@abi-software/flatmapvuer 0.5.9 → 0.6.0-vue3-0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/babel.config.js +0 -14
- package/dist/favicon.ico +0 -0
- package/dist/flatmapvuer.js +69542 -0
- package/dist/flatmapvuer.umd.cjs +1021 -0
- package/dist/index.html +17 -0
- package/dist/style.css +1 -0
- package/package.json +29 -21
- package/src/App.vue +180 -105
- package/src/assets/styles.scss +2 -3
- package/src/components/AnnotationTool.vue +193 -153
- package/src/components/EventBus.js +3 -3
- package/src/components/ExternalResourceCard.vue +39 -30
- package/src/components/FlatmapVuer.vue +734 -676
- package/src/components/MultiFlatmapVuer.vue +313 -246
- package/src/components/ProvenancePopup.vue +195 -121
- package/src/components/SelectionsGroup.vue +93 -84
- package/src/components/Tooltip.vue +11 -13
- package/src/components/TreeControls.vue +67 -64
- package/src/components/index.js +4 -7
- package/src/components/legends/DynamicLegends.vue +13 -19
- package/src/components/legends/SvgLegends.vue +72 -27
- package/src/components.d.ts +46 -0
- package/src/icons/flatmap-marker.js +1 -1
- package/src/icons/fonts/mapicon-species.eot +0 -0
- package/src/icons/fonts/mapicon-species.svg +0 -0
- package/src/icons/yellowstar.js +2 -2
- package/src/legends/legend.svg +0 -0
- package/src/main.js +2 -6
- package/src/services/flatmapQueries.js +175 -139
- package/vite.config.js +76 -0
- package/vue.config.js +14 -0
- package/CHANGELOG.md +0 -402
- package/dist/demo.html +0 -10
- package/dist/flatmapvuer.common.js +0 -22741
- package/dist/flatmapvuer.common.js.map +0 -1
- package/dist/flatmapvuer.css +0 -1
- package/dist/flatmapvuer.umd.js +0 -22751
- package/dist/flatmapvuer.umd.js.map +0 -1
- package/dist/flatmapvuer.umd.min.js +0 -4
- package/dist/flatmapvuer.umd.min.js.map +0 -1
- package/package-lock.json +0 -18473
package/package.json
CHANGED
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@@ -1,8 +1,7 @@
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{
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"name": "@abi-software/flatmapvuer",
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"version": "0.
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"version": "0.6.0-vue3-0",
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"license": "Apache-2.0",
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"main": "./dist/flatmapvuer.common.js",
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"files": [
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"dist/*",
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"src/*",
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},
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"scripts": {
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"start": "vue-cli-service serve",
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"serve": "
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"serve": "vite --host",
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"build": "vue-cli-service build --dest test_html --mode staging",
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"build-bundle": "
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"build-bundle": "vite build",
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"lint": "vue-cli-service lint",
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"release:beta": "npm version prerelease --preid=beta; npm publish --tag beta",
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"release:minor": "npm version minor; npm publish",
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"changelog": "auto-changelog -p --output CHANGELOG.md --template keepachangelog",
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"version": "npm run build-bundle;npm run changelog; git add CHANGELOG.md"
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},
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"type": "module",
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"main": "./dist/flatmapvuer.umd.cjs",
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"module": "./dist/flatmapvuer.js",
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"exports": {
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".": {
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"import": "./dist/flatmapvuer.js",
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"require": "./dist/flatmapvuer.umd.cjs"
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},
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"./dist/style.css": "./dist/style.css"
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},
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"dependencies": {
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"@abi-software/flatmap-viewer": "^2.4.3",
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"@abi-software/sparc-annotation": "0.0.5",
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"@abi-software/svg-sprite": "^0.3.0",
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"
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"@element-plus/icons-vue": "^2.3.1",
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"@vue/compat": "^3.3.13",
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"core-js": "^3.6.5",
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"css-element-queries": "^1.2.2",
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"current-script-polyfill": "^1.0.0",
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"element-
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"element-plus": "^2.4.4",
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"file-loader": "^5.0.2",
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"lodash": "^4.17.21",
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"
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"mitt": "^3.0.1",
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"unocss": "^0.58.0",
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"unplugin-vue-components": "^0.26.0",
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"vue": "^3.3.13",
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"vue3-component-svg-sprite": "^0.0.1"
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},
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"devDependencies": {
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"@
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"@vue/
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"@vue/cli-service": "^4.5.13",
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"@vitejs/plugin-vue": "^4.6.2",
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"@vue/compiler-sfc": "^3.3.13",
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"auto-changelog": "^2.4.0",
