@abi-software/flatmapvuer 0.5.9-fccb.3 → 0.5.10

package/src/components/ProvenancePopup.vue

@@ -1,432 +1,422 @@
-<template>
-  <el-main v-if="entry" class="main" v-loading="loading">
-    <div class="block" v-if="entry.title">
-      <span class="title">{{capitalise(entry.title)}}</span>
-      <div v-if="entry.provenanceTaxonomyLabel && entry.provenanceTaxonomyLabel.length > 0" class="subtitle">
-        {{provSpeciesDescription}}
-      </div>
-      <el-button @click="showConnectedPaths">
-        Show connected paths
-      </el-button>
-    </div>
-    <div class="block" v-else>
-      <span class="title">{{entry.featureId}}</span>
-    </div>
-    <div v-show="showDetails" class="hide" @click="showDetails = false">
-        Hide path information
-        <i class="el-icon-arrow-up"></i>
-      </div>
-      <div v-show="!showDetails" class="hide" @click="showDetails = true">
-        Show path information
-        <i class="el-icon-arrow-down"></i>
-      </div>
-    <transition name="slide-fade">
-      <div v-show="showDetails" class="content-container scrollbar">
-        {{entry.paths}}
-        <div v-if="entry.origins && entry.origins.length > 0" class="block">
-          <div>
-            <span class="attribute-title">Origin</span>
-            <el-popover
-            width="250"
-            trigger="hover"
-            :append-to-body=false
-            popper-class="popover-origin-help"
-            >
-            <i slot="reference" class="el-icon-warning-outline info"/>
-            <span style="word-break: keep-all;">
-              <i>Origin</i> {{originDescription}}
-            </span>
-            </el-popover>
-          </div>
-          <div v-for="(origin, i) in entry.origins" class="attribute-content"  :key="origin">
-            {{ capitalise(origin) }}
-            <div v-if="i != entry.origins.length - 1" class="seperator"></div>
-          </div>
-          <el-button v-show="entry.originsWithDatasets && entry.originsWithDatasets.length > 0" class="button" @click="openDendrites">
-            Explore origin data
-          </el-button>
-        </div>
-        <div v-if="entry.components && entry.components.length > 0" class="block">
-          <div class="attribute-title">Components</div>
-          <div v-for="(component, i) in entry.components" class="attribute-content"  :key="component">
-            {{ capitalise(component) }}
-            <div v-if="i != entry.components.length - 1" class="seperator"></div>
-          </div>
-        </div>
-        <div v-if="entry.destinations && entry.destinations.length > 0" class="block">
-          <div>
-            <span class="attribute-title">Destination</span>
-            <el-popover
-            width="250"
-            trigger="hover"
-            :append-to-body=false
-            popper-class="popover-origin-help"
-            >
-            <i slot="reference" class="el-icon-warning-outline info"/>
-            <span style="word-break: keep-all;">
-            <i>Destination</i> is where the axons terminate
-            </span>
-            </el-popover>
-          </div>
-          <div v-for="(destination, i) in entry.destinations" class="attribute-content"  :key="destination">
-            {{ capitalise(destination) }}
-            <div v-if="i != entry.destinations.length - 1" class="seperator"></div>
-          </div>
-          <el-button v-show="entry.destinationsWithDatasets && entry.destinationsWithDatasets.length > 0" class="button" @click="openAxons">
-            Explore destination data
-          </el-button>
-        </div>
-
-        <el-button v-show="entry.componentsWithDatasets && entry.componentsWithDatasets.length > 0" class="button" @click="openAll">
-          Search for data on components
-        </el-button>
-
-        <external-resource-card :resources="resources"></external-resource-card>
-
-      </div>
-    </transition>
-  </el-main>
-</template>
