@abi-software/flatmapvuer 1.15.0 → 1.16.0

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Files changed (11) hide show
  1. package/dist/flatmapvuer.js +6 -3
  2. package/dist/flatmapvuer.umd.cjs +10 -10
  3. package/dist/style.css +1 -1
  4. package/package.json +11 -5
  5. package/src/assets/fonts.scss +2 -0
  6. package/src/assets/styles.scss +0 -2
  7. package/src/components/FlatmapVuer.vue +2 -2
  8. package/src/components/MultiFlatmapVuer.vue +3 -1
  9. package/src/components/index.js +1 -0
  10. package/src/main.js +1 -0
  11. package/vite.config.js +12 -4
package/dist/flatmapvuer.umd.cjs CHANGED
@@ -1,11 +1,11 @@
1
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Kg(e,t.provenanceTaxonomy);n.length&&n.forEach(e=>{let{label:t}=e;r.push(t)})}catch(e){console.log(e)}}return{destinations:this.destinations,origins:this.origins,components:this.components,destinationsWithDatasets:Wg(this.destinationsWithDatasets),originsWithDatasets:Wg(this.originsWithDatasets),componentsWithDatasets:Wg(this.componentsWithDatasets),destinationsCombinations:this.destinationsCombinations,originsCombinations:this.originsCombinations,componentsCombinations:this.componentsCombinations,hasSingleConnectivityList:this.singleConnectivityList.length>0,title:t.label,featureId:t.resource,hyperlinks:n,provenanceTaxonomy:t.provenanceTaxonomy,provenanceTaxonomyLabel:r,connectivitySource:this.connectivitySource,noMapConnectivity:this.noMapConnectivity}},this.updateTooltipData=function(e){return{...e,origins:this.origins,originsWithDatasets:Wg(this.originsWithDatasets),components:this.components,componentsWithDatasets:Wg(this.componentsWithDatasets),destinations:this.destinations,destinationsWithDatasets:Wg(this.destinationsWithDatasets),destinationsCombinations:this.destinationsCombinations,originsCombinations:this.originsCombinations,componentsCombinations:this.componentsCombinations,connectivitySource:this.connectivitySource,noMapConnectivity:this.noMapConnectivity}},this.createComponentsLabelList=function(e,t){let n=[];return e.forEach(e=>{n.push(this.createLabelFromNeuralNode(e[0]),t),e.length===2&&n.push(this.createLabelFromNeuralNode(e[1]),t)}),n},this.createLabelLookup=function(e,t){return new Promise(async n=>{let r={};this.uberons=[];let i=await Kg(e,t);i.length&&(i.forEach(e=>{let{taxon:t,label:n}=e;r[t]=n,this.uberons.push({id:t,name:n})}),n(r))})},this.buildConnectivitySqlStatement=function(e){let t=`select knowledge from knowledge where entity in (`;if(e.length===1)t+=`'${e[0]}')`;else if(e.length>1)for(let n in e)t+=`'${e[n]}'${n>=e.length-1?`)`:`,`} `;return t},this.buildLabelSqlStatement=function(e){let t=`select entity, label from labels where entity in (`;if(e.length===1)t+=`'${e[0]}')`;else if(e.length>1)for(let n in e)t+=`'${e[n]}'${n>=e.length-1?`)`:`,`} `;return t},this.findAllIdsFromConnectivity=function(e){let t=e.connectivity.flat(),n=[...new Set(t)],r=[];return n.forEach(e=>{Array.isArray(e)?r.push(e.flat()):r.push(e)}),[...new Set(r.flat())]},this.flattenConnectivity=function(e){let t=e.flat(),n=[...new Set(t)],r=[];return n.forEach(e=>{Array.isArray(e)?r.push(e.flat()):r.push(e)}),r.flat()},this.findComponents=function(e,t,n,r){let i=Ug(e.connectivity.flat()),a=[],o=!1;return i.forEach(e=>{o=!1,qg(t,e)&&(o=!0),r&&qg(r,e)&&(o=!0),qg(n,e)&&(o=!0),o||a.push(e)}),a},this.retrieveFlatmapKnowledgeForEvent=async function(e,t){this.controller&&this.controller.abort(),this.controller=new AbortController,this.controller.signal;let n=t.resource;if(this.destinations=[],this.origins=[],this.components=[],this.destinationsWithDatasets=[],this.originsWithDatasets=[],this.componentsWithDatasets=[],this.destinationsCombinations=[],this.originsCombinations=[],this.componentsCombinations=[],this.singleConnectivityList=[],this.rawURLs=[],!n||n.length===0||!n[0])return;let r=await this.queryForConnectivityNew(e,n[0]);return await Promise.all([r])},this.queryForConnectivityNew=async function(e,t,n=`map`,r=!0){let a=/^sckan-(\d{4})/.exec(e.knowledgeSource||``),o=(a?Number(a[1]):0)>=2026,s=e.mapMetadata.uuid,c=this.flatmapAPI;return this.connectivitySource=o?`sckan`:n,o&&(this.singleConnectivityList=await(0,i.querySingleConnectivityList)(c,s,t)),new Promise(n=>{(this.connectivitySource===`map`?this.queryMapConnectivity(e.mapMetadata.uuid,t):e.queryKnowledge(t)).then(i=>{if(this.checkConnectivityExists(i)){this.connectivitySource===`map`&&(this.noMapConnectivity=!1);let t=i;r?this.processConnectivity(e,t).then(e=>{i.references&&(this.rawURLs=[...i.references]),n(e)}):n(t)}else this.connectivitySource===`map`?(this.connectivitySource=`sckan`,this.noMapConnectivity=!0,e.queryKnowledge(t).then(t=>{if(this.checkConnectivityExists(t)){let i=t;r?this.processConnectivity(e,i).then(e=>{t.references&&(this.rawURLs=[...t.references]),n(e)}):n(i)}else n(!1)}).catch(()=>n(!1))):n(!1)}).catch(e=>{e.name===`AbortError`||console.warn(`Unable to get the knowledge for the entity ${t}.`),n(!1)})})},this.queryMapConnectivity=async function(e,t){let n=this.flatmapAPI+`flatmap/${e}/connectivity/${t}`;try{let e=await fetch(n);if(!e.ok)throw Error(`Response status: ${e.status}`);return await e.json()}catch(e){throw Error(e)}},this.queryForConnectivity=function(e,t,n,r=!0){let i={sql:this.buildConnectivitySqlStatement(t)},a={method:`POST`,headers:{"Content-Type":`application/json`},body:JSON.stringify(i),...n?{signal:n}:{}};return new Promise(t=>{fetch(`${this.flatmapAPI}knowledge/query/`,a).then(e=>e.json()).then(n=>{if(this.connectivityExists(n)){let i=JSON.parse(n.values[0][0]);r?this.processConnectivity(e,i).then(e=>{t(e)}):t(i)}else t(!1)}).catch(e=>{e.name===`AbortError`||console.error(`Error:`,e),t(!1)})})},this.checkConnectivityExists=function(e){return e&&e.connectivity?.length},this.connectivityExists=function(e){return!!(e.values&&e.values.length>0&&JSON.parse(e.values[0][0]).connectivity&&JSON.parse(e.values[0][0]).connectivity.length>0)},this.findIfNodeIsSingle=function(e){return e.length===1?(console.error(`Server returns a single node`,e),e[0]):e.length===2&&e[1].length===0&&e[0]},this.createLabelFromNeuralNode=function(e,t){let n=this.findIfNodeIsSingle(e);if(n)return t[n];let r=t[e[0]];return e.length===2&&e[1].length>0&&e[1].forEach(e=>{t[e]==null?r+=`, ${e}`:r+=`, ${t[e]}`}),r},this.flattenAndFindDatasets=function(e,t,n){let r=this.flattenConnectivity(e),i=this.flattenConnectivity(t),a=this.flattenConnectivity(n);this.originsWithDatasets=this.uberons.filter(e=>r.indexOf(e.id)!==-1).sort(Jg),this.componentsWithDatasets=this.uberons.filter(e=>i.indexOf(e.id)!==-1).sort(Jg),this.destinationsWithDatasets=this.uberons.filter(e=>a.indexOf(e.id)!==-1).sort(Jg),this.singleConnectivityList.length>0&&this.singleConnectivityList.forEach(r=>{let{sckanNodeId:i,sckanNodeLabel:a,mapNodeId:o,mapNodeLabel:s}=r;n.find(e=>JSON.stringify(e)===JSON.stringify(i))&&(this.destinationsCombinations.push({sckanId:i,sckanLabel:a,mapId:o,mapLabel:s}),o.forEach((e,t)=>{let n=typeof e==`string`?e:e[0];n&&this.destinationsWithDatasets.push({id:n,name:s.split(`,`)[t]})})),e.find(e=>JSON.stringify(e)===JSON.stringify(i))&&(this.originsCombinations.push({sckanId:i,sckanLabel:a,mapId:o,mapLabel:s}),o.forEach((e,t)=>{let n=typeof e==`string`?e:e[0];n&&this.originsWithDatasets.push({id:n,name:s.split(`,`)[t]})})),t.find(e=>JSON.stringify(e)===JSON.stringify(i))&&(this.componentsCombinations.push({sckanId:i,sckanLabel:a,mapId:o,mapLabel:s}),o.forEach((e,t)=>{let n=typeof e==`string`?e:e[0];n&&this.componentsWithDatasets.push({id:n,name:s.split(`,`)[t]})}))})},this.processConnectivity=function(e,t){return new Promise(n=>{let r=[],i=[],a;t&&t[`node-phenotypes`]?([`ilxtr:hasSomaLocatedIn`].forEach(e=>{e in t[`node-phenotypes`]&&r.push(...t[`node-phenotypes`][e])}),r=Ug(r),[`ilxtr:hasAxonPresynapticElementIn`,`ilxtr:hasAxonSensorySubcellularElementIn`].forEach(e=>{e in t[`node-phenotypes`]&&i.push(...t[`node-phenotypes`][e])}),i=Ug(i)):(i=Ug(t.axons),t.somas&&t.somas.length>0&&r.push(...t.somas),t.dendrites&&t.dendrites.length>0&&r.push(...t.dendrites),r=Ug(r),a=t.somas);let o=this.findComponents(t,i,r,a),s=this.findAllIdsFromConnectivity(t);this.createLabelLookup(e,s).then(e=>{this.origins=r.map(t=>this.createLabelFromNeuralNode(t,e)).sort(Jg),this.components=o.map(t=>this.createLabelFromNeuralNode(t,e)).sort(Jg),this.destinations=i.map(t=>this.createLabelFromNeuralNode(t,e)).sort(Jg),this.flattenAndFindDatasets(r,o,i),n({ids:{dendrites:r,components:o,axons:i},labels:{origins:this.origins,components:this.components,destinations:this.destinations}})})})},this.buildPubmedSqlStatement=function(e){let t=`select distinct publication from publications where entity in (`;if(e.length===1)t+=`'${e[0]}')`;else if(e.length>1)for(let n in e)t+=`'${e[n]}'${n>=e.length-1?`)`:`,`} `;return t},this.buildPubmedSqlStatementForModels=function(e){return`select distinct publication from publications where entity = '${e}'`},this.queryKnowledge=async(e,t)=>{let n=`${this.flatmapAPI}knowledge/query/`,r=await fetch(n,{method:`POST`,headers:{Accept:`application/json`},body:JSON.stringify({sql:e,params:t})});if(!r.ok)throw Error(`Cannot access ${n}`);let i=await r.json();if(`error`in i)throw TypeError(i.error);return i.values}};async function Xg(e){let t=sessionStorage.getItem(`flatmap-knowledge`);if(t){let n=JSON.parse(t).filter(e=>e.references&&e.references.length).filter(t=>t.references.includes(e));if(n.length)return n.map(e=>e.id)}return[]}async function Zg(e,t,n){let r=`select knowledge from knowledge
