this.initialiseDrawing())},toolbarEvent:function(t,e){if(this.closeTooltip(),this.doubleClickedFeature=!1,this.connectionEntry={},t==="mode")this.changeAnnotationDrawMode({mode:"simple_select"}),this.activeDrawMode=e,Object.keys(this.annotationEntry).length>0&&!this.featureAnnotationSubmitted&&this.rollbackAnnotationEvent();else if(t==="tool"){if(e){const r=e.replace(/[A-Z]/g,n=>`_${n.toLowerCase()}`);this.changeAnnotationDrawMode({mode:`draw${r}`}),this.initialiseDrawing()}else this.changeAnnotationDrawMode({mode:"simple_select"}),this.cancelDrawnFeature();this.activeDrawTool=e}},annotationDrawModeEvent:function(t){this.activeDrawMode==="Edit"&&this.doubleClickedFeature&&(t.feature.feature.geometry.type!=="Point"&&(this.changeAnnotationDrawMode({mode:"direct_select",options:{featureId:t.feature.feature.id}}),this.modifyAnnotationFeature()),this.doubleClickedFeature=!1),this.activeDrawMode==="Delete"&&(this.changeAnnotationDrawMode({mode:"simple_select",options:{featureIds:[t.feature.feature.id]}}),this.modifyAnnotationFeature())},createConnectivityBody:function(){if(Object.keys(this.connectionEntry).length>0){const t=Object.values(this.connectionEntry),e={type:"connectivity",source:t[0],target:t[t.length-1],intermediates:t.filter((r,n)=>n!==0&&n!==t.length-1)};this.annotationEntry.body=e}},changeAnnotationDrawMode:function(t){this.mapImp&&this.mapImp.changeAnnotationDrawMode(t)},clearAnnotationFeature:function(){this.mapImp&&this.existDrawnFeatures.length>0&&this.mapImp.clearAnnotationFeature()},modifyAnnotationFeature:function(){this.mapImp&&this.mapImp.removeAnnotationFeature()},rollbackAnnotationEvent:function(){this.mapImp&&["created","updated","deleted"].includes(this.annotationEntry.type)&&(this.mapImp.rollbackAnnotationEvent(this.annotationEntry),this.annotationEntry={})},commitAnnotationEvent:function(t){this.mapImp&&["created","updated","deleted"].includes(this.annotationEntry.type)&&t&&(this.featureAnnotationSubmitted=!0,this.mapImp.commitAnnotationEvent(this.annotationEntry),this.annotationEntry.type==="deleted"?(this.closeTooltip(),this.annotationEntry={}):this.addAnnotationFeature())},fetchAnnotatedItemIds:async function(t=void 0,e=void 0){let r=await this.annotator.annotatedItemIds(this.userToken,this.serverURL,t,e);return"resource"in r&&(r=r.itemIds),r},setFeatureAnnotated:async function(){if(this.mapImp){const t=await this.fetchAnnotatedItemIds();for(const e of t)this.mapImp.setFeatureAnnotated(e)}},fetchDrawnFeatures:async function(t,e){const r=await this.fetchAnnotatedItemIds(t,e);let n=await this.annotator.drawnFeatures(this.userToken,this.serverURL,r);return"resource"in n&&(n=n.features),this.drawnType!=="All tools"&&(n=n.filter(i=>i.geometry.type===this.drawnType)),n},addAnnotationFeature:async function(){if(this.mapImp&&(this.featureAnnotationSubmitted||this.clearAnnotationFeature(),this.drawnType!=="None")){this.featureAnnotationSubmitted||(this.loading=!0);const t=this.annotatedType==="Anyone"?void 0:this.userInformation.orcid?this.userInformation.orcid:"0000-0000-0000-0000",e=this.annotatedType==="Anyone"?void 0:this.annotatedType==="Me",r=await this.fetchDrawnFeatures(t,e);if(this.existDrawnFeatures=r,this.loading=!1,!this.featureAnnotationSubmitted)for(const n of r)this.mapImp.addAnnotationFeature(n)}},showAnnotator:function(t){this.mapImp&&(this.mapImp.showAnnotator(t),this.$el.querySelector(".maplibregl-ctrl-group").style.display="none")},setDrawnType:function(t){this.drawnType=t,this.mapImp&&(this.addAnnotationFeature(),this.initialiseDrawing())},setAnnotatedType:function(t){this.annotatedType=t,this.mapImp&&this.addAnnotationFeature()},setFlightPath3D:function(t){this.flightPath3DRadio=t,this.mapImp&&this.mapImp.enableFlightPaths(t)},viewLatestMap:function(){let t=this.biologicalSex?this.biologicalSex:void 0;this.entry==="NCBITaxon:9606"&&(t="PATO:0000384");const e={entry:this.entry,biologicalSex:t,viewport:this.mapImp.getState()};this.