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"babel-eslint": "^10.0
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"babel-eslint": "^10.1.0",
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"babel-plugin-component": "^1.1.1",
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"base64-inline-loader": "^2.0.1",
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"eslint": "^
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"eslint-plugin-vue": "^
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"
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"
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"vue-template-compiler": "^2.6.10",
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"eslint": "^8.56.0",
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"eslint-plugin-vue": "^9.19.2",
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"sass": "^1.69.5",
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"vite": "^5.0.10",
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"webpack-node-externals": "^2.5.2"
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},
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"eslintConfig": {
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"parser": "babel-eslint"
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}
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},
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"postcss": {
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"plugins": {
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"autoprefixer": {}
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}
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},
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"browserslist": [
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"> 1%",
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"last 2 versions"
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package/src/App.vue
CHANGED
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@@ -3,161 +3,233 @@
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<el-popover
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placement="bottom"
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trigger="click"
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width=500
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width="500"
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class="popover"
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:
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:teleported="false"
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>
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<div class="options-container">
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<el-row :gutter="20">
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<el-button @click="helpMode = !helpMode" size="
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<el-
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<el-button @click="helpMode = !helpMode" size="small"
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>Help Mode</el-button
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>
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<el-button @click="saveSettings()" size="small"
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>Save Settings</el-button
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>
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<el-button
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:disabled="mapSettings.length === 0"
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@click="restoreSettings()"
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size="small"
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>Restore Settings</el-button
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>
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<el-autocomplete
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class="search-box"
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placeholder="Search"
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v-model="searchText"
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:fetch-suggestions="fetchSuggestions"
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@keyup.enter.native="search"
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@select="search"
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popper-class="autocomplete-popper"
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popper-class="autocomplete-popper"
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:teleported="false"
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>
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</el-autocomplete>
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</el-row>
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</div>
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<
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<template #reference>
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<el-button class="options-button" :icon="ElIconSetting"
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>Options</el-button>
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</template>
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</el-popover>
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<MultiFlatmapVuer
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@
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<MultiFlatmapVuer
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ref="multi"
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:availableSpecies="availableSpecies"
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@resource-selected="FlatmapSelected"
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:minZoom="minZoom"
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@pan-zoom-callback="panZoomcallback"
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@open-map="openMap"
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@ready="FlatmapReady"
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:featureInfo="featureInfo"
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:searchable="searchable"
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:layerControl="layerControl"
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:initial="initial"
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:
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:initial="initial"
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:pathControls="pathControls"
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:helpMode="helpMode"