17
- where source="${Qg(e)}" and
18
- knowledge like "%${t}%" order by source desc`;return(await n.queryKnowledge(r)).map(e=>JSON.parse(e)).map(e=>e.id)}function Qg(e){return $g(e.mapMetadata)}function $g(e){let t=``;if(e?.connectivity){let n=e.connectivity;`knowledge-source`in n?t=n[`knowledge-source`]:`npo`in n&&(t=`${n.npo.release}-npo`)}return t}async function e_(e,t){let n=Qg(e),r=`select knowledge from knowledge
16
+ </div>`,Gg=function(e){return e?[...new Set(e.map(e=>JSON.stringify(e)))].map(e=>JSON.parse(e)):[]},Kg=function(e){if(!e)return[];let t=new Set,n=[];return e.forEach(e=>{let{id:r,name:i}=e,a=`${r.toLowerCase()}:${i.toLowerCase()}`;t.has(a)||(t.add(a),n.push(e))}),n},qg=[],Jg=async function(e,t){let n=t.filter(e=>qg.some(t=>t.taxon===e)),r=qg.filter(e=>n.includes(e.taxon)),i=t.filter(e=>!n.includes(e));if(i.length){let t=await e.queryLabels(i);if(t.length)return t.forEach(e=>{let{entity:t,label:n}=e;n===`Mammalia`&&(n=`Mammalia not otherwise specified`);let i={taxon:t,label:n};r.push(i),qg.push(i)}),r}else return r},Yg=function(e,t){if(!e||!t)return!1;let n=JSON.stringify(e),r=JSON.stringify(t);return n.indexOf(r)!==-1},Xg=(e,t)=>{let n=e.name??e,r=t.name??t,i=n.toUpperCase(),a=r.toUpperCase();return i<a?-1:+(i>a)},Zg=function(){this.initialise=function(e){this.flatmapAPI=e,this.destinations=[],this.origins=[],this.components=[],this.destinationsWithDatasets=[],this.originsWithDatasets=[],this.componentsWithDatasets=[],this.destinationsCombinations=[],this.originsCombinations=[],this.componentsCombinations=[],this.singleConnectivityList=[],this.hasSingleConnectivityList=!1,this.rawURLs=[],this.controller=void 0,this.uberons=[],this.lookUp=[],this.connectivitySource=`map`,this.noMapConnectivity=!1},this.createTooltipData=async function(e,t){let n=[];n=t.feature.hyperlinks&&t.feature.hyperlinks.length>0?t.feature.hyperlinks:this.rawURLs;let r;if(t.provenanceTaxonomy){r=[];try{let n=await Jg(e,t.provenanceTaxonomy);n.length&&n.forEach(e=>{let{label:t}=e;r.push(t)})}catch(e){console.log(e)}}return{destinations:this.destinations,origins:this.origins,components:this.components,destinationsWithDatasets:Kg(this.destinationsWithDatasets),originsWithDatasets:Kg(this.originsWithDatasets),componentsWithDatasets:Kg(this.componentsWithDatasets),destinationsCombinations:this.destinationsCombinations,originsCombinations:this.originsCombinations,componentsCombinations:this.componentsCombinations,hasSingleConnectivityList:this.singleConnectivityList.length>0,title:t.label,featureId:t.resource,hyperlinks:n,provenanceTaxonomy:t.provenanceTaxonomy,provenanceTaxonomyLabel:r,connectivitySource:this.connectivitySource,noMapConnectivity:this.noMapConnectivity}},this.updateTooltipData=function(e){return{...e,origins:this.origins,originsWithDatasets:Kg(this.originsWithDatasets),components:this.components,componentsWithDatasets:Kg(this.componentsWithDatasets),destinations:this.destinations,destinationsWithDatasets:Kg(this.destinationsWithDatasets),destinationsCombinations:this.destinationsCombinations,originsCombinations:this.originsCombinations,componentsCombinations:this.componentsCombinations,connectivitySource:this.connectivitySource,noMapConnectivity:this.noMapConnectivity}},this.createComponentsLabelList=function(e,t){let n=[];return e.forEach(e=>{n.push(this.createLabelFromNeuralNode(e[0]),t),e.length===2&&n.push(this.createLabelFromNeuralNode(e[1]),t)}),n},this.createLabelLookup=function(e,t){return new Promise(async n=>{let r={};this.uberons=[];let i=await Jg(e,t);i.length&&(i.forEach(e=>{let{taxon:t,label:n}=e;r[t]=n,this.uberons.push({id:t,name:n})}),n(r))})},this.buildConnectivitySqlStatement=function(e){let t=`select knowledge from knowledge where entity in (`;if(e.length===1)t+=`'${e[0]}')`;else if(e.length>1)for(let n in e)t+=`'${e[n]}'${n>=e.length-1?`)`:`,`} `;return t},this.buildLabelSqlStatement=function(e){let t=`select entity, label from labels where entity in (`;if(e.length===1)t+=`'${e[0]}')`;else if(e.length>1)for(let n in e)t+=`'${e[n]}'${n>=e.length-1?`)`:`,`} `;return t},this.findAllIdsFromConnectivity=function(e){let t=e.connectivity.flat(),n=[...new Set(t)],r=[];return n.forEach(e=>{Array.isArray(e)?r.push(e.flat()):r.push(e)}),[...new Set(r.flat())]},this.flattenConnectivity=function(e){let t=e.flat(),n=[...new Set(t)],r=[];return n.forEach(e=>{Array.isArray(e)?r.push(e.flat()):r.push(e)}),r.flat()},this.findComponents=function(e,t,n,r){let i=Gg(e.connectivity.flat()),a=[],o=!1;return i.forEach(e=>{o=!1,Yg(t,e)&&(o=!0),r&&Yg(r,e)&&(o=!0),Yg(n,e)&&(o=!0),o||a.push(e)}),a},this.retrieveFlatmapKnowledgeForEvent=async function(e,t){this.controller&&this.controller.abort(),this.controller=new AbortController,this.controller.signal;let n=t.resource;if(this.destinations=[],this.origins=[],this.components=[],this.destinationsWithDatasets=[],this.originsWithDatasets=[],this.componentsWithDatasets=[],this.destinationsCombinations=[],this.originsCombinations=[],this.componentsCombinations=[],this.singleConnectivityList=[],this.rawURLs=[],!n||n.length===0||!n[0])return;let r=await this.queryForConnectivityNew(e,n[0]);return await Promise.all([r])},this.queryForConnectivityNew=async function(e,t,n=`map`,r=!0){let i=/^sckan-(\d{4})/.exec(e.knowledgeSource||``),o=(i?Number(i[1]):0)>=2026,s=e.mapMetadata.uuid,c=this.flatmapAPI;return this.connectivitySource=o?`sckan`:n,o&&(this.singleConnectivityList=await(0,a.querySingleConnectivityList)(c,s,t)),new Promise(n=>{(this.connectivitySource===`map`?this.queryMapConnectivity(e.mapMetadata.uuid,t):e.queryKnowledge(t)).then(i=>{if(this.checkConnectivityExists(i)){this.connectivitySource===`map`&&(this.noMapConnectivity=!1);let t=i;r?this.processConnectivity(e,t).then(e=>{i.references&&(this.rawURLs=[...i.references]),n(e)}):n(t)}else this.connectivitySource===`map`?(this.connectivitySource=`sckan`,this.noMapConnectivity=!0,e.queryKnowledge(t).then(t=>{if(this.checkConnectivityExists(t)){let i=t;r?this.processConnectivity(e,i).then(e=>{t.references&&(this.rawURLs=[...t.references]),n(e)}):n(i)}else n(!1)}).catch(()=>n(!1))):n(!1)}).catch(e=>{e.name===`AbortError`||console.warn(`Unable to get the knowledge for the entity ${t}.`),n(!1)})})},this.queryMapConnectivity=async function(e,t){let n=this.flatmapAPI+`flatmap/${e}/connectivity/${t}`;try{let e=await fetch(n);if(!e.ok)throw Error(`Response status: ${e.status}`);return await e.json()}catch(e){throw Error(e)}},this.queryForConnectivity=function(e,t,n,r=!0){let i={sql:this.buildConnectivitySqlStatement(t)},a={method:`POST`,headers:{"Content-Type":`application/json`},body:JSON.stringify(i),...n?{signal:n}:{}};return new Promise(t=>{fetch(`${this.flatmapAPI}knowledge/query/`,a).then(e=>e.json()).then(n=>{if(this.connectivityExists(n)){let i=JSON.parse(n.values[0][0]);r?this.processConnectivity(e,i).then(e=>{t(e)}):t(i)}else t(!1)}).catch(e=>{e.name===`AbortError`||console.error(`Error:`,e),t(!1)})})},this.checkConnectivityExists=function(e){return e&&e.connectivity?.length},this.connectivityExists=function(e){return!!(e.values&&e.values.length>0&&JSON.parse(e.values[0][0]).connectivity&&JSON.parse(e.values[0][0]).connectivity.length>0)},this.findIfNodeIsSingle=function(e){return e.length===1?(console.error(`Server returns a single node`,e),e[0]):e.length===2&&e[1].length===0&&e[0]},this.createLabelFromNeuralNode=function(e,t){let n=this.findIfNodeIsSingle(e);if(n)return t[n];let r=t[e[0]];return e.length===2&&e[1].length>0&&e[1].forEach(e=>{t[e]==null?r+=`, ${e}`:r+=`, ${t[e]}`}),r},this.flattenAndFindDatasets=function(e,t,n){let r=this.flattenConnectivity(e),i=this.flattenConnectivity(t),a=this.flattenConnectivity(n);this.originsWithDatasets=this.uberons.filter(e=>r.indexOf(e.id)!==-1).sort(Xg),this.componentsWithDatasets=this.uberons.filter(e=>i.indexOf(e.id)!==-1).sort(Xg),this.destinationsWithDatasets=this.uberons.filter(e=>a.indexOf(e.id)!==-1).sort(Xg),this.singleConnectivityList.length>0&&this.singleConnectivityList.forEach(r=>{let{sckanNodeId:i,sckanNodeLabel:a,mapNodeId:o,mapNodeLabel:s}=r;n.find(e=>JSON.stringify(e)===JSON.stringify(i))&&(this.destinationsCombinations.push({sckanId:i,sckanLabel:a,mapId:o,mapLabel:s}),o.forEach((e,t)=>{let n=typeof e==`string`?e:e[0];n&&this.destinationsWithDatasets.push({id:n,name:s.split(`,`)[t]})})),e.find(e=>JSON.stringify(e)===JSON.stringify(i))&&(this.originsCombinations.push({sckanId:i,sckanLabel:a,mapId:o,mapLabel:s}),o.forEach((e,t)=>{let n=typeof e==`string`?e:e[0];n&&this.originsWithDatasets.push({id:n,name:s.split(`,`)[t]})})),t.find(e=>JSON.stringify(e)===JSON.stringify(i))&&(this.componentsCombinations.push({sckanId:i,sckanLabel:a,mapId:o,mapLabel:s}),o.forEach((e,t)=>{let n=typeof e==`string`?e:e[0];n&&this.componentsWithDatasets.push({id:n,name:s.split(`,`)[t]})}))})},this.processConnectivity=function(e,t){return new Promise(n=>{let r=[],i=[],a;t&&t[`node-phenotypes`]?