$emit("view-latest-map",e)},backgroundChangeCallback:function(t){this.currentBackground=t,this.mapImp&&this.mapImp.setBackgroundColour(this.currentBackground,1)},processSystems:function(t){if(this.systems.length=0,t&&t.length>0){const e={label:"All",key:"All",children:[]};t.forEach(r=>{const n={colour:r.colour,enabled:r.enabled,label:r.id,key:r.id},i=Vq(r,n.key);i.length>0&&(n.children=i),e.children.push(n)}),this.systems.push(e)}},processTaxon:function(t,e){this.taxonConnectivity.length=0,e.forEach(r=>{NO(t,r).then(n=>{const i={taxon:r,label:n};this.taxonConnectivity.push(i)})})},toggleDrawer:function(){this.drawerOpen=!this.drawerOpen},setColour:function(t){this.colourRadio=t,this.mapImp&&this.mapImp.setColour({colour:t,outline:this.outlinesRadio})},setOutlines:function(t){this.outlineRadio=t,this.mapImp&&this.mapImp.setColour({colour:this.colourRadio,outline:t})},resetView:function(){this.mapImp&&(this.mapImp.resetMap(),this.$refs.centrelinesSelection&&this.$refs.centrelinesSelection.reset(),this.$refs.skcanSelection&&this.$refs.skcanSelection.reset(),this.$refs.layersSelection&&this.$refs.layersSelection.reset(),this.$refs.systemsSelection&&this.$refs.pathwaysSelection.reset(),this.$refs.pathwaysSelection&&this.$refs.pathwaysSelection.reset())},zoomIn:function(){this.mapImp&&this.mapImp.zoomIn()},zoomOut:function(){this.mapImp&&this.mapImp.zoomOut()},centreLinesSelected:function(t){this.mapImp&&this.mapImp.enableCentrelines(t.value)},onSelectionsDataChanged:function(t){this.$emit("pathway-selection-changed",t)},sckanSelected:function(t){this.mapImp&&this.mapImp.enableSckanPath(t.key,t.value)},checkAllSCKAN:function(t){this.mapImp&&t.keys.forEach(e=>this.mapImp.enableSckanPath(e,t.value))},highlightConnectedPaths:async function(t){var e,r;if(this.mapImp){let i=[...this.mapImp.pathModelNodes(t)].map(d=>this.mapImp.featureProperties(d)),o=await this.flatmapQueries.queryForConnectivity(t),a=(r=(e=o==null?void 0:o.ids)==null?void 0:e.dendrites)==null?void 0:r.flat().flat(),s=[],u=!1;i.forEach(d=>{this.mapImp.nodePathModels(d.featureId).forEach(f=>{u=!0,this.mapImp.pathModelNodes(f).forEach(Q=>{let _=this.mapImp.featureProperties([Q]);if(a.includes(_.models)){u=!1;return}}),u&&s.push(f)})}),this.mapImp.zoomToFeatures(s,{noZoomIn:!0})}},resetMapFilter:function(){const t=this.mapFilters.alert;let e;t.with?t.without||(e={HAS:"alert"}):t.without?e={NOT:{HAS:"alert"}}:e={AND:[{NOT:{HAS:"alert"}},{HAS:"alert"}]},e?this.mapImp.setVisibilityFilter(e):this.mapImp.clearVisibilityFilter()},alertMouseEnterEmitted:function(t){if(this.mapImp)if(t.value){let e;t.key==="alert"?e={HAS:"alert"}:t.key==="withoutAlert"&&(e={NOT:{HAS:"alert"}}),this.mapImp.setVisibilityFilter(e)}else this.resetMapFilter()},alertSelected:function(t){this.mapImp&&(t.key==="alert"?t.value?this.mapFilters.alert.with=!0:this.mapFilters.alert.with=!1:t.key==="withoutAlert"&&(t.value?this.mapFilters.alert.without=!0:this.mapFilters.alert.without=!1),this.resetMapFilter())},checkAllAlerts:function(t){this.mapImp&&(t.value?(this.mapFilters.alert.without=!0,this.mapFilters.alert.with=!0):(this.mapFilters.alert.without=!1,this.mapFilters.alert.with=!1),this.resetMapFilter())},systemSelected:function(t){this.mapImp&&this.mapImp.enableSystem(t.key,t.value)},checkAllSystems:function(t){this.mapImp&&this.systems[0].children.forEach(e=>this.mapImp.enableSystem(e.label,t))},ftuSelected:function(t){this.searchAndShowResult(t,!0)},layersSelected:function(t){this.mapImp&&this.mapImp.enableLayer(t.key,t.value)},checkAllLayers:function(t){this.mapImp&&t.keys.forEach(e=>this.mapImp.enableLayer(e,t.value))},taxonsSelected:function(t){this.mapImp&&this.mapImp.enableConnectivityByTaxonIds(t.key,t.value)},taxonMouseEnterEmitted:function(t){if(this.mapImp)if(t.value){let