@abi-software/flatmapvuer 1.17.0 → 1.17.1-demo.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +28 -6
- package/cypress.config.js +19 -19
- package/dist/flatmapvuer.js +2687 -3269
- package/dist/flatmapvuer.umd.cjs +10 -10
- package/dist/index.html +9 -6
- package/dist/style.css +1 -1
- package/eslint.config.js +43 -9
- package/package.json +7 -1
- package/public/index.html +9 -6
- package/reporter-config.json +1 -1
- package/src/App.vue +57 -89
- package/src/assets/_variables.scss +12 -10
- package/src/components/EventBus.js +3 -3
- package/src/components/FlatmapError.vue +38 -38
- package/src/components/FlatmapVuer.vue +891 -945
- package/src/components/MultiFlatmapVuer.vue +257 -158
- package/src/components/SelectionsGroup.vue +66 -82
- package/src/components/index.js +2 -2
- package/src/components/legends/DynamicLegends.vue +5 -10
- package/src/components/legends/LegendItem.vue +32 -35
- package/src/components/legends/SvgLegends.vue +1 -1
- package/src/components/utilities.js +3 -7
- package/src/components.d.ts +1 -0
- package/src/icons/flatmap-marker.js +1 -1
- package/src/icons/mapicon-species-style.css +10 -8
- package/src/icons/yellowstar.js +1 -1
- package/src/main.js +12 -14
- package/src/services/flatmapKnowledge.js +7 -11
- package/src/services/flatmapQueries.js +282 -279
- package/src/services/somaLocationMarkers.js +125 -0
- package/src/store/index.js +7 -7
- package/vite.config.js +33 -34
- package/vite.static-build.js +4 -4
- package/vuese-generator.js +47 -56
package/eslint.config.js
CHANGED
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@@ -1,23 +1,57 @@
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import js from
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import
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import
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import js from '@eslint/js';
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import { includeIgnoreFile } from 'eslint/config';
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import prettier from 'eslint-plugin-prettier';
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import prettierConfig from 'eslint-config-prettier';
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import cypress from 'eslint-plugin-cypress';
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import vue from 'eslint-plugin-vue';
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import globals from 'globals';
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import { fileURLToPath } from 'node:url';
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const gitignorePath = fileURLToPath(new URL('.gitignore', import.meta.url));
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export default [
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includeIgnoreFile(gitignorePath, { gitignoreResolution: true }),
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{
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ignores: [
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ignores: ['dist/**', 'docs/.vitepress/**', 'docs/components/**'],
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},
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js.configs.recommended,
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...vue.configs[
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...vue.configs['flat/essential'],
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prettierConfig,
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{
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...cypress.configs.recommended,
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files: ['cypress/**/*.js'],
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},
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{
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files: [
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files: ['**/*.{js,vue}'],
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plugins: {
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prettier,
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},
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languageOptions: {
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ecmaVersion:
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sourceType:
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ecmaVersion: 'latest',
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sourceType: 'module',
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globals: {
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...globals.node,
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...globals.browser,
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},
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},
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rules: {
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rules: {
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'prettier/prettier': [
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'error',
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{
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singleQuote: true,
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trailingComma: 'all',
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},
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],
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'arrow-body-style': 'off',
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'prefer-arrow-callback': 'off',
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'no-unused-vars': [
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'error',
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{
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varsIgnorePattern: '^_',
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argsIgnorePattern: '^_',
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caughtErrorsIgnorePattern: '^_',
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},
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],
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},
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},
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];
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package/package.json
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@@ -1,6 +1,6 @@
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{
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"name": "@abi-software/flatmapvuer",
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"version": "1.17.
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"version": "1.17.1-demo.1",
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"license": "Apache-2.0",
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"engines": {
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"node": "^24.20.0"
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"build-bundle": "vite build",
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"build-static": "vite build -c vite.static-build.js",
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"lint": "eslint .",
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"format": "prettier --write .",
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"format:check": "prettier --check .",
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"cypress:open": "cypress open",
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"cypress:component": "cypress run --component",
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"cypress:record": "cypress run --component --record",
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"cypress-visual-regression": "^6.0.0",
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"cypress-wait-until": "^3.0.2",
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"eslint": "^10.9.1",
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"eslint-config-prettier": "^10.1.8",
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"eslint-plugin-prettier": "^5.5.6",
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"eslint-plugin-cypress": "^7.0.0",
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"eslint-plugin-vue": "^10.10.0",
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"globals": "^17.11.0",
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"mochawesome": "^8.0.1",
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"prettier": "3.9.6",
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"sass": "^1.103.1",
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"unplugin-auto-import": "^21.1.0",
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"vite": "^8.2.1",
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"vitepress": "^1.6.4",
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"vue-docgen-api": "^4.79.2"
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package/public/index.html
CHANGED
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<!