([`ilxtr:hasSomaLocatedIn`].forEach(e=>{e in t[`node-phenotypes`]&&r.push(...t[`node-phenotypes`][e])}),r=Gg(r),[`ilxtr:hasAxonPresynapticElementIn`,`ilxtr:hasAxonSensorySubcellularElementIn`].forEach(e=>{e in t[`node-phenotypes`]&&i.push(...t[`node-phenotypes`][e])}),i=Gg(i)):(i=Gg(t.axons),t.somas&&t.somas.length>0&&r.push(...t.somas),t.dendrites&&t.dendrites.length>0&&r.push(...t.dendrites),r=Gg(r),a=t.somas);let o=this.findComponents(t,i,r,a),s=this.findAllIdsFromConnectivity(t);this.createLabelLookup(e,s).then(e=>{this.origins=r.map(t=>this.createLabelFromNeuralNode(t,e)).sort(Xg),this.components=o.map(t=>this.createLabelFromNeuralNode(t,e)).sort(Xg),this.destinations=i.map(t=>this.createLabelFromNeuralNode(t,e)).sort(Xg),this.flattenAndFindDatasets(r,o,i),n({ids:{dendrites:r,components:o,axons:i},labels:{origins:this.origins,components:this.components,destinations:this.destinations}})})})},this.buildPubmedSqlStatement=function(e){let t=`select distinct publication from publications where entity in (`;if(e.length===1)t+=`'${e[0]}')`;else if(e.length>1)for(let n in e)t+=`'${e[n]}'${n>=e.length-1?`)`:`,`} `;return t},this.buildPubmedSqlStatementForModels=function(e){return`select distinct publication from publications where entity = '${e}'`},this.queryKnowledge=async(e,t)=>{let n=`${this.flatmapAPI}knowledge/query/`,r=await fetch(n,{method:`POST`,headers:{Accept:`application/json`},body:JSON.stringify({sql:e,params:t})});if(!r.ok)throw Error(`Cannot access ${n}`);let i=await r.json();if(`error`in i)throw TypeError(i.error);return i.values}};async function Qg(e){let t=sessionStorage.getItem(`flatmap-knowledge`);if(t){let n=JSON.parse(t).filter(e=>e.references&&e.references.length).filter(t=>t.references.includes(e));if(n.length)return n.map(e=>e.id)}return[]}async function $g(e,t,n){let r=`select knowledge from knowledge
17
+ where source="${e_(e)}" and
18
+ knowledge like "%${t}%" order by source desc`;return(await n.queryKnowledge(r)).map(e=>JSON.parse(e)).map(e=>e.id)}function e_(e){return t_(e.mapMetadata)}function t_(e){let t=``;if(e?.connectivity){let n=e.connectivity;`knowledge-source`in n?t=n[`knowledge-source`]:`npo`in n&&(t=`${n.npo.release}-npo`)}return t}async function n_(e,t){let n=e_(e),r=`select knowledge from knowledge
19
19
  where source="${n}"
20
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e=this.mapImp.map,n=this.mapImp.options.bounds,r=[[n[0],n[1]],[n[2],n[3]]];e.setMaxBounds(null),e.setRenderWorldCopies(!1),this.initMapState=(0,t.markRaw)({initBounds:r})}},resetView:function(){if(this.mapImp){let e=this.mapImp.map,{initBounds:t}=this.initMapState;e.resetNorthPitch({animate:!1}),t&&e.fitBounds(t,{animate:!1}),this.$refs.skcanSelection&&this.$refs.skcanSelection.reset(),this.$refs.layersSelection&&this.$refs.layersSelection.reset(),this.$refs.systemsSelection&&this.$refs.pathwaysSelection.reset(),this.$refs.pathwaysSelection&&this.$refs.pathwaysSelection.reset()}},zoomIn:function(){this.mapImp&&this.mapImp.zoomIn()},zoomOut:function(){this.mapImp&&this.mapImp.zoomOut()},onSelectionsDataChanged:function(e){this.$emit(`pathway-selection-changed`,e)},sckanSelected:function(e){this.mapImp&&this.mapImp.enableSckanPath(e.key,e.value)},checkAllSCKAN:function(e){this.mapImp&&e.keys.forEach(t=>this.mapImp.enableSckanPath(t,e.value))},zoomToFeatures:function(e){this.mapImp&&this.mapImp.zoomToFeatures(e)},retrieveConnectedPaths:async function(e,t={}){if(this.mapImp){let n=[],r=t.target?.length?t.target:[],i=[...this.mapImp.pathModelNodes(e)],a=await 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e=this.mapFilters.alert,t,n={"tile-layer":`pathways`},r={NOT:n};e.with&&!e.without?t={OR:[r,{AND:[n,{HAS:`alert`}]}]}:!e.with&&e.without?t={OR:[r,{AND:[n,{NOT:{HAS:`alert`}}]}]}:!e.with&&!e.without&&(t=r),this.setVisibilityFilter(t)},alertMouseEnterEmitted:function(e){if(this.mapImp){if(e.value){let t,n={"tile-layer":`pathways`},r={NOT:n};(e.key===`alert`||e.key===`withoutAlert`)&&(t={OR:[r,{AND:[n,e.key===`alert`?{HAS:`alert`}:{NOT:{HAS:`alert`}}]}]}),this.setVisibilityFilter(t)}else 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if(t.type===`modeChanged`)t.feature.mode===`direct_select`&&(this.doubleClickedFeature=!0),this.annotationSidebar&&t.feature.mode===`simple_select`&&this.activeDrawMode===`Deleted`&&this.annotationEventCallback({},{type:`aborted`});else if(t.type===`selectionChanged`){if(this.selectedDrawnFeature=t.feature.features.length===0?void 0:t.feature.features[0],e.feature.feature=this.selectedDrawnFeature,!this.activeDrawTool){if(this.connectionEntry={},this.selectedDrawnFeature){let t=this.existDrawnFeatures.find(e=>e.id===this.selectedDrawnFeature.id);t&&t.connection&&(this.connectionEntry=t.connection),this.annotationDrawModeEvent(e)}else this.annotationSidebar&&this.previousEditEvent.type===`updated`&&(this.annotationEntry=[{...this.previousEditEvent,resourceId:this.serverURL}],this.annotationEventCallback({},{type:`aborted`})),this.previousEditEvent={}}}else{if(t.type===`created`||t.type===`updated`){t.type===`updated`&&t.feature.action&&(t.positionUpdated=t.feature.action===`move`);let n=this.mapImp.refreshAnnotationFeatureGeometry(t.feature);e.feature.feature=n}t.type===`created`?this.drawnCreatedEvent=e:this.checkAndCreatePopups([e])}t.type===`updated`&&(this.previousEditEvent=t),this.previousDeletedEvent=t.type===`deleted`?t:{}},getTaxons:function(e){let t;return e.taxons&&(t=typeof e.taxons==`object`?e.taxons:JSON.parse(e.taxons)),t},eventCallback:function(){return(e,t,...n)=>{if(e===`annotation`){let r={feature:t,userData:n,eventType:e};this.annotationEventCallback(r,t)}else if(e===`context-lost`)this.onContextLost();else if(e===`context-restored`)this.onContextRestored();else if(e===`pan-zoom`)this.$emit(`pan-zoom-callback`,t);else{let r=t.label,i=[t.models],a=this.entry,o=this.biologicalSex,s=a_(t.alert),c=this.getTaxons(t),l=[{dataset:t.dataset,biologicalSex:o,taxonomy:a,resource:i,label:r,feature:t,userData:n,eventType:e,provenanceTaxonomy:c,alert:s}];if(e===`mouseenter`&&(this.lastHoveredFeature=t),e===`click`){let r=!t[0];if(!r){l=[];let r=t.mapUUID,i=new 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Set(e)],s=[...r,...t],c=[...this.mapImp.modelFeatureIdList(s),...i];this.mapImp.selectGeoJSONFeatures(c)}},showConnectivitiesByReference:function(e){this.searchConnectivitiesByReference(e).then(e=>{this.mapImp.selectFeatures(e)})},searchConnectivitiesByReference:async function(e){let t=sessionStorage.getItem(`flatmap-knowledge`),n=[];return n=t?await Xg(e):await Zg(this.mapImp,e,this.flatmapQueries),n},getFlatmapKnowledge:function(){let e=[],t=sessionStorage.getItem(`flatmap-knowledge`);return t&&(e=JSON.parse(t)),e},emitConnectivityError:function(e){this.$emit(`connectivity-error`,{data:{errorData:e,errorMessage:f_}})},checkConnectivityTooltipEntry:function(e){return e?.length?e.find(e=>e?.destinations?.length||e?.components?.length)!==void 0:!1},changeConnectivitySource:async function(e){let{entry:t,connectivitySource:n}=e;t.mapId===this.mapImp.id&&(await this.flatmapQueries.queryForConnectivityNew(this.mapImp,t.featureId[0],n),this.tooltipEntry=this.tooltipEntry.map(e=>e.featureId[0]===t.featureId[0]?this.flatmapQueries.updateTooltipData(e):e),this.checkConnectivityTooltipEntry(this.tooltipEntry)&&this.$emit(`connectivity-info-open`,this.tooltipEntry))},checkAndCreatePopups:async function(e,t=!0){if(this.viewingMode===`Annotation`){let t=e.filter(e=>e.feature).map(e=>e.feature);if(t.length>0){if(this.annotationSidebar&&this.previousDeletedEvent.type===`deleted`&&(this.annotationEntry=[{...this.previousDeletedEvent,resourceId:this.serverURL}],this.annotationEventCallback({},{type:`aborted`})),this.annotationEntry=[],t.forEach(e=>{this.annotationEntry.push({...e,resourceId:this.serverURL,featureId:e.featureId?e.featureId:e.feature?.id,offline:this.offlineAnnotationEnabled})}),t[0].feature)this.activeDrawTool||this.activeDrawMode||this.isValidDrawnCreated?(this.featureAnnotationSubmitted=!1,this.activeDrawTool&&this.createConnectivityBody(),this.displayTooltip(t[0].feature.id,p_(t[0].feature.geometry))):this.rollbackAnnotationEvent();else{let e=this.annotationEntry.filter(e=>e.featureId&&e.models).map(e=>e.models);e.length>0&&this.displayTooltip(e)}}else this.annotation={}}else if(this.viewingMode===`Neuron Connection`&&t){let t=e.map(e=>e.resource[0]);if(t.find(e=>!e.startsWith(`ilxtr:`))){let n=Array.isArray(t)?[...t]:[t];n.length===1&&n.push([]);let r=e[0].feature?.featureId,a=this.mapImp.annotations.get(r),o=a?.[`anatomical-nodes`],s=a?.models,c,l=n,u=a?.models;o?.length&&(c=o.find(e=>JSON.parse(e)[0]===s)),c?l=JSON.parse(c):u&&(l=[u,[]]);let d=this.mapImp.knowledgeSource,f=l.flat(1/0),p=[...new Set(f)],m=(await(0,i.fetchLabels)(this.flatmapAPI,p)).reduce((e,t)=>{let n=t[0],r=JSON.parse(t[1]);return e.push({id:n,label:r.label,source:r.source}),e},[]);m.sort((e,t)=>e.id===t.id?e.source===d&&t.source!==d?-1:+(e.source!