-
-
-<script>
-/* eslint-disable no-alert, no-console */
-import Vue from "vue";
-import {
-  Button,
-  Container,
-  Icon,
-  Main
-} from "element-ui";
-import lang from "element-ui/lib/locale/lang/en";
-import locale from "element-ui/lib/locale";
-locale.use(lang);
-Vue.use(Button);
-Vue.use(Container);
-Vue.use(Icon);
-Vue.use(Main);
-
-import EventBus from './EventBus'
-import ExternalResourceCard from './ExternalResourceCard.vue';
-
-const titleCase = (str) => {
-  return str.replace(/\w\S*/g, (t) => { return t.charAt(0).toUpperCase() + t.substr(1).toLowerCase() });
-}
-
-const capitalise = function(str){
-  if (str)
-    return str.charAt(0).toUpperCase() + str.slice(1)
-  return ""
-}
-
-export default {
-  components: { ExternalResourceCard },
-  name: "ProvenancePopup",
-  props: { 
-    entry: {
-      type: Object,
-      default: () => ({
-        destinations: [], 
-        origins: [],
-        components: [],
-        destinationsWithDatasets: [],
-        originsWithDatasets: [],
-        componentsWithDatasets: [],
-        resource: undefined
-      })
-    },
-  },
-  data: function() {
-    return {
-      controller: undefined,
-      activeSpecies: undefined,
-      appendToBody: false,
-      pubmedSearchUrl: '',
-      loading: false,
-      showToolip: false,
-      showDetails: false,
-      originDescriptions: {
-        'motor': 'is the location of the initial cell body of the circuit',
-        'sensory': 'is the location of the initial cell body in the PNS circuit'
-      },
-      componentsWithDatasets: [],
-      uberons: [{id: undefined, name: undefined}]
-    };
-  },
-  computed: {
-    resources: function(){
-      let resources = []
-      if(this.entry && this.entry.hyperlinks){
-        resources = this.entry.hyperlinks
-      }
-      return resources
-    },
-    originDescription: function(){
-      if(this.entry && this.entry.title && this.entry.title.toLowerCase().includes('motor')){
-        return this.originDescriptions.motor
-      } else {
-        return this.originDescriptions.sensory
-      }
-    },
-    provSpeciesDescription: function(){
-      let text = "Observed in"
-      this.entry.provenanceTaxonomyLabel.forEach(label => {
-        text += ` ${label},`
-      });
-      text = text.slice(0,-1) // remove last comma
-      text += " species"
-      return text
-    }
-  },
-  methods: {
-    titleCase: function(title){
-      return titleCase(title)
-    },
-    showConnectedPaths(){
-      this.$emit('highlightConnectedPaths', this.entry.featureId)
-      this.$emit('onClose')
-    },
-    capitalise: function(text){
-      return capitalise(text)
-    },
-    onClose: function() {
-      this.$emit("onClose")
-    },
-    openUrl: function(url){
-      window.open(url, '_blank')
-    },
-    openAll: function(){
-      EventBus.$emit('onActionClick', {type:'Facets', labels: this.entry.componentsWithDatasets.map(a=>a.name)})
-    },
-    openAxons: function(){
-      EventBus.$emit('onActionClick', {type:'Facets', labels: this.entry.destinationsWithDatasets.map(a=>a.name)})
-    },
-    openDendrites: function(){
-      EventBus.$emit('onActionClick', {type:'Facets', labels: this.entry.originsWithDatasets.map(a=>a.name)})
-    },
-    pubmedSearchUrlUpdate: function (val){
-      this.pubmedSearchUrl = val
-    },
-  }
-};
-</script>
-
-<style scoped lang="scss">
-@import "~element-ui/packages/theme-chalk/src/button";
-@import "~element-ui/packages/theme-chalk/src/container";
-@import "~element-ui/packages/theme-chalk/src/header";
-@import "~element-ui/packages/theme-chalk/src/main";
-
-.display {
-  width: 44px;
-  word-break: normal;
-}
-
-.title {
-  text-align: left;
-  width: 16em;
-  line-height: 1.5em !important;
-  font-size: 1em;
-  font-family: Helvetica;
-  font-weight: 500;
-  /* font-weight: bold; */
-  padding-bottom: 8px;
-}
-
-.block {
-  margin-bottom: 0.5em;
-}
-
-.pub {
-  width: 16rem;
