@abi-software/flatmapvuer 0.6.1-auth.3 → 0.6.1-auth.4

package/dist/flatmapvuer.js

@@ -90592,16 +90592,13 @@ const rht = tht("main", {
   state: () => ({
     userProfile: {
       token: ""
-    },
-    marker: "flatmapvuer marker"
+    }
   }),
   getters: {
     userToken(e) {
-      return e.userProfile.token;
+      return console.log("🚀 ~ flatmapvuer userToken ~ state:", e), e.userProfile.token;
     }
-  },
-  actions: {},
-  persist: {}
+  }
 }), JD = (e, t) => {
   const r = [];
   let n = e.organs ? e.organs : e.ftus;

package/dist/flatmapvuer.umd.cjs

@@ -1697,4 +1697,4 @@ ${r.vs}`,r}setDataProperty(r,n,i){const o=be(this,Z4).get(+r);o&&(!(n in o)||o[n
 	state: () => new MyClass()
 Found in store "${U.$id}".`),x&&o&&r.hydrate&&r.hydrate(U.$state,x),d=!0,Q=!0,U}function _8t(e,t,r){let n,i;const o=typeof t=="function";if(typeof e=="string")n=e,i=o?r:t;else if(i=e,n=e.id,process.env.NODE_ENV!=="production"&&typeof n!="string")throw new Error('[🍍]: "defineStore()" must be passed a store id as its first argument.');function a(s,h){const d=T.hasInjectionContext();if(s=(process.env.NODE_ENV==="test"&&o8&&o8._testing?null:s)||(d?T.inject(p8t,null):null),s&&qd(s),process.env.NODE_ENV!=="production"&&!o8)throw new Error(`[🍍]: "getActivePinia()" was called but there was no active Pinia. Are you trying to use a store before calling "app.use(pinia)"?
 See https://pinia.vuejs.org/core-concepts/outside-component-usage.html for help.
-This will fail in production.`);s=o8,s._s.has(n)||(o?_y(n,t,i,s):LO(n,i,s),process.env.NODE_ENV!=="production"&&(a._pinia=s));const Q=s._s.get(n);if(process.env.NODE_ENV!=="production"&&h){const p="__hot:"+n,g=o?_y(p,t,i,s,!0):LO(p,co({},i),s,!0);h._hotUpdate(g),delete s.state.value[p],s._s.delete(p)}if(process.env.NODE_ENV!=="production"&&my){const p=T.getCurrentInstance();if(p&&p.proxy&&!h){const g=p.proxy,_="_pStores"in g?g._pStores:g._pStores={};_[n]=Q}}return Q}return a.$id=n,a}function v8t(e,t){return Array.isArray(t)?t.reduce((r,n)=>(r[n]=function(){return e(this.$pinia)[n]},r),{}):Object.keys(t).reduce((r,n)=>(r[n]=function(){const i=e(this.$pinia),o=t[n];return typeof o=="function"?o.call(this,i):i[o]},r),{})}const x8t=_8t("main",{state:()=>({userProfile:{token:""},marker:"flatmapvuer marker"}),getters:{userToken(e){return e.userProfile.token}},actions:{},persist:{}}),wO=(e,t)=>{const r=[];let n=e.organs?e.organs:e.ftus;const i=n?n.filter((o,a)=>n.findIndex(s=>s.label===o.label)===a):void 0;return i&&i.forEach(o=>{const a={label:o.label,models:o.models,key:`${t}.${o.label}`},s=wO(o,a.key);s.length>0&&(a.children=s),r.push(a)}),r},b8t=function(){return{destinations:[],origins:[],components:[],destinationsWithDatasets:[],originsWithDatasets:[],componentsWithDatasets:[],resource:void 0}},L8t={name:"FlatmapVuer",components:{Button:na,Col:K3,Loading:e$,Radio:Kx,RadioGroup:Yx,Row:qa,Select:B6,MapSvgIcon:M1.MapSvgIcon,MapSvgSpriteColor:M1.MapSvgSpriteColor,Tooltip:FT,TreeControls:Eb,SelectionsGroup:wb,SvgLegends:Mb,ElIconWarningFilled:bv,ElIconArrowDown:F3,ElIconArrowLeft:vv},beforeCreate:function(){this.mapManager=void 0,this.mapImp=void 0,this.setStateRequired=!1},methods:{setFlightPath3D:function(e){this.flightPath3DRadio=e,this.mapImp&&this.mapImp.enable3dPaths(e)},viewLatestMap:function(){let e=this.biologicalSex?this.biologicalSex:void 0;this.entry==="NCBITaxon:9606"&&(e="PATO:0000384");const t={entry:this.entry,biologicalSex:e,viewport:this.mapImp.getState()};this.