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:displayMinimap="true"
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:enableOpenMapUI="true"
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:flatmapAPI="flatmapAPI"
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/>
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</div>
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</template>
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<script>
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import { shallowRef } from 'vue';
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import { Setting as ElIconSetting } from '@element-plus/icons-vue'
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/* eslint-disable no-alert, no-console */
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import Vue from "vue";
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import MultiFlatmapVuer from './components/MultiFlatmapVuer.vue'
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import {
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Autocomplete,
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Button,
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Col,
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Popover,
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Row,
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} from 'element-
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import
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Vue.use(Autocomplete);
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Vue.use(Button);
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Vue.use(Col);
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Vue.use(Popover);
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Vue.use(Row);
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ElAutocomplete as Autocomplete,
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ElButton as Button,
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ElCol as Col,
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ElPopover as Popover,
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ElRow as Row,
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} from 'element-plus'
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import './icons/mapicon-species-style.css'
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export default {
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name: 'app',
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components: {
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Autocomplete,
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Button,
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Col,
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ElIconSetting,
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Popover,
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Row,
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},
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methods: {
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saveSettings: function() {
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this.mapSettings.push(this.$refs.multi.getState())
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saveSettings: function () {
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this.mapSettings.push(this.$refs.multi.getState())
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},
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restoreSettings: function() {
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restoreSettings: function () {
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if (this.mapSettings.length > 0)
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this.$refs.multi.setState(this.mapSettings.pop())
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this.$refs.multi.setState(this.mapSettings.pop())
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},
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FlatmapSelected: function(resource) {
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if (resource.eventType ===
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console.log('resource', resource)
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FlatmapSelected: function (resource) {
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if (resource.eventType === 'click') {
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console.log('resource', resource)
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}
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},
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FlatmapReady: function(component) {
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console.log(component)
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let taxon = component.mapImp.describes
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let id = component.mapImp.addMarker(
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window.flatmapImp =
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component.enablePanZoomEvents(true)
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FlatmapReady: function (component) {
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console.log(component)
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let taxon = component.mapImp.describes
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let id = component.mapImp.addMarker('UBERON:0000948')
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window.flatmapImp = component.mapImp
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component.enablePanZoomEvents(true)
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//component.showPathwaysDrawer(false);
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console.log(taxon, id)
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console.log(taxon, id)
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//component.searchAndShowResult("heart");
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},
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panZoomcallback: function(payload) {
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panZoomcallback: function (payload) {
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this.payload = payload
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},
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openMap: function (map) {
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console.log(map)
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},
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fetchSuggestions: function(term, cb) {
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if (term ===