-}
-
-.icon {
-  right: 0px;
-  position: absolute;
-  top: 10px;
-}
-
-.icon:hover {
-  cursor: pointer;
-}
-
-.popover-origin-help {
-  text-transform: none !important; // need to overide the tooltip text transform
-}
-
-.info{
-  transform: rotate(180deg);
-  color: #8300bf;
-  margin-left: 8px;
-}
-
-.seperator {
-  width:90%;
-  height:1px;
-  background-color:#bfbec2;
-}
-
-.hide{
-  color: $app-primary-color;
-  cursor: pointer;
-  margin-right: 6px;
-  margin-top: 3px;
-}
-
-.slide-fade-enter-active {
-  transition: opacity 0.5s, transform 0.5s;
-}
-.slide-fade-leave-active {
-  transition: opacity 0.2s, transform 0.2s;
-}
-.slide-fade-enter, .slide-fade-leave-to /* .slide-fade-leave-active in <2.1.8 */ {
-  opacity: 0;
-  transform: translateY(-8px);
-}
-
-.main {
-  font-size: 14px;
-  text-align: left;
-  line-height: 1.5em;
-  font-family: Asap, sans-serif,Helvetica;
-  font-weight: 400;
-  /* outline: thin red solid; */
-  padding: 1em !important;
-  overflow: hidden;
-  min-width: 16rem;
-}
-
-.title{
-  font-size: 18px;
-  font-weight: 500;
-  font-weight: bold;
-  padding-bottom: 8px;
-  color: rgb(131, 0, 191);
-}
-
-.attribute-title{
-  font-size: 16px;
-  font-weight: 600;
-  /* font-weight: bold; */
-  text-transform: uppercase;
-}
-
-.attribute-content{
-  font-size: 14px;
-  font-weight: 500;
-}
-
-.popover-container {
-  height: 100%;
-  width: 100%;
-}
-
-.main {
-  .el-button.is-round{
-    border-radius: 4px;
-    padding: 9px 20px 10px 20px;
-    display: flex;
-    height: 36px;
-  }
-}
-
-.button {
-  margin-left: 0px !important;
-  margin-top: 0px !important;
-  font-size: 14px !important;
-  background-color: $app-primary-color;
-  color: #fff;
-  &+.button {
-    margin-top: 10px !important;
-  }
-  &:hover {
-    color: #fff !important;
-    background: #ac76c5 !important;
-    border: 1px solid #ac76c5 !important;
-  }
-}
-
-.tooltip-container{
-  &::after, &::before {
-    content: '';
-    display: block;
-    position: absolute;
-    width: 0;
-    height: 0;
-    border-style: solid;
-    flex-shrink: 0;
-  }
-  .tooltip {
-    &::after {
-      display: none;
-    }
-    &::before {
-      display: none;
-    }
-  }
-}
-
-.maplibregl-popup-anchor-bottom {
-  .tooltip-container {
-    &::after, &::before {
-      top: 100%;
-      border-width: 12px;
-    }
-    &::after {
-      margin-top:-1px;
-      border-color: rgb(255, 255, 255) transparent transparent  transparent ;
-    }
-    &::before {
-      margin: 0 auto;
-      border-color: $app-primary-color  transparent  transparent transparent ;
-    }
-  }
-}
-
-.maplibregl-popup-anchor-top {
-  .tooltip-container {
-    &::after, &::before {
-      top: -24px;
-      border-width: 12px;
-    }
-    &::after {
-      margin-top: 1px;
-      border-color: transparent transparent rgb(255, 255, 255) transparent ;
-    }
-    &::before {
-      margin: 0 auto;
-      border-color: transparent transparent $app-primary-color transparent ;
-    }
-  }
-}
-
-.content-container {
-  overflow-y: scroll;
-  scrollbar-width: thin !important;
-  max-height: 240px;
-}
-
-.scrollbar::-webkit-scrollbar-track {
-  border-radius: 10px;
-  background-color: #f5f5f5;
-}
-
-.scrollbar::-webkit-scrollbar {
-  width: 12px;
-  right: -12px;
-  background-color: #f5f5f5;
-}
-
-.scrollbar::-webkit-scrollbar-thumb {
-  border-radius: 4px;
-  box-shadow: 0 2px 4px 0 rgba(0, 0, 0, 0.06);
-  background-color: #979797;
-}
-
-
-/* Fix for chrome bug where under triangle pops up above one on top of it  */
-.selector:not(*:root), .tooltip-container::after{
-  top: 99.4%;
-}
-</style>
+<template>
+  <el-main v-if="entry" class="main" v-loading="loading">
+    <div class="block" v-if="entry.title">
+      <span class="title">{{capitalise(entry.title)}}</span>
+      <div v-if="entry.provenanceTaxonomyLabel && entry.provenanceTaxonomyLabel.length > 0" class="subtitle">
+        {{provSpeciesDescription}}