$emit("view-latest-map",t)},backgroundChangeCallback:function(e){this.currentBackground=e,this.mapImp&&this.mapImp.setBackgroundColour(this.currentBackground,1)},processSystems:function(e){if(this.systems.length=0,e&&e.length>0){const t={label:"All",key:"All",children:[]};e.forEach(r=>{const n={colour:r.colour,enabled:r.enabled,label:r.id,key:r.id},i=wO(r,n.key);i.length>0&&(n.children=i),t.children.push(n)}),this.systems.push(t)}},processTaxon:function(e,t){this.taxonConnectivity.length=0,t.forEach(r=>{Ab(e,r).then(n=>{const i={taxon:r,label:n};this.taxonConnectivity.push(i)})})},toggleDrawer:function(){this.drawerOpen=!this.drawerOpen},setColour:function(e){this.colourRadio=e,this.mapImp&&this.mapImp.setColour({colour:e,outline:this.outlinesRadio})},setOutlines:function(e){this.outlineRadio=e,this.mapImp&&this.mapImp.setColour({colour:this.colourRadio,outline:e})},resetView:function(){this.mapImp&&(this.mapImp.resetMap(),this.$refs.centrelinesSelection&&this.$refs.centrelinesSelection.reset(),this.$refs.skcanSelection&&this.$refs.skcanSelection.reset(),this.$refs.layersSelection&&this.$refs.layersSelection.reset(),this.$refs.systemsSelection&&this.$refs.pathwaysSelection.reset(),this.$refs.pathwaysSelection&&this.$refs.pathwaysSelection.reset())},zoomIn:function(){this.mapImp&&this.mapImp.zoomIn()},zoomOut:function(){this.mapImp&&this.mapImp.zoomOut()},centreLinesSelected:function(e){this.mapImp&&this.mapImp.enableCentrelines(e.value)},sckanSelected:function(e){this.mapImp&&this.mapImp.enableSckanPath(e.key,e.value)},checkAllSCKAN:function(e){this.mapImp&&e.keys.forEach(t=>this.mapImp.enableSckanPath(t,e.value))},highlightConnectedPaths:function(e){if(this.mapImp){let r=[...this.mapImp.pathModelNodes(e)].map(i=>this.mapImp.featureProperties(i)),n=[];r.forEach(i=>{this.mapImp.nodePathModels(i.featureId).forEach(o=>{n.push(o)})}),this.mapImp.zoomToFeatures(n,{noZoomIn:!0})}},systemSelected:function(e){this.mapImp&&this.mapImp.enableSystem(e.key,e.value)},checkAllSystems:function(e){this.mapImp&&this.systems[0].children.forEach(t=>this.mapImp.enableSystem(t.label,e))},ftuSelected:function(e){this.searchAndShowResult(e,!0)},layersSelected:function(e){this.mapImp&&this.mapImp.enableLayer(e.key,e.value)},checkAllLayers:function(e){this.mapImp&&e.keys.forEach(t=>this.mapImp.enableLayer(t,e.value))},taxonsSelected:function(e){this.mapImp&&this.mapImp.enableConnectivityByTaxonIds(e.key,e.value)},checkAllTaxons:function(e){this.mapImp&&e.keys.forEach(t=>this.mapImp.enableConnectivityByTaxonIds(t,e.value))},pathwaysSelected:function(e){this.mapImp&&this.mapImp.enablePath(e.key,e.value)},checkAllPathways:function(e){this.mapImp&&e.keys.forEach(t=>this.mapImp.enablePath(t,e.value))},enablePanZoomEvents:function(e){this.mapImp.enablePanZoomEvents(e)},eventCallback:function(){return(e,t,...r)=>{if(e!=="pan-zoom"){const n=t.label,i=[t.models],o=this.entry,a=this.biologicalSex;let s;t.taxons&&(typeof t.taxons!