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cb([])
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fetchSuggestions: function (term, cb) {
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if (term === '') {
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cb([])
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} else {
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const suggestions = []
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const results = this.$refs.multi
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const suggestions = []
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const results = this.$refs.multi
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.getCurrentFlatmap()
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.searchSuggestions(term)
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results.__featureIds.forEach((id) => {
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const annotation = this.$refs.multi
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.getCurrentFlatmap()
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.mapImp.annotation(id)
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if (annotation && annotation.label) suggestions.push(annotation.label)
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})
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const unique = new Set(suggestions)
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suggestions.length = 0
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for (const item of unique) {
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suggestions.push({
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suggestions.push({ value: '"' + item + '"' })
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}
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cb(suggestions)
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cb(suggestions)
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}
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},
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search: function() {
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search: function () {
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console.log(this.searchText)
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this.$refs.multi
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this.$refs.multi
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.getCurrentFlatmap()
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.searchAndShowResult(this.searchText, true)
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},
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},
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data: function(){
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data: function () {
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return {
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searchText:
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searchText: '',
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featureInfo: true,
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searchable: true,
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pathControls: true,
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layerControl: true,
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minZoom: 4,
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availableSpecies
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|
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|
|
121
|
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|
|
122
|
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|
|
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|
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|
|
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|
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|
|
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|
-
|
|
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|
-
|
|
127
|
-
|
|
128
|
-
|
|
154
|
+
availableSpecies: {
|
|
155
|
+
'Human Female': {
|
|
156
|
+
taxo: 'NCBITaxon:9606',
|
|
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|
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biologicalSex: 'PATO:0000383',
|
|
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|
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iconClass: 'mapicon-icon_human',
|
|
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|
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displayWarning: true,
|
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|
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},
|
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|
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'Human Male': {
|
|
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|
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taxo: 'NCBITaxon:9606',
|
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|
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biologicalSex: 'PATO:0000384',
|
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iconClass: 'mapicon-icon_human',
|
|
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|
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displayWarning: true,
|
|
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|
+
},
|
|
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|
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Rat: {
|
|
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|
+
taxo: 'NCBITaxon:10114',
|
|
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|
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iconClass: 'mapicon-icon_rat',
|
|
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|
+
displayWarning: true,
|
|
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|
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displayLatestChanges: true,
|
|
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|
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},
|
|
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|
+
'Rat (NPO)': {
|
|
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|
+
taxo: 'NCBITaxon:10116',
|
|
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|
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iconClass: 'mapicon-icon_rat',
|
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|
+
displayWarning: true,
|
|
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|
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displayLatestChanges: true,
|
|
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|
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},
|
|
179
|
+
Mouse: {