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<!doctype html>
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<html lang="en">
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<head>
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<meta charset="utf-8"
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<meta http-equiv="X-UA-Compatible" content="IE=edge"
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<meta name="viewport" content="width=device-width,initial-scale=1.0"
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<link rel="icon" href="<%= BASE_URL %>favicon.ico"
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<meta charset="utf-8" />
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<meta http-equiv="X-UA-Compatible" content="IE=edge" />
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<meta name="viewport" content="width=device-width,initial-scale=1.0" />
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<link rel="icon" href="<%= BASE_URL %>favicon.ico" />
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<title>flatmapvuer</title>
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</head>
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<body>
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<noscript>
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<strong>
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<strong>
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We're sorry but scaffoldvuer doesn't work properly without JavaScript enabled. Please enable
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it to continue.
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</strong>
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</noscript>
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<div id="app"></div>
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<!-- built files will be auto injected -->
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package/reporter-config.json
CHANGED
package/src/App.vue
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<div class="options-container">
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<el-row :gutter="20">
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<el-col :span="8">
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<el-button @click="helpMode = !helpMode" size="small"
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>Help Mode</el-button
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>
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<el-button @click="helpMode = !helpMode" size="small">Help Mode</el-button>
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</el-col>
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<el-col :span="8">
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<el-button @click="saveSettings()" size="small"
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>Save Settings</el-button
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>
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<el-button @click="saveSettings()" size="small">Save Settings</el-button>
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</el-col>
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<el-col :span="8">
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<el-button
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size="small"
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>Restore Settings</el-button
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>
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<el-button :disabled="mapSettings.length === 0" @click="restoreSettings()" size="small">
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Restore Settings
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</el-button>
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</el-col>
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</el-row>
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<el-row>
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<el-col>
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<el-switch
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v-model="disableUI"
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active-text="Disable UI"
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>
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<el-switch v-model="disableUI" active-text="Disable UI"></el-switch>
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</el-col>
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</el-row>
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<el-row>
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@select="search"
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popper-class="autocomplete-popper"
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:teleported="false"
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>
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></el-autocomplete>
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</el-col>
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</el-row>
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</div>
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<template #reference>
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<el-button class="options-button" :icon="ElIconSetting"
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<el-button class="options-button" :icon="ElIconSetting">Options</el-button>
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</template>
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</template>
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<script>
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import { AnnotationService } from '@abi-software/sparc-annotation'
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import { AnnotationService } from '@abi-software/sparc-annotation';
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import { markRaw, shallowRef } from 'vue';
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import { Setting as ElIconSetting } from '@element-plus/icons-vue'
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import
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ElPopover as Popover,
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ElRow as Row,
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} from 'element-plus'
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import './icons/mapicon-species-style.css'
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import MultiFlatmapVuer from './components/MultiFlatmapVuer.vue'
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import { HelpModeDialog } from '@abi-software/map-utilities'
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import '@abi-software/map-utilities/dist/style.css'
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import { Setting as ElIconSetting } from '@element-plus/icons-vue';