="object"?s=JSON.parse(t.taxons):s=t.taxons);const h={dataset:t.dataset,biologicalSex:a,taxonomy:o,resource:i,label:n,feature:t,userData:r,eventType:e,provenanceTaxonomy:s};e==="click"?this.viewingMode==="Network Discovery"?this.highlightConnectedPaths([t.models]):this.currentActive=t.models?t.models:"":e==="mouseenter"&&this.viewingMode!=="Network Discovery"&&(this.currentHover=t.models?t.models:""),t&&t.type!=="marker"&&e==="click"&&this.viewingMode!=="Network Discovery"&&this.checkAndCreatePopups(h),this.$emit("resource-selected",h)}else this.$emit("pan-zoom-callback",t)}},checkAndCreatePopups:async function(e){if(this.viewingMode==="Annotation")e.feature&&e.feature.featureId&&e.feature.models?(this.annotationEntry={...e.feature,resourceId:this.serverUUID},this.displayTooltip(e.feature.models)):this.annotation={};else{let t=await this.flatmapQueries.retrieveFlatmapKnowledgeForEvent(e);(t[0]||t[1]||e.feature.hyperlinks&&e.feature.hyperlinks.length>0)&&(this.resourceForTooltip=e.resource[0],e.resourceForTooltip=this.resourceForTooltip,this.createTooltipFromNeuronCuration(e))}},popUpCssHacks:function(){let e=document.querySelector(".flatmap-tooltip-popup");e&&(e.style.display="none"),document.querySelector(".maplibregl-popup-close-button").style.display="block",this.$refs.tooltip.$el.style.display="flex",document.querySelector(".maplibregl-popup-close-button").onclick=()=>{document.querySelector(".flatmap-tooltip-popup").style.display="block"}},closeTooltip:function(){this.$refs.tooltip.$el.style.display="none",document.querySelectorAll(".maplibregl-popup").forEach(e=>{e.style.display="none"})},createTooltipFromNeuronCuration:async function(e){this.tooltipEntry=await this.flatmapQueries.createTooltipData(e),this.displayTooltip(e.resource[0])},showPopup:function(e,t,r){let n=r;this.mapImp&&(n?n.className||(n.className="custom-popup"):n={className:"custom-popup",positionAtLastClick:!0},this.mapImp.showPopup(e,t,n))},showMarkerPopup:function(e,t,r){this.mapImp&&this.mapImp.showMarkerPopup(e,t,r)},closeMinimap:function(){let e=this.$refs.flatmapContainer.querySelector(".maplibregl-ctrl-minimap");this.minimapSmall?(e.classList.add("enlarge"),e.classList.remove("shrink")):(e.classList.add("shrink"),e.classList.remove("enlarge")),this.minimapSmall=!this.minimapSmall},addResizeButtonToMinimap:function(){let e=this.$refs.flatmapContainer.querySelector(".maplibregl-ctrl-minimap");e&&(this.$refs.minimapResize&&this.$refs.minimapResize.$el.parentNode&&this.$refs.minimapResize.$el.parentNode.removeChild(this.$refs.minimapResize.$el),e.appendChild(this.$refs.minimapResize.$el),this.minimapResizeShow=!0)},setHelpMode:function(e){e?(this.inHelp=!0,this.hoverVisibilities.forEach(t=>{t.value=!0}),this.openFlatmapHelpPopup()):(this.inHelp=!1,this.hoverVisibilities.forEach(t=>{t.value=!1}),this.closeFlatmapHelpPopup())},showToolitip:function(e){this.inHelp||(clearTimeout(this.tooltipWait[e]),this.tooltipWait[e]=setTimeout(()=>{this.hoverVisibilities[e].value=!0},500))},hideToolitip:function(e){this.inHelp||(clearTimeout(this.tooltipWait[e]),this.tooltipWait[e]=setTimeout(()=>{this.hoverVisibilities[e].value=!1},500))},displayTooltip:function(e){this.tooltipDisplay=!0,this.disableUI||this.