|
|
180
|
+
taxo: 'NCBITaxon:10090',
|
|
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|
+
iconClass: 'mapicon-icon_mouse',
|
|
182
|
+
displayWarning: true,
|
|
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|
+
},
|
|
184
|
+
Kember: { taxo: 'ABI:1000001', displayWarning: true },
|
|
185
|
+
Pig: {
|
|
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|
+
taxo: 'NCBITaxon:9823',
|
|
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|
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iconClass: 'mapicon-icon_pig',
|
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|
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displayWarning: true,
|
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|
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},
|
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|
+
Cat: {
|
|
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|
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taxo: 'NCBITaxon:9685',
|
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|
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iconClass: 'mapicon-icon_cat',
|
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displayWarning: true,
|
|
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|
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},
|
|
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|
+
Sample: { taxo: 'NCBITaxon:1', displayWarning: true },
|
|
196
|
+
'Functional Connectivity': {
|
|
197
|
+
taxo: 'FunctionalConnectivity',
|
|
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|
+
displayWarning: true,
|
|
199
|
+
},
|
|
129
200
|
},
|
|
130
201
|
tooltipContent: undefined,
|
|
131
202
|
tStyle: {
|
|
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|
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top:
|
|
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|
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left:
|
|
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|
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position:
|
|
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|
+
top: '200px',
|
|
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|
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left: '200px',
|
|
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|
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position: 'absolute',
|
|
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206
|
},
|
|
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|
displayCloseButton: false,
|
|
137
|
-
initial:
|
|
208
|
+
initial: 'Rat (NPO)',
|
|
138
209
|
helpMode: false,
|
|
139
210
|
mapSettings: [],
|
|
140
211
|
//flatmapAPI: "https://mapcore-demo.org/current/flatmap/v2/"
|
|
141
212
|
//flatmapAPI: "https://mapcore-demo.org/devel/flatmap/v3/"
|
|
142
213
|
//flatmapAPI: "https://mapcore-demo.org/current/flatmap/v3/"
|
|
143
|
-
flatmapAPI:
|
|
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|
+
flatmapAPI: 'https://mapcore-demo.org/devel/flatmap/v4/',
|
|
144
215
|
//flatmapAPI: "https://mapcore-demo.org/fccb/flatmap/"
|
|
145
216
|
//flatmapAPI: "https://mapcore-demo.org/staging/flatmap/v1/"
|
|
146
|
-
// flatmapAPI: "https://mapcore-demo.org/devel/flatmap/v1/"
|
|
217
|
+
// flatmapAPI: "https://mapcore-demo.org/devel/flatmap/v1/",
|
|
218
|
+
ElIconSetting: shallowRef(ElIconSetting)
|
|
147
219
|
}
|
|
148
220
|
},
|
|
149
221
|
components: {
|
|
150
222
|
MultiFlatmapVuer,
|
|
151
|
-
}
|
|
223
|
+
},
|
|
152
224
|
}
|
|
153
225
|
</script>
|
|
154
226
|
|
|
155
227
|
<style lang="scss">
|
|
156
|
-
@
|
|
157
|
-
@
|
|
158
|
-
@
|
|
159
|
-
@
|
|
160
|
-
@
|
|
228
|
+
@use 'element-plus/theme-chalk/src/autocomplete';
|
|
229
|
+
@use 'element-plus/theme-chalk/src/button';
|
|
230
|
+
@use 'element-plus/theme-chalk/src/col';
|
|
231
|
+
@use 'element-plus/theme-chalk/src/popover';
|
|
232
|
+
@use 'element-plus/theme-chalk/src/row';
|
|
161
233
|
|
|
162
234
|
#app {
|
|
163
235
|
font-family: 'Asap', 'Avenir', Helvetica, Arial, sans-serif;
|
|
@@ -165,22 +237,22 @@ export default {
|
|
|
165
237
|
-moz-osx-font-smoothing: grayscale;
|
|
166
238
|
text-align: center;
|
|
167
239
|
color: #2c3e50;
|
|
168
|
-
height:100%;
|
|
240
|
+
height: 100%;
|
|
169
241
|
width: 100%;
|
|
170
|
-
position:absolute;
|
|
242
|
+
position: absolute;
|
|
171
243
|
}
|
|
172
244
|
|
|
173
245
|
.maplibregl-ctrl-top-left .maplibregl-ctrl {
|
|
174
|
-
margin-top:120px;
|
|
246
|
+
margin-top: 120px;
|
|
175
247
|
}
|
|
176
248
|
|
|
177
249
|
.search-box {
|
|
178
250
|
margin-top: 2px;
|
|
179
|
-
height:28px;
|
|
180
|
-
|
|
251
|
+
height: 28px;
|
|
252
|
+
:deep(.el-input__inner) {
|
|
181
253
|
background-color: $background;
|
|
182
|
-
height:28px;
|
|
183
|
-
line-height:28px;
|
|
254
|
+
height: 28px;
|
|
255
|
+
line-height: 28px;
|
|
184
256
|
border: 1px solid rgb(144, 147, 153);
|
|
185
257
|
border-radius: 4px;
|
|
186
258
|
&:focus {
|
|
@@ -189,9 +261,9 @@ export default {
|
|
|
189
261
|
}
|
|
190
262
|
}
|
|
191
263
|
|
|
192
|
-
|
|
193
|
-
min-width:137px!important;
|
|
194
|
-
width: auto!important;
|
|
264
|
+
:deep(.autocomplete-popper) {
|
|
265
|
+
min-width: 137px !important;
|
|
266
|
+
width: auto !important;
|
|
195
267
|
}
|
|
196
268
|
|
|
197
269
|
body {
|
|
@@ -199,14 +271,14 @@ body {
|
|
|
199
271
|
}
|
|
200
272
|
|
|
201
273
|
.maplibregl-ctrl-top-left .maplibregl-ctrl {
|
|
202
|
-
margin-top:120px;
|
|
274
|
+
margin-top: 120px;
|
|
203
275
|
}
|
|
204
276
|
|
|
205
|
-
.popover{
|
|
206
|
-
top:5px;
|
|
207
|
-
right:calc(
|
|
208
|
-
position:absolute;
|
|
209
|
-
z-index:1000;
|
|
277
|
+
.popover {
|
|
278
|
+
top: 5px;
|
|
279
|
+
right: calc(50% - 20px);
|
|
280
|
+
position: absolute;
|
|
281
|
+
z-index: 1000;
|
|
210
282
|
}
|
|
211
283
|
|
|
212
284
|
.el-row {
|
|
@@ -216,13 +288,16 @@ body {
|
|
|
216
288
|
}
|
|
217
289
|
}
|
|
218
290
|
|
|
219
|
-
.options-
|
|
291
|
+
.options-button {
|
|
292
|
+
z-index:100;
|
|
293
|
+
position: absolute;
|
|
294
|
+
}
|
|
220
295
|
|
|
296
|
+
.options-container {
|
|
221
297
|
text-align: center;
|
|
222
298
|
}
|
|
223
299
|
|
|
224
300
|
.el-tabs__content {
|
|
225
|
-
height:100%;
|
|
301
|
+
height: 100%;
|
|
226
302
|
}
|
|
227
|
-
|
|
228
303
|
</style>
|
package/src/assets/styles.scss
CHANGED
|
@@ -1,7 +1,6 @@
|
|
|
1
|
-
@import url('https://fonts.googleapis.com/css?family=Asap:400,400i,500,600,700&display=swap');
|
|
2
1
|
|
|
3
2
|
@import '_variables';
|
|
4
3
|
|
|
5
|
-
|
|
4
|
+
@import url('https://fonts.googleapis.com/css?family=Asap:400,400i,500,600,700&display=swap');
|
|
5
|
+
|
|
6
6
|
$--color-primary: $app-primary-color !default;
|
|
7
|
-
$--font-path: '~element-ui/lib/theme-chalk/fonts';
|