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import './icons/mapicon-species-style.css';
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import MultiFlatmapVuer from './components/MultiFlatmapVuer.vue';
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import { HelpModeDialog } from '@abi-software/map-utilities';
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import '@abi-software/map-utilities/dist/style.css';
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export default {
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name: 'app',
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components: {
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Autocomplete,
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Button,
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Col,
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ElIconSetting,
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Popover,
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Row,
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MultiFlatmapVuer,
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HelpModeDialog,
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},
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methods: {
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saveSettings: function () {
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this.mapSettings.push(this.$refs.multi.getState())
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this.mapSettings.push(this.$refs.multi.getState());
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},
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restoreSettings: function () {
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if (this.mapSettings.length > 0)
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this.$refs.multi.setState(this.mapSettings.pop())
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if (this.mapSettings.length > 0) this.$refs.multi.setState(this.mapSettings.pop());
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},
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FlatmapSelected: function (resource) {
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if (resource.eventType === 'click') {
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if (this.consoleOn) console.log('resource', resource);
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// Show marker on centreline of right vagus X nerve trunk
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const { kind, models, location } = resource.feature;
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if (window.flatmapImp && models && location && kind === 'centreline') {
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window.flatmapImp.clearMarkers();
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window.flatmapImp.addMarker(models, {
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location: location
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location: location,
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});
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}
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}
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if (this.consoleOn) console.log('pathway-selection-changed', data);
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},
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FlatmapReady: function (component) {
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if (this.consoleOn) console.log(component)
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let taxon = component.mapImp.describes
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let id = component.mapImp.addMarker('UBERON:0000948')
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window.flatmapImp = component.mapImp
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component.enablePanZoomEvents(true)
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if (this.consoleOn) console.log(component);
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let taxon = component.mapImp.describes;
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let id = component.mapImp.addMarker('UBERON:0000948');
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window.flatmapImp = component.mapImp;
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component.enablePanZoomEvents(true);
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//component.showPathwaysDrawer(false);
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if (this.consoleOn) console.log(taxon, id)
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if (this.consoleOn) console.log(taxon, id);
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//component.searchAndShowResult("heart");
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// component.changeViewingMode('Annotation')
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},
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panZoomcallback: function (payload) {
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this.payload = payload
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this.payload = payload;
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},
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openMap: function (map) {
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if (this.consoleOn) console.log(map)
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if (this.consoleOn) console.log(map);
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},
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fetchSuggestions: function (term, cb) {
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if (term === '') {
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cb([])
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cb([]);
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} else {
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const suggestions = []
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const results = this.$refs.multi
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.getCurrentFlatmap()
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.searchSuggestions(term)
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const suggestions = [];
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const results = this.$refs.multi.getCurrentFlatmap().searchSuggestions(term);
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const featureIds = results.__featureIds || results.featureIds;
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featureIds.forEach((id) => {
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const annotation = this.$refs.multi
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const unique = new Set(suggestions)
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suggestions.length = 0
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const annotation = this.$refs.multi.getCurrentFlatmap().mapImp.annotation(id);