$nextTick(()=>{this.displayPopup(e)})},displayPopup:function(e){this.mapImp.showPopup(this.mapImp.modelFeatureIds(e)[0],this.$refs.tooltip.$el,{className:"flatmapvuer-popover",positionAtLastClick:!0}),this.popUpCssHacks()},openFlatmapHelpPopup:function(){if(this.mapImp){let e=this.mapImp.modelFeatureIds("UBERON:0000948");e&&e.length>0&&this.mapImp.showPopup(e[0],"Click for more information",{anchor:"top",className:"flatmap-popup-popper"})}},closeFlatmapHelpPopup:function(){this.$el.querySelectorAll(".maplibregl-popup-close-button").forEach(e=>{e.click()})},getLabels:function(){let e=[];if(this.mapImp){let t=this.mapImp.annotations;for(let r of t.values())r.label&&e.push(r.label);return Array.from(new Set(e))}},getState:function(){if(this.mapImp){let e={entry:this.entry,viewport:this.mapImp.getState()};const t=this.mapImp.getIdentifier();return this.biologicalSex?e.biologicalSex=this.biologicalSex:t&&t.biologicalSex&&(e.biologicalSex=t.biologicalSex),t&&t.uuid&&(e.uuid=t.uuid),e}},setState:function(e){e&&(this.mapImp&&e.entry&&this.entry==e.entry&&(!e.biologicalSex||e.biologicalSex===this.biologicalSex)?e.viewport&&this.mapImp.setState(e.viewport):this.createFlatmap(e),this.setStateRequired=!1)},restoreMapState:function(e){e&&(e.viewport&&this.mapImp.setState(e.viewport),e.searchTerm&&this.searchAndShowResult(e.searchTerm,!0))},setFlightPathInfo:function(e){(e===1.6||e>1.6)&&(this.displayFlightPathOption=!0,this.setFlightPath3D(!0))},createFlatmap:function(e){if(!this.mapImp&&!this.loading){this.loading=!0;let t=!1;this.displayMinimap&&(t={position:"top-right"});let r={taxon:this.entry};this.uuid&&(r.uuid=this.uuid),e?e.uuid?r={uuid:e.uuid}:e.entry&&(r.taxon=e.entry,e.biologicalSex?r.biologicalSex=e.biologicalSex:r.taxon==="NCBITaxon:9606"&&(r.biologicalSex="PATO:0000384")):this.biologicalSex&&(r.biologicalSex=this.biologicalSex),this.mapManager.loadMap(r,this.$refs.display,this.eventCallback(),{minZoom:this.minZoom,tooltips:this.tooltips,minimap:t}).then(i=>{this.mapImp=i,this.serverUUID=this.mapImp.getIdentifier().uuid;let o=this.mapImp.details.version;this.setFlightPathInfo(o),this.onFlatmapReady(),this._stateToBeSet?this.restoreMapState(this._stateToBeSet):this.restoreMapState(e)})}else e&&(this._stateToBeSet={viewport:e.viewport,searchTerm:e.searchTerm},this.mapImp&&!this.loading&&this.restoreMapState(this._stateToBeSet))},computePathControlsMaximumHeight(){const e=this.$refs.display;if(e){const t=getComputedStyle(e),r=parseInt(t.paddingTop)+parseInt(t.paddingBottom),n=e.clientHeight-r;this.pathwaysMaxHeight=n-170}},mapResize:function(){try{this.computePathControlsMaximumHeight(),this.mapImp&&(this.mapImp.resize(),this.showMinimap(this.displayMinimap),this.mapImp._minimap&&this.mapImp._minimap._miniMap.resize())}catch{console.error("Map resize error")}},onFlatmapReady:function(){this.sensor=new _G(this.$refs.display,this.mapResize),this.mapImp.options&&this.mapImp.options.style==="functional"&&(this.isFC=!0),this.mapImp.setBackgroundOpacity(1),this.backgroundChangeCallback(this.currentBackground),this.pathways=this.mapImp.pathTypes(),this.mapImp.enableCentrelines(!1),this.processSystems(this.mapImp.getSystems()),this.processTaxon(this.flatmapAPI,this.mapImp.taxonIdentifiers),this.addResizeButtonToMinimap(),this.loading=!1,this.computePathControlsMaximumHeight(),this.drawerOpen=!0,this.mapResize(),this.