e=this.mapImp.taxonFeatureIds(t.key);this.mapImp.enableConnectivityByTaxonIds(t.key,t.value),this.mapImp.zoomToGeoJSONFeatures(e,{noZoomIn:!0})}else this.mapImp.selectGeoJSONFeatures("-1"),t.selections.forEach(e=>{let r=t.checked.includes(e.taxon);this.mapImp.enableConnectivityByTaxonIds(e.taxon,r)})},checkAllTaxons:function(t){this.mapImp&&t.keys.forEach(e=>this.mapImp.enableConnectivityByTaxonIds(e,t.value))},pathwaysSelected:function(t){this.mapImp&&this.mapImp.enablePath(t.key,t.value)},checkAllPathways:function(t){this.mapImp&&t.keys.forEach(e=>this.mapImp.enablePath(e,t.value))},enablePanZoomEvents:function(t){this.mapImp.enablePanZoomEvents(t)},annotationEventCallback:function(t,e){if(e.type==="aborted")this.featureAnnotationSubmitted?this.featureAnnotationSubmitted=!1:this.rollbackAnnotationEvent();else if(e.type==="modeChanged")e.feature.mode==="direct_select"&&(this.doubleClickedFeature=!0);else if(e.type==="selectionChanged"){if(this.selectedDrawnFeature=e.feature.features.length===0?void 0:e.feature.features[0],t.feature.feature=this.selectedDrawnFeature,!this.activeDrawTool&&(this.connectionEntry={},this.selectedDrawnFeature)){const r=this.existDrawnFeatures.find(n=>n.id===this.selectedDrawnFeature.id);r&&r.connection&&(this.connectionEntry=r.connection),this.annotationDrawModeEvent(t)}}else{if(e.type==="created"||e.type==="updated"){e.type==="updated"&&e.feature.action&&(e.positionUpdated=e.feature.action==="move");const r=this.mapImp.refreshAnnotationFeatureGeometry(e.feature);t.feature.feature=r}e.type==="created"?this.drawnCreatedEvent=t:this.checkAndCreatePopups(t)}},eventCallback:function(){return(t,e,...r)=>{if(t==="annotation"){const n={feature:e,userData:r,eventType:t};this.annotationEventCallback(n,e)}else if(t!=="pan-zoom"){const n=e.label,i=[e.models],o=this.entry,a=this.biologicalSex;let s;e.taxons&&(typeof e.taxons!="object"?s=JSON.parse(e.taxons):s=e.taxons);const u={dataset:e.dataset,biologicalSex:a,taxonomy:o,resource:i,label:n,feature:e,userData:r,eventType:t,provenanceTaxonomy:s};if(t==="click"){if(this.featuresAlert=e.alert,this.viewingMode==="Neuron Connection")this.highlightConnectedPaths([e.models]);else if(this.currentActive=e.models?e.models:"",this.activeDrawTool&&!this.isValidDrawnCreated){const d=e.featureId||this.existDrawnFeatures.find(f=>f.id===e.id);if(this.activeDrawTool==="LineString"&&d){const f=e.featureId?e.featureId:e.id,T=e.label?e.label:`Feature ${e.id}`;this.connectionEntry[` ${f}`]=Object.assign({label:T},Object.fromEntries(Object.entries(e).filter(([Q])=>["featureId","models"].includes(Q)).map(([Q,_])=>[Q==="featureId"?"id":Q,_])))}}}else t==="mouseenter"&&this.viewingMode!=="Neuron Connection"&&(this.currentHover=e.models?e.models:"");e&&e.type!=="marker"&&t==="click"&&this.viewingMode!=="Neuron Connection"&&!this.activeDrawTool&&this.checkAndCreatePopups(u),this.$emit("resource-selected",u)}else this.$emit("pan-zoom-callback",e)}},changeViewingMode:function(t){t&&(this.viewingMode=t),this.closeTooltip()},checkAndCreatePopups:async function(t){if(this.viewingMode==="Annotation")t.feature?(this.annotationEntry={...t.feature,resourceId:this.serverURL},t.feature.featureId&&t.feature.models?this.displayTooltip(t.feature.models):t.feature.feature&&(this.activeDrawTool||this.activeDrawMode||Object.keys(this.connectionEntry).length>0?(this.featureAnnotationSubmitted=!1,this.annotationEntry.featureId=t.feature.feature.id,this.activeDrawTool&&this.createConnectivityBody(),this.displayTooltip(t.feature.feature.id,Dzt(t.feature.feature.geometry))):this.rollbackAnnotationEvent())):this.annotation={};else{let e=await 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1729