==d&&t.source===d):e.id.localeCompare(t.id));let h=[];for(let e=0;e<p.length;e++){let t=m.find(t=>t.id===p[e]);t&&h.push(t.label)}let g=i_(h.join(`, `)),_={facet:JSON.stringify(l),facetPropPath:`flatmap.connectivity.source.${this.connectionType.toLowerCase()}`,tagLabel:g,term:this.connectionType};this.connectivityFilters.some(e=>e.facet===_.facet&&e.facetPropPath===_.facetPropPath)||this.connectivityFilters.push(_),this.$emit(`neuron-connection-feature-click`,{filters:this.connectivityFilters,search:``})}else await this.openConnectivityInfo(e)}else await this.openConnectivityInfo(e)},openConnectivityInfo:async function(e){e_(this.mapImp,this.flatmapQueries);let t=[];if(this.tooltipEntry=e.filter(e=>e.resource[0]in this.mapImp.pathways.paths).map(e=>({title:e.label,featureId:e.resource,ready:!1})),this.tooltipEntry.length){this.$emit(`connectivity-info-open`,this.tooltipEntry);for(let n=0;n<e.length;n++)t.push(await this.getKnowledgeTooltip(e[n]));this.tooltipEntry=await Promise.all(t);let n=this.tooltipEntry.map(e=>e.featureId[0]);n.length>0&&this.displayTooltip(n)}},updateConnectivityFilters:function(e){e.length&&(this.connectivityFilters=e.filter(e=>e.facet.toLowerCase()!==`show all`))},resetConnectivityfilters:function(e){this.connectivityFilters=e.length?this.connectivityFilters.filter(t=>e.some(e=>e.facetPropPath===t.facetPropPath&&e.facet!==t.facet)):[]},getKnowledgeTooltip:async function(e){let t=await this.flatmapQueries.retrieveFlatmapKnowledgeForEvent(this.mapImp,e),n=await this.flatmapQueries.createTooltipData(this.mapImp,e);return(t&&t[0]||e.feature.hyperlinks&&e.feature.hyperlinks.length>0)&&(n.featuresAlert=a_(e.alert),n.knowledgeSource=Qg(this.mapImp),n.mapId=this.mapImp.mapMetadata.id,n.mapuuid=this.mapImp.mapMetadata.uuid),n.ready=!0,n},popUpCssHacks:function(){let e=document.querySelector(`.flatmap-tooltip-popup`),t=document.querySelector(`.maplibregl-popup-close-button`);e&&(e.style.display=`none`),t.style.display=`block`,this.$refs.tooltip.$el.style.display=`flex`,t.onclick=()=>{this.$emit(`connectivity-info-close`),e&&(e.style.display=`block`)}},closeTooltip:function(){this.$refs.tooltip&&(this.$refs.tooltip.$el.style.display=`none`),document.querySelectorAll(`.maplibregl-popup`).forEach(e=>{e.style.display=`none`}),this.lastHoveredFeature=null},showPopup:function(e,t,n){let r=n;this.mapImp&&(r?r.className||(r.className=`custom-popup`):r={className:`custom-popup`,positionAtLastClick:!0},this.mapImp.showPopup(e,t,r))},showMarkerPopup:function(e,t,n){this.mapImp&&this.mapImp.showMarkerPopup(e,t,n)},closeMinimap:function(){let e=this.$refs.flatmapContainer.querySelector(`.maplibregl-ctrl-minimap`);this.minimapSmall?(e.classList.add(`enlarge`),e.classList.remove(`shrink`)):(e.classList.add(`shrink`),e.classList.remove(`enlarge`)),this.minimapSmall=!this.minimapSmall},addResizeButtonToMinimap:function(){let e=this.$refs.flatmapContainer.querySelector(`.maplibregl-ctrl-minimap`);e&&(this.$refs.minimapResize&&this.$refs.minimapResize.$el.parentNode&&this.$refs.minimapResize.$el.parentNode.removeChild(this.$refs.minimapResize.$el),e.appendChild(this.$refs.minimapResize.$el),this.minimapResizeShow=!0)},setHelpMode:function(e){let t=this.hoverVisibilities.length,n=t-1,r=this.hoverVisibilities[this.helpModeActiveIndex];if(r){let t=r?.refs,n=r?.ref,i=this.$refs[t||n];if(i){let{parentElement:e,nextElementSibling:t}=i.$el,n=e=>e&&(e.classList.contains(`pathway-container`)||e.classList.contains(`pathway-location`));(n(e)||n(t))&&(this.requiresDrawer?this.drawerOpen=!0:this.helpModeActiveIndex+=1)}else this.helpModeActiveIndex+=1,this.setHelpMode(e)}this.hoverVisibilities[this.helpModeActiveIndex]?.ref===`checkBoxPopover`&&!this.showPathwayFilter&&(this.helpModeActiveIndex+=1,this.setHelpMode(e)),e||(this.helpModeActiveIndex=this.helpModeInitialIndex),this.viewingMode!==`Annotation`&&this.helpModeActiveIndex>9&&(this.helpModeActiveIndex=n),e&&this.helpModeActiveIndex>=n&&this.$emit(`help-mode-last-item`,!0),e&&!this.helpModeDialog?(this.inHelp=!0,this.hoverVisibilities.forEach(e=>{e.value=!0})):e&&this.helpModeDialog&&t>this.helpModeActiveIndex?this.helpModeActiveIndex>-1?(this.closeFlatmapHelpPopup(),setTimeout(()=>{this.inHelp=!1,this.hoverVisibilities.forEach(e=>{e.value=!1}),this.showTooltip(this.helpModeActiveIndex,200)},300)):this.helpModeActiveIndex===-1&&this.openFlatmapHelpPopup():(this.inHelp=!1,this.hoverVisibilities.forEach(e=>{e.value=!1}),this.closeFlatmapHelpPopup())},showTooltip:function(e,t=500){this.inHelp||(clearTimeout(this.tooltipWait[e]),this.tooltipWait[e]=setTimeout(()=>{this.hoverVisibilities[e].value=!0,this.$emit(`shown-tooltip`)},t))},hideTooltip:function(e,t=500){this.inHelp||(clearTimeout(this.tooltipWait[e]),this.tooltipWait[e]=setTimeout(()=>{this.hoverVisibilities[e].value=!1},t))},displayTooltip:function(e,t=void 0){let n,r={className:`flatmapvuer-popover`};if(t)n=e,r.annotationFeatureGeometry=t,this.annotationEntry.length&&(r.annotationEvent={type:this.annotationEntry[0].type,feature:this.annotationEntry[0].feature});else{let t=Array.isArray(e)?e[0]:e;t&&(n=this.mapImp.modelFeatureIds(t)[0]),this.activeDrawTool||(r.positionAtLastClick=!0)}this.connectivityInfoSidebar&&this.tooltipEntry.length&&this.viewingMode!==`Annotation`&&this.checkConnectivityTooltipEntry(this.tooltipEntry)&&this.$emit(`connectivity-info-open`,this.tooltipEntry),this.annotationSidebar&&this.viewingMode===`Annotation`&&this.$emit(`annotation-open`,{annotationEntry:this.annotationEntry,commitCallback:this.commitAnnotationEvent}),n&&!this.disableUI&&(this.viewingMode===`Annotation`&&!this.annotationSidebar||this.viewingMode===`Exploration`&&!this.connectivityInfoSidebar)&&(this.tooltipDisplay=!0,this.$nextTick(()=>{this.mapImp.showPopup(n,this.$refs.tooltip.$el,r),this.popUpCssHacks()}))},moveMap:function(e,t={}){if(this.mapImp){let{offsetX:n=0,offsetY:r=0,zoom:i=4}=t,a=this.mapImp.map,o=this.mapImp.bounds.toArray();this.mapImp.zoomToFeatures(e,{noZoomIn:!0}),this.showPathwaysDrawer(!1),o?.length&&setTimeout(()=>{a.fitBounds(o,{offset:[n,r],zoom:i,animate:!0})})}},openFlatmapHelpPopup:function(){if(this.mapImp){let e=this.mapImp.modelFeatureIds(`UBERON:0000948`);e&&e.length>0&&(this.mapImp.showPopup(e[0],`Click for more information`,{anchor:`top`,className:`flatmap-popup-popper`}),this.$emit(`shown-map-tooltip`))}},closeFlatmapHelpPopup:function(){this.$el.querySelectorAll(`.maplibregl-popup-close-button`).forEach(e=>{e.click()})},getLabels:function(){let e=[];if(this.mapImp){let t=this.mapImp.annotations;for(let n of t.values())n.label&&e.push(n.label);return Array.from(new Set(e))}},getVisibilityState:function(e){[`alertSelection`,`pathwaysSelection`,`taxonSelection`].forEach(t=>{let n=this.$refs[t];n&&(e[t]=n.getState())}),this.$refs.treeControls&&(e.systemsSelection=this.$refs.treeControls.$refs.regionTree.getCheckedKeys().filter(e=>!e.includes(`.`)))},setVisibilityState:function(e){[`alertSelection`,`pathwaysSelection`,`taxonSelection`].forEach(t=>{let n=e[t];if(n){let e=this.$refs[t];e&&e.setState(n)}}),`systemsSelection`in e&&this.$refs.treeControls&&(this.$refs.treeControls.$refs.regionTree.setCheckedKeys(e.systemsSelection),this.systems[0].children.forEach(t=>{this.mapImp.enableSystem(t.key,e.systemsSelection.includes(t.key))}))},getState:function(){if(this.mapImp){let e={entry:this.entry,viewport:this.mapImp.getState()},t=this.mapImp.getIdentifier();return this.biologicalSex?e.biologicalSex=this.biologicalSex:t&&t.biologicalSex&&(e.biologicalSex=t.biologicalSex),t&&t.uuid&&(e.uuid=t.uuid),e.viewingMode=this.viewingMode,e.searchTerm=this.searchTerm,e.flightPath3D=this.flightPath3DRadio,e.colour=this.colourRadio,e.outlines=this.outlinesRadio,e.background=this.currentBackground,this.offlineAnnotationEnabled&&(e.offlineAnnotations=sessionStorage.getItem(`anonymous-annotation`)),this.getVisibilityState(e),e}},setState:function(e){e&&(this.mapImp&&e.entry&&this.entry==e.entry&&(!e.biologicalSex||e.biologicalSex===this.biologicalSex)?this.restoreMapState(e):this.createFlatmap(e),this.setStateRequired=!1)},restoreMapState:function(e){if(e){if(e.viewport&&this.mapImp.setState(e.viewport),e.offlineAnnotations&&sessionStorage.setItem(`anonymous-annotation`,e.offlineAnnotations),e.viewingMode&&this.changeViewingMode(e.viewingMode),`flightPath3D`in e&&this.setFlightPath3D(e.flightPath3D),`colour`in e&&this.setColour(e.colour),`outlines`in e&&this.setOutlines(e.outlines),e.background&&this.backgroundChangeCallback(e.background),e.searchTerm){let t=e.searchTerm;this.searchAndShowResult(t,!0,!0)}this.setVisibilityState(e)}},setFlightPathInfo:function(e){let t=1.6;(e===t||e>t)&&(this.displayFlightPathOption=!0,this.setFlightPath3D(!1))},createFlatmap:function(e){if(!this.mapImp&&!this.loading){this.loading=!0,this.flatmapError=null;let t={taxon:this.entry};this.uuid&&(t.uuid=this.uuid),e?(e.uuid?t={uuid:e.uuid}:e.entry&&(t.taxon=e.entry),e.biologicalSex?t.biologicalSex=e.biologicalSex:t.taxon===`NCBITaxon:9606`&&(t.biologicalSex=`PATO:0000384`)):this.biologicalSex&&(t.biologicalSex=this.biologicalSex),this.mapManagerRef.loadMap(t,this.eventCallback(),{minZoom:this.minZoom,tooltips:this.tooltips,minimap:!1,container:this.