$emit("ready",this)},showMinimap:function(e){this.mapImp&&this.mapImp.showMinimap(e)},showPathwaysDrawer:function(e){this.drawerOpen=e},searchAndShowResult:function(e,t){if(this.mapImp){if(e===void 0||e==="")return this.mapImp.clearSearchResults(),!0;{const r=this.mapImp.search(e);if(r&&r.results&&r.results.length>0){if(this.mapImp.showSearchResults(r),t&&r.results[0].featureId&&r.results[0].text){const n=this.mapImp.annotation(r.results[0].featureId);this.mapImp.showPopup(r.results[0].featureId,n.label,{className:"custom-popup",positionAtLastClick:!1,preserveSelection:!0})}return!0}else this.mapImp.clearSearchResults()}}return!1},searchSuggestions:function(e){return this.mapImp?this.mapImp.search(e):[]}},props:{entry:{type:String,required:!0},uuid:String,biologicalSex:{type:String,default:""},minZoom:{type:Number,default:4},tooltips:{type:Boolean,default:!0},helpMode:{type:Boolean,default:!1},renderAtMounted:{type:Boolean,default:!0},displayMinimap:{type:Boolean,default:!1},displayWarning:{type:Boolean,default:!1},enableOpenMapUI:{type:Boolean,default:!1},openMapOptions:{type:Array,default:function(){return[{display:"Open AC Map",key:"AC"},{display:"Open FC Map",key:"FC"},{display:"Open 3D Human Map",key:"3D"}]}},showStarInLegend:{type:Boolean,default:!1},isLegacy:{type:Boolean,default:!1},displayLatestChanges:{type:Boolean,default:!1},state:{type:Object,default:void 0},flatmapAPI:{type:String,default:"https://mapcore-demo.org/current/flatmap/v3/"},sparcAPI:{type:String,default:"https://api.sparc.science/"},disableUI:{type:Boolean,default:!1}},provide(){return{flatmapAPI:this.flatmapAPI,sparcAPI:this.sparcAPI,userApiKey:this.userToken}},data:function(){return{annotationEntry:{},tooltipDisplay:!1,serverUUID:void 0,layers:[],pathways:[],sckanDisplay:[{label:"Display Path with SCKAN",key:"VALID"}],centreLines:[{label:"Display 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0}},computed:{...v8t(x8t,["userToken"])},watch:{entry:function(){this.state||this.createFlatmap()},helpMode:function(e,t){e!==t&&this.setHelpMode(val)},state:{handler:function(e,t){e!==t&&(this.mapManager?this.setState(e):this.setStateRequired=!0)},immediate:!0,deep:!0},disableUI:function(e){e&&this.closeTooltip()}},mounted:function(){this.openMapRef=T.shallowRef(this.$refs.openMapRef),this.backgroundIconRef=T.shallowRef(this.$refs.backgroundIconRef),this.tooltipWait=[],this.tooltipWait.length=this.hoverVisibilities.length,this.mapManager=new yO(this.flatmapAPI),this.flatmapQueries=new mG,this.flatmapQueries.initialise(this.flatmapAPI),this.state?this.setStateRequired&&this.setState(this.state):this.renderAtMounted&&this.createFlatmap()}},Po=e=>(T.pushScopeId("data-v-4f5a6743"),e=e(),T.popScopeId(),e),w8t={class:"flatmap-container",ref:"flatmapContainer","element-loading-text":"Loading...","element-loading-background":"rgba(0, 0, 0, 