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e=this.mapImp.taxonFeatureIds(t.key);this.mapImp.enableConnectivityByTaxonIds(t.key,t.value),this.mapImp.zoomToGeoJSONFeatures(e,{noZoomIn:!0})}else this.mapImp.selectGeoJSONFeatures("-1"),t.selections.forEach(e=>{let r=t.checked.includes(e.taxon);this.mapImp.enableConnectivityByTaxonIds(e.taxon,r)})},checkAllTaxons:function(t){this.mapImp&&t.keys.forEach(e=>this.mapImp.enableConnectivityByTaxonIds(e,t.value))},pathwaysSelected:function(t){this.mapImp&&this.mapImp.enablePath(t.key,t.value)},checkAllPathways:function(t){this.mapImp&&t.keys.forEach(e=>this.mapImp.enablePath(e,t.value))},enablePanZoomEvents:function(t){this.mapImp.enablePanZoomEvents(t)},annotationEventCallback:function(t,e){if(e.type==="aborted")this.featureAnnotationSubmitted?this.featureAnnotationSubmitted=!1:this.rollbackAnnotationEvent();else if(e.type==="modeChanged")e.feature.mode==="direct_select"&&(this.doubleClickedFeature=!0);else if(e.type==="selectionChanged"){if(this.selectedDrawnFeature=e.feature.features.length===0?void 0:e.feature.features[0],t.feature.feature=this.selectedDrawnFeature,!this.activeDrawTool&&(this.connectionEntry={},this.selectedDrawnFeature)){const r=this.existDrawnFeatures.find(n=>n.id===this.selectedDrawnFeature.id);r&&r.connection&&(this.connectionEntry=r.connection),this.annotationDrawModeEvent(t)}}else{if(e.type==="created"||e.type==="updated"){e.type==="updated"&&e.feature.action&&(e.positionUpdated=e.feature.action==="move");const r=this.mapImp.refreshAnnotationFeatureGeometry(e.feature);t.feature.feature=r}e.type==="created"?this.drawnCreatedEvent=t:this.checkAndCreatePopups(t)}},eventCallback:function(){return(t,e,...r)=>{if(t==="annotation"){const n={feature:e,userData:r,eventType:t};this.annotationEventCallback(n,e)}else if(t!=="pan-zoom"){const n=e.label,i=[e.models],o=this.entry,a=this.biologicalSex;let s;e.taxons&&(typeof e.taxons!="object"?s=JSON.parse(e.taxons):s=e.taxons);const u={dataset:e.dataset,biologicalSex:a,taxonomy:o,resource:i,label:n,feature:e,userData:r,eventType:t,provenanceTaxonomy:s};if(t==="click"){if(this.featuresAlert=e.alert,this.viewingMode==="Neuron Connection")this.highlightConnectedPaths([e.models]);else if(this.currentActive=e.models?e.models:"",this.activeDrawTool&&!this.isValidDrawnCreated){const d=e.featureId||this.existDrawnFeatures.find(f=>f.id===e.id);if(this.activeDrawTool==="LineString"&&d){const f=e.featureId?e.featureId:e.id,T=e.label?e.label:`Feature ${e.id}`;this.connectionEntry[` ${f}`]=Object.assign({label:T},Object.fromEntries(Object.entries(e).filter(([Q])=>["featureId","models"].includes(Q)).map(([Q,_])=>[Q==="featureId"?"id":Q,_])))}}}else t==="mouseenter"&&this.viewingMode!=="Neuron Connection"&&(this.currentHover=e.models?e.models:"");e&&e.type!=="marker"&&t==="click"&&this.viewingMode!=="Neuron 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this.flatmapQueries.retrieveFlatmapKnowledgeForEvent(t);(e[0]||e[1]||t.feature.hyperlinks&&t.feature.hyperlinks.length>0)&&(this.resourceForTooltip=t.resource[0],t.resourceForTooltip=this.resourceForTooltip,this.createTooltipFromNeuronCuration(t))}},popUpCssHacks:function(){const t=document.querySelector(".flatmap-tooltip-popup"),e=document.querySelector(".maplibregl-popup-close-button");t&&(t.style.display="none"),e.style.display="block",this.$refs.tooltip.$el.style.display="flex",e.onclick=()=>{this.$emit("connectivity-info-close"),t&&(t.style.display="block")}},closeTooltip:function(){this.$refs.tooltip.$el.style.display="none",document.querySelectorAll(".maplibregl-popup").forEach(t=>{t.style.display="none"})},createTooltipFromNeuronCuration:async function(t){this.tooltipEntry=await this.flatmapQueries.createTooltipData(t),this.displayTooltip(t.resource[0])},showPopup:function(t,e,r){let 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