$refs.display,tooltipDelay:15}).then(t=>{this.mapImp=t,this.serverURL=this.mapImp.makeServerUrl(``).slice(0,-1);let n=this.mapImp.details.version;this.setFlightPathInfo(n);let r=this._stateToBeSet?this._stateToBeSet:e;this.onFlatmapReady(r),this.$nextTick(()=>this.restoreMapState(r))}).catch(e=>{if(console.error(`Flatmap loading error:`,e),this.flatmapError={},e.message&&e.message.indexOf(`Unknown map`)!==-1?(this.flatmapError.title=`Unknown Map!`,this.flatmapError.messages=Object.keys(t).map(e=>`${e===`uuid`?`UUID`:i_(e)}: ${t[e]}`)):(this.flatmapError.title=`Error Loading Map!`,this.flatmapError.messages=[e.message?e.message:e.toString(),`Please try again later or contact support if the problem persists.`]),this.$parent?.$refs?.multiContainer){let e=this.$parent;this.flatmapError.button={text:`Load Default Map`,callback:()=>{let t=e.initial;e.setSpecies(t,void 0,3)}}}this.loading=!1})}else e&&(this._stateToBeSet={...e},this.mapImp&&!this.loading&&this.restoreMapState(this._stateToBeSet))},computePathControlsMaximumHeight(){let e=this.$refs.display;if(e){let t=getComputedStyle(e),n=parseInt(t.paddingTop)+parseInt(t.paddingBottom),r=e.clientHeight-n;this.pathwaysMaxHeight=r-170}},mapResize:function(){try{this.computePathControlsMaximumHeight(),this.mapImp&&this.mapImp.resize()}catch{console.error(`Map resize error`)}},getFilterSources:function(){let e=[`kind`,`taxons`],t=new Set,n=new Set,r=new Map;for(let i of this.mapImp.annotations.values())if(i.source){`alert`in i?t.add(i.source):n.add(i.source);for(let[t,n]of Object.entries(i))if(e.includes(t)){r.has(t)||r.set(t,new Map);let e=r.get(t),a=t=>{let n=t;e.has(n)||e.set(n,new Set),e.get(n).add(`${i.source}`)};Array.isArray(n)?n.forEach(a):a(n)}}let i={alert:{with:[...t],without:[...n]}};for(let[e,t]of r.entries()){i[e]={};for(let[n,r]of t.entries())i[e][n]=[...r.values()]}return i},getFilterOptions:async function(e,t){let n=t||this.getFlatmapKnowledge(),r=this.pathways;return await(0,i.getFlatmapFilterOptions)(this.flatmapAPI,e,n,r)},onFlatmapReady:function(e){this.sensor=(0,t.markRaw)(new s_.default(this.$refs.display,this.mapResize)),this.mapImp.options?.style===`functional`&&(this.isFC=!0),this.mapImp.setBackgroundOpacity(1),this.backgroundChangeCallback(this.currentBackground),this.pathways=this.mapImp.pathTypes(),this.pathways=this.pathways.filter(e=>e.enabled&&e.type!==`other`),this.processSystems(this.mapImp.getSystems()),this.processTaxon(this.mapImp.taxonIdentifiers,e?e.taxonSelection:void 0),this.containsAlert=`alert`in this.mapImp.featureFilterRanges(),this.flatmapLegends=this.mapImp.flatmapLegend,this.loading=!1,this.computePathControlsMaximumHeight(),this.mapResize(),this.handleMapClick(),this.setInitMapState(),this.displayMinimap&&(this.mapImp.createMinimap({position:`top-right`}),this.addResizeButtonToMinimap()),this.$emit(`ready`,this)},handleMapClick:function(){let e=this.mapImp.map;e&&e.on(`click`,e=>{this.connectivityDataSource||this.$emit(`connectivity-info-close`),this.connectivityDataSource=``})},onContextLost:function(){this.lastViewport=(0,t.markRaw)(this.mapImp.getState()),this.flatmapError={},this.flatmapError.title=`GL context lost!`,this.flatmapError.messages=[`A display issue has occurred due
20
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if(t.type===`modeChanged`)t.feature.mode===`direct_select`&&(this.doubleClickedFeature=!0),this.annotationSidebar&&t.feature.mode===`simple_select`&&this.activeDrawMode===`Deleted`&&this.annotationEventCallback({},{type:`aborted`});else if(t.type===`selectionChanged`){if(this.selectedDrawnFeature=t.feature.features.length===0?void 0:t.feature.features[0],e.feature.feature=this.selectedDrawnFeature,!this.activeDrawTool){if(this.connectionEntry={},this.selectedDrawnFeature){let t=this.existDrawnFeatures.find(e=>e.id===this.selectedDrawnFeature.id);t&&t.connection&&(this.connectionEntry=t.connection),this.annotationDrawModeEvent(e)}else this.annotationSidebar&&this.previousEditEvent.type===`updated`&&(this.annotationEntry=[{...this.previousEditEvent,resourceId:this.serverURL}],this.annotationEventCallback({},{type:`aborted`})),this.previousEditEvent={}}}else{if(t.type===`created`||t.type===`updated`){t.type===`updated`&&t.feature.action&&(t.positionUpdated=t.feature.action===`move`);let n=this.mapImp.refreshAnnotationFeatureGeometry(t.feature);e.feature.feature=n}t.type===`created`?this.drawnCreatedEvent=e:this.checkAndCreatePopups([e])}t.type===`updated`&&(this.previousEditEvent=t),this.previousDeletedEvent=t.type===`deleted`?t:{}},getTaxons:function(e){let t;return e.taxons&&(t=typeof e.taxons==`object`?e.taxons:JSON.parse(e.taxons)),t},eventCallback:function(){return(e,t,...n)=>{if(e===`annotation`){let r={feature:t,userData:n,eventType:e};this.annotationEventCallback(r,t)}else if(e===`context-lost`)this.onContextLost();else if(e===`context-restored`)this.onContextRestored();else if(e===`pan-zoom`)this.$emit(`pan-zoom-callback`,t);else{let r=t.label,i=[t.models],a=this.entry,o=this.biologicalSex,s=s_(t.alert),c=this.getTaxons(t),l=[{dataset:t.dataset,biologicalSex:o,taxonomy:a,resource:i,label:r,feature:t,userData:n,eventType:e,provenanceTaxonomy:c,alert:s}];if(e===`mouseenter`&&(this.lastHoveredFeature=t),e===`click`){let r=!t[0];if(!r){l=[];let r=t.mapUUID,i=new Set;for(let[s,c]of Object.entries(t))if(s!==`mapUUID`){let t=c.featureId,s=c.label,u=[c.models],d=this.getTaxons(c);if(i.has(t))continue;i.add(t),l.push({dataset:c.dataset,biologicalSex:o,taxonomy:a,resource:u,label:s,feature:c,userData:n,eventType:e,provenanceTaxonomy:d,alert:s_(c.alert),mapUUID:r})}}let i=r?t:t[0];if(this.setConnectivityDataSource(this.viewingMode,i),this.viewingMode!==`Neuron Connection`&&(this.currentActive=i.models?i.models:``,this.activeDrawTool&&!this.isValidDrawnCreated)){let e=i.featureId||this.existDrawnFeatures.find(e=>e.id===i.id);if(this.activeDrawTool===`LineString`&&e){let e=i.featureId?i.featureId:i.id,t=i.label?i.label:`Feature ${i.id}`;this.connectionEntry[` ${e}`]=Object.assign({label:t},Object.fromEntries(Object.entries(i).filter(([e])=>[`featureId`,`models`].includes(e)).map(([e,t])=>[e===`featureId`?`id`:e,t])))}}t&&t.type!==`marker`&&!this.activeDrawTool&&this.checkAndCreatePopups(l)}else e===`mouseenter`&&this.viewingMode!==`Neuron Connection`&&(this.currentHover=t.models?t.models:``);this.$emit(`resource-selected`,l)}}},setConnectivityDataSource:function(e,t){this.connectivityDataSource=e===`Exploration`?t.models?.startsWith(`ilxtr:`)?t.models:``:t.featureId||t.id},changeViewingMode:function(e){e&&(this.viewingMode=e),this.manualAbortedOnClose()},removeActiveTooltips:function(){this.mapImp&&this.mapImp.removePopup(),this.$el.querySelectorAll(`.flatmap-tooltip-popup`).forEach(e=>e.remove()),this.lastHoveredFeature=null},createTooltipForConnectivity:function(e,t){let n=document.createElement(`div`);n.classList.add(`flatmap-feature-label`),e.forEach((t,r)=>{let{label:i}=t;if(n.append(o_(i)),r+1<e.length){let e=document.createElement(`hr`);n.appendChild(e)}}),this.mapImp.showPopup(t,n,{className:`custom-popup flatmap-tooltip-popup`,positionAtLastClick:!1,preserveSelection:!0})},showConnectivityTooltips:function(e){let{connectivityInfo:t,data:n}=e,r=[],i=[],a=[],o=[];if(this.lastHoveredFeature=null,t&&t.featureId&&r.push(...t.featureId),this.mapImp){if(n.forEach(e=>{let t=this.mapImp.search(e.id);if(t?.results.length){let n=t?.results[0].featureId;a.push({featureId:n,...e})}else o.push(e)}),a.length){let e=a[0].featureId;this.mapImp.annotations.forEach(t=>{let n=t[`anatomical-nodes`];if(n){let r=n.join(``);a.every(e=>r.indexOf(e.id)!==-1)&&(e=t.featureId,i.push(e))}}),this.createTooltipForConnectivity(a,e)}else this.removeActiveTooltips();o.length&&this.emitConnectivityError(o);let e=r.reduce((e,t)=>{let n=this.mapImp.pathways.paths[t],r=n?n.connectivity:null;if(r){let t=r.flat(1/0);e.push(...t)}return e},[]),t=[...new Set(e)],s=[...r,...t],c=[...this.mapImp.modelFeatureIdList(s),...i];this.mapImp.selectGeoJSONFeatures(c)}},showConnectivitiesByReference:function(e){this.searchConnectivitiesByReference(e).then(e=>{this.mapImp.selectFeatures(e)})},searchConnectivitiesByReference:async function(e){let t=sessionStorage.getItem(`flatmap-knowledge`),n=[];return n=t?await Qg(e):await $g(this.mapImp,e,this.flatmapQueries),n},getFlatmapKnowledge:function(){let e=[],t=sessionStorage.getItem(`flatmap-knowledge`);return t&&(e=JSON.parse(t)),e},emitConnectivityError:function(e){this.$emit(`connectivity-error`,{data:{errorData:e,errorMessage:m_}})},checkConnectivityTooltipEntry:function(e){return e?.length?e.find(e=>e?.destinations?.length||e?.components?.length)!==void 0:!1},changeConnectivitySource:async function(e){let{entry:t,connectivitySource:n}=e;t.mapId===this.mapImp.id&&(await this.flatmapQueries.queryForConnectivityNew(this.mapImp,t.featureId[0],n),this.tooltipEntry=this.tooltipEntry.map(e=>e.featureId[0]===t.featureId[0]?this.flatmapQueries.updateTooltipData(e):e),this.checkConnectivityTooltipEntry(this.tooltipEntry)&&this.