0.3)"},E8t={style:{height:"100%",width:"100%",position:"relative","overflow-y":"none"}},M8t={style:{height:"100%",width:"100%"},ref:"display"},A8t={class:"beta-popovers"},C8t=Po(()=>T.createElementVNode("a",{href:"https://sparc.science/resources/1ZUKXU2YmLcn2reCyXjlew",target:"_blank"}," ApiNATOMY ",-1)),S8t=Po(()=>T.createElementVNode("a",{href:"https://sparc.science/resources/6eg3VpJbwQR4B84CjrvmyD",target:"_blank"}," SCKAN ",-1)),H8t=Po(()=>T.createElementVNode("a",{href:"https://sparc.science/resources/1ZUKXU2YmLcn2reCyXjlew",target:"_blank"}," ApiNATOMY ",-1)),O8t=Po(()=>T.createElementVNode("a",{href:"https://sparc.science/resources/6eg3VpJbwQR4B84CjrvmyD",target:"_blank"}," SCKAN ",-1)),V8t=Po(()=>T.createElementVNode("span",{class:"warning-text"},"Legacy Map",-1)),D8t={key:1,class:"warning-text"},P8t=Po(()=>T.createElementVNode("span",{class:"warning-text"},"What's new?",-1)),I8t=Po(()=>T.createElementVNode("b",null,"Network discovery mode",-1)),k8t=Po(()=>T.createElementVNode("p",null," You can now view the network of neurons connected to a selected neuron. This mode is located in the settings at the bottom right. Once discovery mode is on, click on a neuron to see its connections. ",-1)),R8t=Po(()=>T.createElementVNode("b",null,"Now can display up to 6 panes",-1)),B8t=Po(()=>T.createElementVNode("p",null," You can now display up to 6 panes in the flatmap. This allows you to compare between different datasets and/or different views of the same dataset. 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",32)):e.isFC?(T.openBlock(),T.createElementBlock("p",{key:1,onMouseover:t[2]||(t[2]=rt=>o.showToolitip(6)),onMouseout:t[3]||(t[3]=rt=>o.hideToolitip(6))},[T.createTextVNode(" This map displays the connectivity of individual neurons. Specifically, those which align with (parts of) the neuron populations from the "),C8t,T.createTextVNode(" models available in "),S8t,T.createTextVNode(". ")],32)):(T.openBlock(),T.createElementBlock("p",{key:2,onMouseover:t[4]||(t[4]=rt=>o.showToolitip(6)),onMouseout:t[5]||(t[5]=rt=>o.hideToolitip(6))},[T.createTextVNode(" This map displays the connectivity of neuron populations. Specifically, those from the primarily rat-based "),H8t,T.createTextVNode(" models available in "),O8t,T.createTextVNode(". New connectivity and species specificity will be added as the SPARC program progresses. 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J8t=Wa(G8t,[["render",Y8t],["__scopeId","data-v-5550e1f2"]]);Fr.FlatmapVuer=vy,Fr.MultiFlatmapVuer=J8t,Fr.Tooltip=FT,Object.defineProperty(Fr,Symbol.toStringTag,{value:"Module"})});

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@abi-software/flatmapvuer",
-  "version": "0.6.1-auth.3",
+  "version": "0.6.1-auth.4",
   "license": "Apache-2.0",
   "files": [
     "dist/*",

package/src/main.js

@@ -6,4 +6,4 @@ const pinia = createPinia()
 const app = createApp(App)
 
 app.use(pinia)
-app.mount('#app')
+app.mount('#app')

package/src/store/index.js

@@ -5,17 +5,11 @@ export const useMainStore = defineStore('main', {
     userProfile: {
       token: ''
     },
-    marker: 'flatmapvuer marker'
   }),
   getters: {
     userToken(state) {
+      console.log("🚀 ~ flatmapvuer userToken ~ state:", state)
       return state.userProfile.token
     },
   },
-  actions: {
-
-  },
-  persist: {
-
-  }
 })