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if (annotation && annotation.label) suggestions.push(annotation.label);
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});
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const unique = new Set(suggestions);
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suggestions.length = 0;
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for (const item of unique) {
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suggestions.push({ value: '"' + item + '"' })
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suggestions.push({ value: '"' + item + '"' });
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Vagus: {
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taxo: 'UBERON:0001759',
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uuid:
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uuid: '0ea568ec-538d-52f3-a8e7-0437d844e1cf',
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annotator: markRaw(
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annotator: markRaw(
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new AnnotationService(`https://mapcore-demo.org/devel/flatmap/v4/annotator`),
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),
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{
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{
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]
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}
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],
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};
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},
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mounted: function () {
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this.multiflatmapRef = this.$refs.multi;
|
|
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|
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}
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}
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};
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</script>
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<style lang="scss">
|
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|
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}
|
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|
|
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|
.options-button {
|
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|
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z-index:100;
|
|
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|
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z-index: 100;
|
|
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|
position: absolute;
|
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|
left: 50%;
|
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transform: translateX(-50%);
|
|
@@ -1,15 +1,15 @@
|
|
|
1
1
|
// Primary colors
|
|
2
|
-
$purple: #
|
|
3
|
-
$darkBlue: #
|
|
2
|
+
$purple: #8300bf;
|
|
3
|
+
$darkBlue: #24245b;
|
|
4
4
|
$grey: #303133;
|
|
5
5
|
|
|
6
6
|
// Secondary colors
|
|
7
|
-
$lightPurple: #
|
|
8
|
-
$blue: #
|
|
7
|
+
$lightPurple: #bc00fc;
|
|
8
|
+
$blue: #0026ff;
|
|
9
9
|
|
|
10
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|
// Status colors
|
|
11
11
|
$success: #5e9f69;
|
|
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|
-
$warning: #
|
|
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|
+
$warning: #ff8400;
|
|
13
13
|
$danger: #b51d09;
|
|
14
14
|
|
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|
// Text colors
|
|
@@ -18,12 +18,12 @@ $mediumGrey: #606266;
|
|
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|
$lightGrey: #909399;
|
|
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19
|
|
|
20
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|
// Line colors
|
|
21
|
-
$lineColor1: #
|
|
22
|
-
$lineColor2: #
|
|
21
|
+
$lineColor1: #dcdfe6;
|
|
22
|
+
$lineColor2: #e4e7ed;
|
|
23
23
|
|
|
24
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|
// Background colors
|
|
25
|
-
$background: #
|
|
26
|
-
$cochlear: #
|
|
25
|
+
$background: #f5f7fa;
|
|
26
|
+
$cochlear: #ffffff;
|
|
27
27
|
|
|
28
28
|
//Search box colors
|
|
29
29
|
$darkGrey: #606266;
|
|
@@ -33,7 +33,9 @@ $app-secondary-color: $darkBlue !default;
|
|
|
33
33
|
$text-color: $grey !default;
|
|
34
34
|
$input-text: $grey !default;
|
|
35
35
|
|
|
36
|
-
$system-font:
|
|
36
|
+
$system-font:
|
|
37
|
+
-apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, Oxygen-Sans, Ubuntu, Cantarell,
|
|
38
|
+
'Helvetica Neue', sans-serif !important;
|
|
37
39
|
$font-family: 'Asap', sans-serif;
|
|
38
40
|
|
|
39
41
|
// Viewport Sizes
|
|
@@ -1,3 +1,3 @@
|
|
|
1
|
-
import mitt from 'mitt'
|
|
2
|
-
const EventBus = new mitt()
|
|
3
|
-
export default EventBus
|
|
1
|
+
import mitt from 'mitt';
|
|
2
|
+
const EventBus = new mitt();
|
|
3
|
+
export default EventBus;
|
|
@@ -35,50 +35,50 @@ export default {
|
|
|
35
35
|
default: () => ({}),
|
|
36
36
|
},
|
|
37
37
|
},
|
|
38
|
-
}
|
|
38
|
+
};
|
|
39
39
|
</script>
|
|
40
40
|
|
|
41
41
|
<style lang="scss" scoped>
|
|
42
|
-
|
|
43
|
-
|
|
44
|
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|
|
45
|
-
|
|
46
|
-
|
|
47
|
-
|
|
48
|
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|
|
49
|
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|
|
50
|
-
|
|
51
|
-
|
|
52
|
-
|
|
53
|
-
|
|
42
|
+
.flatmap-error {
|
|
43
|
+
width: 100%;
|
|
44
|
+
height: 100%;
|
|
45
|
+
position: absolute;
|
|
46
|
+
top: 0;
|
|
47
|
+
left: 0;
|
|
48
|
+
display: flex;
|
|
49
|
+
justify-content: center;
|
|
50
|
+
align-items: center;
|
|
51
|
+
flex-direction: column;
|
|
52
|
+
gap: 1rem;
|
|
53
|
+
}
|
|
54
54
|
|
|
55
|
-
|
|
56
|
-
|
|
57
|
-
|
|
58
|
-
|
|
55
|
+
.flatmap-error-title {
|
|
56
|
+
font-size: 18px;
|
|
57
|
+
text-align: center;
|
|
58
|
+
}
|
|
59
59
|
|
|
60
|
-
|
|
61
|
-
|
|
62
|
-
|
|
63
|
-
|
|
64
|
-
|
|
65
|
-
|
|
66
|
-
|
|
67
|
-
|
|
68
|
-
|
|
69
|
-
|
|
70
|
-
|
|
60
|
+
.flatmap-error-message {
|
|
61
|
+
text-align: left;
|
|
62
|
+
display: flex;
|
|
63
|
+
flex-direction: column;
|
|
64
|
+
gap: 0.5rem;
|
|
65
|
+
padding: 1rem;
|
|
66
|
+
line-height: 20px;
|
|
67
|
+
border: 1px solid var(--el-border-color);
|
|
68
|
+
border-radius: var(--el-border-radius-base);
|
|
69
|
+
max-width: 500px;
|
|
70
|
+
}
|
|
71
71
|
|
|
72
|
-
|
|
73
|
-
|
|
72
|
+
.el-button--primary.button {
|
|
73
|
+
font-family: inherit;
|
|
74
74
|
|
|
75
|
-
|
|
76
|
-
|
|
77
|
-
|
|
78
|
-
|
|
79
|
-
|
|
80
|
-
|
|
81
|
-
|
|
82
|
-
}
|
|
75
|
+
&:hover,
|
|
76
|
+
&:active,
|
|
77
|
+
&:focus {
|
|
78
|
+
background: $app-primary-color;
|
|
79
|
+
border-color: $app-primary-color;
|
|
80
|
+
box-shadow: 0px 0px 2px 0px rgba(131, 0, 191, 0.5);
|
|
81
|
+
color: #fff;
|
|
83
82
|
}
|
|
83
|
+
}
|
|
84
84
|
</style>
|