$emit(`connectivity-info-open`,this.tooltipEntry))},checkAndCreatePopups:async function(e,t=!0){if(this.viewingMode===`Annotation`){let t=e.filter(e=>e.feature).map(e=>e.feature);if(t.length>0){if(this.annotationSidebar&&this.previousDeletedEvent.type===`deleted`&&(this.annotationEntry=[{...this.previousDeletedEvent,resourceId:this.serverURL}],this.annotationEventCallback({},{type:`aborted`})),this.annotationEntry=[],t.forEach(e=>{this.annotationEntry.push({...e,resourceId:this.serverURL,featureId:e.featureId?e.featureId:e.feature?.id,offline:this.offlineAnnotationEnabled})}),t[0].feature)this.activeDrawTool||this.activeDrawMode||this.isValidDrawnCreated?(this.featureAnnotationSubmitted=!1,this.activeDrawTool&&this.createConnectivityBody(),this.displayTooltip(t[0].feature.id,h_(t[0].feature.geometry))):this.rollbackAnnotationEvent();else{let e=this.annotationEntry.filter(e=>e.featureId&&e.models).map(e=>e.models);e.length>0&&this.displayTooltip(e)}}else this.annotation={}}else if(this.viewingMode===`Neuron Connection`&&t){let t=e.map(e=>e.resource[0]);if(t.find(e=>!e.startsWith(`ilxtr:`))){let n=Array.isArray(t)?[...t]:[t];n.length===1&&n.push([]);let r=e[0].feature?.featureId,i=this.mapImp.annotations.get(r),o=i?.[`anatomical-nodes`],s=i?.models,c,l=n,u=i?.models;o?.length&&(c=o.find(e=>JSON.parse(e)[0]===s)),c?l=JSON.parse(c):u&&(l=[u,[]]);let d=this.mapImp.knowledgeSource,f=l.flat(1/0),p=[...new Set(f)],m=(await(0,a.fetchLabels)(this.flatmapAPI,p)).reduce((e,t)=>{let n=t[0],r=JSON.parse(t[1]);return e.push({id:n,label:r.label,source:r.source}),e},[]);m.sort((e,t)=>e.id===t.id?e.source===d&&t.source!==d?-1:+(e.source!==d&&t.source===d):e.id.localeCompare(t.id));let h=[];for(let e=0;e<p.length;e++){let t=m.find(t=>t.id===p[e]);t&&h.push(t.label)}let g=o_(h.join(`, `)),_={facet:JSON.stringify(l),facetPropPath:`flatmap.connectivity.source.${this.connectionType.toLowerCase()}`,tagLabel:g,term:this.connectionType};this.connectivityFilters.some(e=>e.facet===_.facet&&e.facetPropPath===_.facetPropPath)||this.connectivityFilters.push(_),this.$emit(`neuron-connection-feature-click`,{filters:this.connectivityFilters,search:``})}else await this.openConnectivityInfo(e)}else await this.openConnectivityInfo(e)},openConnectivityInfo:async function(e){n_(this.mapImp,this.flatmapQueries);let t=[];if(this.tooltipEntry=e.filter(e=>e.resource[0]in this.mapImp.pathways.paths).map(e=>({title:e.label,featureId:e.resource,ready:!1})),this.tooltipEntry.length){this.$emit(`connectivity-info-open`,this.tooltipEntry);for(let n=0;n<e.length;n++)t.push(await this.getKnowledgeTooltip(e[n]));this.tooltipEntry=await Promise.all(t);let n=this.tooltipEntry.map(e=>e.featureId[0]);n.length>0&&this.displayTooltip(n)}},updateConnectivityFilters:function(e){e.length&&(this.connectivityFilters=e.filter(e=>e.facet.toLowerCase()!==`show all`))},resetConnectivityfilters:function(e){this.connectivityFilters=e.length?this.connectivityFilters.filter(t=>e.some(e=>e.facetPropPath===t.facetPropPath&&e.facet!==t.facet)):[]},getKnowledgeTooltip:async function(e){let t=await this.flatmapQueries.retrieveFlatmapKnowledgeForEvent(this.mapImp,e),n=await this.flatmapQueries.createTooltipData(this.mapImp,e);return(t&&t[0]||e.feature.hyperlinks&&e.feature.hyperlinks.length>0)&&(n.featuresAlert=s_(e.alert),n.knowledgeSource=e_(this.mapImp),n.mapId=this.mapImp.mapMetadata.id,n.mapuuid=this.mapImp.mapMetadata.uuid),n.ready=!0,n},popUpCssHacks:function(){let e=document.querySelector(`.flatmap-tooltip-popup`),t=document.querySelector(`.maplibregl-popup-close-button`);e&&(e.style.display=`none`),t.style.display=`block`,this.$refs.tooltip.$el.style.display=`flex`,t.onclick=()=>{this.$emit(`connectivity-info-close`),e&&(e.style.display=`block`)}},closeTooltip:function(){this.$refs.tooltip&&(this.$refs.tooltip.$el.style.display=`none`),document.querySelectorAll(`.maplibregl-popup`).forEach(e=>{e.style.display=`none`}),this.lastHoveredFeature=null},showPopup:function(e,t,n){let r=n;this.mapImp&&(r?r.className||(r.className=`custom-popup`):r={className:`custom-popup`,positionAtLastClick:!0},this.mapImp.showPopup(e,t,r))},showMarkerPopup:function(e,t,n){this.mapImp&&this.mapImp.showMarkerPopup(e,t,n)},closeMinimap:function(){let e=this.$refs.flatmapContainer.querySelector(`.maplibregl-ctrl-minimap`);this.minimapSmall?(e.classList.add(`enlarge`),e.classList.remove(`shrink`)):(e.classList.add(`shrink`),e.classList.remove(`enlarge`)),this.minimapSmall=!this.minimapSmall},addResizeButtonToMinimap:function(){let e=this.$refs.flatmapContainer.querySelector(`.maplibregl-ctrl-minimap`);e&&(this.$refs.minimapResize&&this.$refs.minimapResize.$el.parentNode&&this.$refs.minimapResize.$el.parentNode.removeChild(this.$refs.minimapResize.$el),e.appendChild(this.$refs.minimapResize.$el),this.minimapResizeShow=!0)},setHelpMode:function(e){let t=this.hoverVisibilities.length,n=t-1,r=this.hoverVisibilities[this.helpModeActiveIndex];if(r){let t=r?.refs,n=r?.ref,i=this.$refs[t||n];if(i){let{parentElement:e,nextElementSibling:t}=i.$el,n=e=>e&&(e.classList.contains(`pathway-container`)||e.classList.contains(`pathway-location`));(n(e)||n(t))&&(this.requiresDrawer?this.drawerOpen=!0:this.helpModeActiveIndex+=1)}else this.helpModeActiveIndex+=1,this.setHelpMode(e)}this.hoverVisibilities[this.helpModeActiveIndex]?.ref===`checkBoxPopover`&&!this.showPathwayFilter&&(this.helpModeActiveIndex+=1,this.setHelpMode(e)),e||(this.helpModeActiveIndex=this.helpModeInitialIndex),this.viewingMode!==`Annotation`&&this.helpModeActiveIndex>9&&(this.helpModeActiveIndex=n),e&&this.helpModeActiveIndex>=n&&this.$emit(`help-mode-last-item`,!0),e&&!this.helpModeDialog?(this.inHelp=!0,this.hoverVisibilities.forEach(e=>{e.value=!0})):e&&this.helpModeDialog&&t>this.helpModeActiveIndex?this.helpModeActiveIndex>-1?(this.closeFlatmapHelpPopup(),setTimeout(()=>{this.inHelp=!1,this.hoverVisibilities.forEach(e=>{e.value=!1}),this.showTooltip(this.helpModeActiveIndex,200)},300)):this.helpModeActiveIndex===-1&&this.openFlatmapHelpPopup():(this.inHelp=!1,this.hoverVisibilities.forEach(e=>{e.value=!1}),this.closeFlatmapHelpPopup())},showTooltip:function(e,t=500){this.inHelp||(clearTimeout(this.tooltipWait[e]),this.tooltipWait[e]=setTimeout(()=>{this.hoverVisibilities[e].value=!0,this.$emit(`shown-tooltip`)},t))},hideTooltip:function(e,t=500){this.inHelp||(clearTimeout(this.tooltipWait[e]),this.tooltipWait[e]=setTimeout(()=>{this.hoverVisibilities[e].value=!1},t))},displayTooltip:function(e,t=void 0){let n,r={className:`flatmapvuer-popover`};if(t)n=e,r.annotationFeatureGeometry=t,this.annotationEntry.length&&(r.annotationEvent={type:this.annotationEntry[0].type,feature:this.annotationEntry[0].feature});else{let t=Array.isArray(e)?e[0]:e;t&&(n=this.mapImp.modelFeatureIds(t)[0]),this.activeDrawTool||(r.positionAtLastClick=!0)}this.connectivityInfoSidebar&&this.tooltipEntry.length&&this.viewingMode!==`Annotation`&&this.checkConnectivityTooltipEntry(this.tooltipEntry)&&this.$emit(`connectivity-info-open`,this.tooltipEntry),this.annotationSidebar&&this.viewingMode===`Annotation`&&this.$emit(`annotation-open`,{annotationEntry:this.annotationEntry,commitCallback:this.commitAnnotationEvent}),n&&!this.disableUI&&(this.viewingMode===`Annotation`&&!this.annotationSidebar||this.viewingMode===`Exploration`&&!this.connectivityInfoSidebar)&&(this.tooltipDisplay=!0,this.$nextTick(()=>{this.mapImp.showPopup(n,this.$refs.tooltip.$el,r),this.popUpCssHacks()}))},moveMap:function(e,t={}){if(this.mapImp){let{offsetX:n=0,offsetY:r=0,zoom:i=4}=t,a=this.mapImp.map,o=this.mapImp.bounds.toArray();this.mapImp.zoomToFeatures(e,{noZoomIn:!0}),this.showPathwaysDrawer(!1),o?.length&&setTimeout(()=>{a.fitBounds(o,{offset:[n,r],zoom:i,animate:!0})})}},openFlatmapHelpPopup:function(){if(this.mapImp){let e=this.mapImp.modelFeatureIds(`UBERON:0000948`);e&&e.length>0&&(this.mapImp.showPopup(e[0],`Click for more information`,{anchor:`top`,className:`flatmap-popup-popper`}),this.$emit(`shown-map-tooltip`))}},closeFlatmapHelpPopup:function(){this.$el.querySelectorAll(`.maplibregl-popup-close-button`).forEach(e=>{e.click()})},getLabels:function(){let e=[];if(this.mapImp){let t=this.mapImp.annotations;for(let n of t.values())n.label&&e.push(n.label);return Array.from(new Set(e))}},getVisibilityState:function(e){[`alertSelection`,`pathwaysSelection`,`taxonSelection`].forEach(t=>{let n=this.$refs[t];n&&(e[t]=n.getState())}),this.$refs.treeControls&&(e.systemsSelection=this.$refs.treeControls.$refs.regionTree.getCheckedKeys().filter(e=>!e.includes(`.`)))},setVisibilityState:function(e){[`alertSelection`,`pathwaysSelection`,`taxonSelection`].forEach(t=>{let n=e[t];if(n){let e=this.$refs[t];e&&e.setState(n)}}),`systemsSelection`in e&&this.$refs.treeControls&&(this.$refs.treeControls.$refs.regionTree.setCheckedKeys(e.systemsSelection),this.systems[0].children.forEach(t=>{this.mapImp.enableSystem(t.key,e.systemsSelection.includes(t.key))}))},getState:function(){if(this.mapImp){let e={entry:this.entry,viewport:this.mapImp.getState()},t=this.mapImp.getIdentifier();return this.biologicalSex?e.biologicalSex=this.biologicalSex:t&&t.biologicalSex&&(e.biologicalSex=t.biologicalSex),t&&t.uuid&&(e.uuid=t.uuid),e.viewingMode=this.viewingMode,e.searchTerm=this.searchTerm,e.flightPath3D=this.flightPath3DRadio,e.colour=this.colourRadio,e.outlines=this.outlinesRadio,e.background=this.currentBackground,this.offlineAnnotationEnabled&&(e.offlineAnnotations=sessionStorage.getItem(`anonymous-annotation`)),this.getVisibilityState(e),e}},setState:function(e){e&&(this.mapImp&&e.entry&&this.entry==e.entry&&(!e.biologicalSex||e.biologicalSex===this.biologicalSex)?this.restoreMapState(e):this.createFlatmap(e),this.setStateRequired=!1)},restoreMapState:function(e){if(e){if(e.viewport&&this.mapImp.setState(e.viewport),e.offlineAnnotations&&sessionStorage.setItem(`anonymous-annotation`,e.offlineAnnotations),e.viewingMode&&this.changeViewingMode(e.viewingMode),`flightPath3D`in e&&this.setFlightPath3D(e.flightPath3D),`colour`in e&&this.setColour(e.colour),`outlines`in e&&this.setOutlines(e.outlines),e.background&&this.backgroundChangeCallback(e.background),e.searchTerm){let t=e.searchTerm;this.searchAndShowResult(t,!0,!0)}this.setVisibilityState(e)}},setFlightPathInfo:function(e){let t=1.6;(e===t||e>t)&&(this.displayFlightPathOption=!0,this.setFlightPath3D(!1))},createFlatmap:function(e){if(!this.mapImp&&!this.loading){this.loading=!0,this.flatmapError=null;let t={taxon:this.entry};this.uuid&&(t.uuid=this.uuid),e?(e.uuid?t={uuid:e.uuid}:e.entry&&(t.taxon=e.entry),e.biologicalSex?t.biologicalSex=e.biologicalSex:t.taxon===`NCBITaxon:9606`&&(t.biologicalSex=`PATO:0000384`)):this.biologicalSex&&(t.biologicalSex=this.biologicalSex),this.mapManagerRef.loadMap(t,this.eventCallback(),{minZoom:this.minZoom,tooltips:this.tooltips,minimap:!1,container:this.$refs.display,tooltipDelay:15}).then(t=>{this.mapImp=t,this.serverURL=this.mapImp.makeServerUrl(``).slice(0,-1);let n=this.mapImp.details.version;this.setFlightPathInfo(n);let r=this._stateToBeSet?this._stateToBeSet:e;this.onFlatmapReady(r),this.$nextTick(()=>this.restoreMapState(r))}).catch(e=>{if(console.error(`Flatmap loading error:`,e),this.flatmapError={},e.message&&e.message.indexOf(`Unknown map`)!==-1?(this.flatmapError.title=`Unknown Map!`,this.flatmapError.messages=Object.keys(t).map(e=>`${e===`uuid`?`UUID`:o_(e)}: ${t[e]}`)):(this.flatmapError.title=`Error Loading Map!`,this.flatmapError.messages=[e.message?e.message:e.toString(),`Please try again later or contact support if the problem persists.`]),this.$parent?.$refs?.multiContainer){let e=this.$parent;this.flatmapError.button={text:`Load Default Map`,callback:()=>{let t=e.initial;e.setSpecies(t,void 0,3)}}}this.loading=!1})}else e&&(this._stateToBeSet={...e},this.mapImp&&!this.loading&&this.restoreMapState(this._stateToBeSet))},computePathControlsMaximumHeight(){let e=this.$refs.display;if(e){let t=getComputedStyle(e),n=parseInt(t.paddingTop)+parseInt(t.paddingBottom),r=e.clientHeight-n;this.pathwaysMaxHeight=r-170}},mapResize:function(){try{this.computePathControlsMaximumHeight(),this.mapImp&&this.mapImp.resize()}catch{console.error(`Map resize error`)}},getFilterSources:function(){let e=[`kind`,`taxons`],t=new Set,n=new Set,r=new Map;for(let i of this.mapImp.annotations.values())if(i.source){`alert`in i?t.add(i.source):n.add(i.source);for(let[t,n]of Object.entries(i))if(e.includes(t)){r.has(t)||r.set(t,new Map);let e=r.get(t),a=t=>{let n=t;e.has(n)||e.set(n,new Set),e.get(n).add(`${i.source}`)};Array.isArray(n)?n.forEach(a):a(n)}}let i={alert:{with:[...t],without:[...n]}};for(let[e,t]of r.entries()){i[e]={};for(let[n,r]of t.entries())i[e][n]=[...r.values()]}return i},getFilterOptions:async function(e,t){let n=t||this.getFlatmapKnowledge(),r=this.pathways;return await(0,a.getFlatmapFilterOptions)(this.flatmapAPI,e,n,r)},onFlatmapReady:function(e){this.sensor=(0,t.markRaw)(new l_.default(this.$refs.display,this.mapResize)),this.mapImp.options?.style===`functional`&&(this.isFC=!0),this.mapImp.setBackgroundOpacity(1),this.backgroundChangeCallback(this.currentBackground),this.pathways=this.mapImp.pathTypes(),this.pathways=this.pathways.filter(e=>e.enabled&&e.type!==`other`),this.processSystems(this.mapImp.getSystems()),this.processTaxon(this.mapImp.taxonIdentifiers,e?e.taxonSelection:void 0),this.containsAlert=`alert`in this.mapImp.featureFilterRanges(),this.flatmapLegends=this.mapImp.flatmapLegend,this.loading=!1,this.computePathControlsMaximumHeight(),this.mapResize(),this.handleMapClick(),this.setInitMapState(),this.displayMinimap&&(this.mapImp.createMinimap({position:`top-right`}),this.addResizeButtonToMinimap()),this.$emit(`ready`,this)},handleMapClick:function(){let e=this.mapImp.map;e&&e.on(`click`,e=>{this.connectivityDataSource||this.$emit(`connectivity-info-close`),this.connectivityDataSource=``})},onContextLost:function(){this.lastViewport=(0,t.markRaw)(this.mapImp.getState()),this.flatmapError={},this.flatmapError.title=`GL context lost!`,this.flatmapError.messages=[`A display issue has occurred due
21
21
  to a limit on available WebGL contexts. You can restore the display
22
22
  using the Restore Context button. Please see the
23
23
  <a href="https://docs.sparc.science/docs/integrated-maps-viewer-overview#limit-on-available-webgl-contexts" target='_blank'>documentation</a>
24
- for more details.`],this.flatmapError.button={text:`Restore Context`,callback:()=>{this.forceContextRestore()}}},onContextRestored:function(){if(this.mapImp){this.handleMapClick(),this.setInitMapState();let e=this.getState();e&&(e.viewport=this.lastViewport),this.restoreMapState(e),this.displayMinimap&&(this.mapImp.createMinimap({position:`top-right`}),this.addResizeButtonToMinimap()),this.filterToRestore&&=(this.mapImp.setVisibilityFilter(this.filterToRestore),void 0),this.$emit(`context-restored`,this)}},showPathwaysDrawer:function(e){this.drawerOpen=e},searchAndShowResult:function(e,t,n=!0){if(this.mapImp){if(e===void 0||e===``)return this.mapImp.clearSearchResults(),this.viewingMode===`Exploration`?this.$emit(`connectivity-info-close`):this.viewingMode===`Annotation`&&this.manualAbortedOnClose(),this.searchTerm=``,!0;{let r=this.mapImp.search(e);if(r?.results?.length){if(this.mapImp.showSearchResults(r),t){let e;for(let t=0;t<r.results.length;t++){e=r.results[t].featureId;let 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A_=ug(__,[[`render`,k_],[`__scopeId`,`data-v-c6c6b030`]]),j_={"NCBITaxon:10114":`01fedbf9-d783-509c-a10c-827941ab13da`,"NCBITaxon:9823":`a336ac04-24db-561f-a25f-1c994fe17410`,"NCBITaxon:9606":`42ed6323-f645-5fbe-bada-9581819cf689`,"NCBITaxon:10090":`25285fab-48a0-5620-a6a0-f9a0374837d5`,"NCBITaxon:9685":`73060497-46a6-52bf-b975-cac511c127cb`},M_={name:`MultiFlatmapVuer`,components:{Col:Sh,Row:xh,Option:Im,Select:Fm,Popover:Zh,FlatmapVuer:A_},created:function(){this.loadMapManager()},mounted:function(){this.initialise(),p_.on(`onActionClick`,e=>{this.resourceSelected(e)}),p_.on(`open-pubmed-url`,e=>{this.$emit(`open-pubmed-url`,e)})},methods:{initialise:function(){return this.multiflatmapError=null,new Promise(e=>{if(this.requireInitialisation){this.requireInitialisation=!1;let t=new AbortController,n=t.signal,r=setTimeout(()=>t.abort(),5e3);fetch(this.flatmapAPI,{signal:n}).then(t=>{if(!t.ok){if(t.status===404)return this.multiflatmapError={},this.multiflatmapError.title=`MultiFlatmap Error!`,this.multiflatmapError.messages=[`Sorry, the component could not be loaded because the specified
25
25
  flatmap API endpoint is incorrect. Please check the endpoint URL
26
26
  or contact support if the problem persists.`],this.initialised=!0,e(),this.resolveList.forEach(e=>e()),Promise.reject({handled:!0});throw Error(`HTTP ${t.status}: ${t.statusText}`)}return t.json()}).then(t=>{if(t&&t.status_code===404){console.error(`Flatmap API endpoint is incorrect`,t),this.multiflatmapError={},this.multiflatmapError.title=`MultiFlatmap Error!`,this.multiflatmapError.messages=[`Sorry, the component could not be loaded because the specified
27
27
  flatmap API endpoint is incorrect. Please check the endpoint URL
28
28
  or contact support if the problem persists.`],this.initialised=!0,e(),this.resolveList.forEach(e=>e());return}Object.keys(this.availableSpecies).forEach(e=>{let n=this.availableSpecies[e].uuid;if(n&&t.length&&t.map(e=>e.uuid).indexOf(n)>0)this.speciesList[e]=this.availableSpecies[e];else for(let n=0;n<t.length;n++)if(this.availableSpecies[e].taxo===t[n].taxon){if(this.availableSpecies[e].biologicalSex){if(t[n].biologicalSex&&t[n].biologicalSex===this.availableSpecies[e].biologicalSex){this.speciesList[e]=this.availableSpecies[e];break}}else{this.speciesList[e]=this.availableSpecies[e];break}}});let n=this.initial;if(this.state){let e=this.state.state;n=(!e||!e.uuid&&!e.entry)&&this.state.species?this.state.species:void 0}n&&(this.activeSpecies=n&&this.speciesList[n]!==void 0?n:Object.keys(this.speciesList)[0],this.setSpecies(this.activeSpecies,this.state?this.state.state:void 0,5)),this.initialised=!0,e(),this.resolveList.forEach(e=>{e()})}).catch(t=>{t&&t.handled||(console.error(`Error fetching flatmap:`,t),this.initialised=!0,this.multiflatmapError={},this.multiflatmapError.title=`MultiFlatmap Error!`,this.multiflatmapError.messages=[`Sorry, the component could not be loaded due to an unexpected error.
29
- Please try again later or contact support if the problem persists.`],e(),this.resolveList.forEach(e=>{e()}))}).finally(()=>{clearTimeout(r)})}else this.initialised?e():this.resolveList.push(e)})},loadMapManager:function(){this.mapManagerRef||(this.mapManager?this.mapManagerRef=this.mapManager:(this.mapManagerRef=(0,t.markRaw)(new c_.MapViewer(this.flatmapAPI,{container:void 0})),this.$emit(`mapmanager-loaded`,this.mapManagerRef)))},resourceSelected:function(e){this.$emit(`resource-selected`,e)},onContextRestored:function(e){this.$emit(`context-restored`,e)},FlatmapReady:function(e){this.$emit(`ready`,e)},getCurrentFlatmap:function(){return this.$refs[this.activeSpecies][0]},panZoomCallback:function(e){this.$emit(`pan-zoom-callback`,e)},onAnnotationClose:function(){this.$emit(`annotation-close`)},onAnnotationOpen:function(e){this.$emit(`annotation-open`,e)},updateOfflineAnnotationEnabled:function(e){this.$emit(`update-offline-annotation-enabled`,e)},onConnectivityInfoClose:function(){this.$emit(`connectivity-info-close`)},onConnectivityInfoOpen:function(e){this.$emit(`connectivity-info-open`,e)},onConnectivityError:function(e){this.$emit(`connectivity-error`,e)},onNeuronConnectionFeatureClick:function(e){this.$emit(`neuron-connection-feature-click`,e)},onSelectionsDataChanged:function(e){this.$emit(`pathway-selection-changed`,e)},showPopup:function(e,t,n){this.getCurrentFlatmap().showPopup(e,t,n)},showMarkerPopup:function(e,t,n){this.getCurrentFlatmap().showMarkerPopup(e,t,n)},setSpecies:function(e,t,n){if(this.$refs&&e in this.$refs)this.activeSpecies=e,this.$refs[this.activeSpecies][0].createFlatmap(t),this.$emit(`flatmapChanged`,this.activeSpecies);else if(n){let r=n-1;r>=0&&this.$nextTick(()=>{this.setSpecies(e,t,r)})}},viewLatestMap:function(e){let t=Object.keys(this.speciesList);for(let n=0;n<t.length;n++){let r=this.speciesList[t[n]];if(!r.isLegacy&&r.taxo===e.entry&&r.biologicalSex===e.biologicalSex){this.setSpecies(t[n],e,0);return}}},createLegacyEntry:function(e,t,n){if(n&&t){let r=`Legacy`;return e.species&&(e.species.slice(0,6)===`Legacy`?r=e.species:r+=` ${e.species}`),this.speciesList[r]={taxo:t,isLegacy:!0,displayWarning:!0},{species:r,state:{entry:t,uuid:n,viewport:e.state.viewport,searchTerm:e.state.searchTerm}}}},updateState:function(e){return new Promise(t=>{if(e&&e.state){let n=e.state;if(!n.uuid){if(n.entry){let r=n.entry in k_?k_[n.entry]:void 0;t(this.createLegacyEntry(e,n.entry,r)||e)}}else if(n.entry)return new Promise(()=>{let r={taxon:n.entry};n.biologicalSex&&(r.biologicalSex=n.biologicalSex),this.mapManagerRef.findMap(r).then(t=>{if(t.uuid!==n.uuid)return this.createLegacyEntry(e,n.entry,n.uuid)}).then(n=>{t(n||e)}).catch(()=>{t(e)})})}t(e)})},getState:function(){let e={species:this.activeSpecies,state:void 0};return e.state=this.getCurrentFlatmap().getState(),e},setState:function(e){e&&(this.loadMapManager(),this.updateState(e).then(e=>{this.initialise().then(()=>{e.species&&e.species!==this.activeSpecies?this.setSpecies(e.species,e.state,5):e.state&&this.getCurrentFlatmap().setState(e.state)})}))},activateTooltipByIndex:function(e){return e===this.helpModeActiveItem&&this.helpMode},onHelpModeLastItem:function(e){e&&this.$emit(`help-mode-last-item`,!0)},onTooltipShown:function(){this.$emit(`shown-tooltip`)},onMapTooltipShown:function(){this.$emit(`shown-map-tooltip`)},changeViewingMode:function(e){this.getCurrentFlatmap().changeViewingMode(e)},setConnectionType:function(e){this.getCurrentFlatmap().setConnectionType(e)}},props:{initial:{type:String,default:``},minZoom:{type:Number,default:1},renderAtMounted:{type:Boolean,default:!1},render:{type:Boolean,default:!0},helpMode:{type:Boolean,default:!1},helpModeActiveItem:{type:Number,default:0},helpModeDialog:{type:Boolean,default:!1},helpModeLastItem:{type:Boolean,default:!1},displayMinimap:{type:Boolean,default:!1},showStarInLegend:{type:Boolean,default:!1},enableOpenMapUI:{type:Boolean,default:!1},openMapOptions:{type:Array},availableSpecies:{type:Object,default:function(){return{"Human 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0},flatmapAPI:{type:String,default:`https://mapcore-demo.org/current/flatmap/v3/`},sparcAPI:{type:String,default:`https://api.sparc.science/`},disableUI:{type:Boolean,default:!1},connectivityInfoSidebar:{type:Boolean,default:!1},annotationSidebar:{type:Boolean,default:!1},showLocalSettings:{type:Boolean,default:!0},showOpenMapButton:{type:Boolean,default:!0},showPathwayFilter:{type:Boolean,default:!0},externalLegends:{type:Array,default:function(){return[]}},tooltipContentProvider:{type:Function,default:null}},data:function(){return{activeSpecies:void 0,speciesList:{},requireInitialisation:!0,resolveList:(0,t.markRaw)([]),initialised:!1,mapManagerRef:void 0,multiflatmapError:null}},watch:{state:{handler:function(e){this.setState(e)},immediate:!0,deep:!0},activeSpecies:{handler:function(e,t){t&&this.$refs[t][0].forceContextLoss()}}}},j_={class:`multi-container`,ref:`multiContainer`},M_={key:0,style:{position:`absolute`,"z-index":`100`}},N_={class:`select-box-icon`};function 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F_=cg(A_,[[`render`,P_],[`__scopeId`,`data-v-07cbe147`]]);e.FlatmapVuer=O_,e.MultiFlatmapVuer=F_});
29
+ Please try again later or contact support if the problem persists.`],e(),this.resolveList.forEach(e=>{e()}))}).finally(()=>{clearTimeout(r)})}else this.initialised?e():this.resolveList.push(e)})},loadMapManager:function(){this.mapManagerRef||(this.mapManager?this.mapManagerRef=this.mapManager:(this.mapManagerRef=(0,t.markRaw)(new u_.MapViewer(this.flatmapAPI,{container:void 0})),this.$emit(`mapmanager-loaded`,this.mapManagerRef)))},resourceSelected:function(e){this.$emit(`resource-selected`,e)},onContextRestored:function(e){this.$emit(`context-restored`,e)},FlatmapReady:function(e){this.$emit(`ready`,e)},getCurrentFlatmap:function(){return this.$refs[this.activeSpecies][0]},panZoomCallback:function(e){this.$emit(`pan-zoom-callback`,e)},onAnnotationClose:function(){this.$emit(`annotation-close`)},onAnnotationOpen:function(e){this.$emit(`annotation-open`,e)},updateOfflineAnnotationEnabled:function(e){this.$emit(`update-offline-annotation-enabled`,e)},onConnectivityInfoClose:function(){this.$emit(`connectivity-info-close`)},onConnectivityInfoOpen:function(e){this.$emit(`connectivity-info-open`,e)},onConnectivityError:function(e){this.$emit(`connectivity-error`,e)},onNeuronConnectionFeatureClick:function(e){this.$emit(`neuron-connection-feature-click`,e)},onSelectionsDataChanged:function(e){this.$emit(`pathway-selection-changed`,e)},showPopup:function(e,t,n){this.getCurrentFlatmap().showPopup(e,t,n)},showMarkerPopup:function(e,t,n){this.getCurrentFlatmap().showMarkerPopup(e,t,n)},setSpecies:function(e,t,n){if(this.$refs&&e in 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r={taxon:n.entry};n.biologicalSex&&(r.biologicalSex=n.biologicalSex),this.mapManagerRef.findMap(r).then(t=>{if(t.uuid!==n.uuid)return this.createLegacyEntry(e,n.entry,n.uuid)}).then(n=>{t(n||e)}).catch(()=>{t(e)})})}t(e)})},getState:function(){let e={species:this.activeSpecies,state:void 0};return e.state=this.getCurrentFlatmap().getState(),e},setState:function(e){e&&(this.loadMapManager(),this.updateState(e).then(e=>{this.initialise().then(()=>{e.species&&e.species!==this.activeSpecies?this.setSpecies(e.species,e.state,5):e.state&&this.getCurrentFlatmap().setState(e.state)})}))},activateTooltipByIndex:function(e){return e===this.helpModeActiveItem&&this.helpMode},onHelpModeLastItem:function(e){e&&this.$emit(`help-mode-last-item`,!0)},onTooltipShown:function(){this.$emit(`shown-tooltip`)},onMapTooltipShown:function(){this.$emit(`shown-map-tooltip`)},changeViewingMode:function(e){let 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