+      </div>
+    </div>
+    <div class="block" v-else>
+      <span class="title">{{entry.featureId}}</span>
+    </div>
+    <div v-show="showDetails" class="hide" @click="showDetails = false">
+        Hide path information
+        <i class="el-icon-arrow-up"></i>
+      </div>
+      <div v-show="!showDetails" class="hide" @click="showDetails = true">
+        Show path information
+        <i class="el-icon-arrow-down"></i>
+      </div>
+    <transition name="slide-fade">
+      <div v-show="showDetails" class="content-container scrollbar">
+        {{entry.paths}}
+        <div v-if="entry.origins && entry.origins.length > 0" class="block">
+          <div>
+            <span class="attribute-title">Origin</span>
+            <el-popover
+            width="250"
+            trigger="hover"
+            :append-to-body=false
+            popper-class="popover-origin-help"
+            >
+            <i slot="reference" class="el-icon-warning-outline info"/>
+            <span style="word-break: keep-all;">
+              <i>Origin</i> {{originDescription}}
+            </span>
+            </el-popover>
+          </div>
+          <div v-for="(origin, i) in entry.origins" class="attribute-content"  :key="origin">
+            {{ capitalise(origin) }}
+            <div v-if="i != entry.origins.length - 1" class="seperator"></div>
+          </div>
+          <el-button v-show="entry.originsWithDatasets && entry.originsWithDatasets.length > 0" class="button" @click="openDendrites">
+            Explore origin data
+          </el-button>
+        </div>
+        <div v-if="entry.components && entry.components.length > 0" class="block">
+          <div class="attribute-title">Components</div>
+          <div v-for="(component, i) in entry.components" class="attribute-content"  :key="component">
+            {{ capitalise(component) }}
+            <div v-if="i != entry.components.length - 1" class="seperator"></div>
+          </div>
+        </div>
+        <div v-if="entry.destinations && entry.destinations.length > 0" class="block">
+          <div>
+            <span class="attribute-title">Destination</span>
+            <el-popover
+            width="250"
+            trigger="hover"
+            :append-to-body=false
+            popper-class="popover-origin-help"
+            >
+            <i slot="reference" class="el-icon-warning-outline info"/>
+            <span style="word-break: keep-all;">
+            <i>Destination</i> is where the axons terminate
+            </span>
+            </el-popover>
+          </div>
+          <div v-for="(destination, i) in entry.destinations" class="attribute-content"  :key="destination">
+            {{ capitalise(destination) }}
+            <div v-if="i != entry.destinations.length - 1" class="seperator"></div>
+          </div>
+          <el-button v-show="entry.destinationsWithDatasets && entry.destinationsWithDatasets.length > 0" class="button" @click="openAxons">
+            Explore destination data
+          </el-button>
+        </div>
+
+        <el-button v-show="entry.componentsWithDatasets && entry.componentsWithDatasets.length > 0" class="button" @click="openAll">
+          Search for data on components
+        </el-button>
+
+        <external-resource-card :resources="resources"></external-resource-card>
+
+      </div>
+    </transition>
+  </el-main>
+</template>
+
+
+<script>
+/* eslint-disable no-alert, no-console */
+import Vue from "vue";
+import {
+  Button,
+  Container,
+  Icon,
+  Main
+} from "element-ui";
+import lang from "element-ui/lib/locale/lang/en";
+import locale from "element-ui/lib/locale";
+locale.use(lang);
+Vue.use(Button);
+Vue.use(Container);
+Vue.use(Icon);
+Vue.use(Main);
+
+import EventBus from './EventBus'
+import ExternalResourceCard from './ExternalResourceCard.vue';
+
+const titleCase = (str) => {
+  return str.replace(/\w\S*/g, (t) => { return t.charAt(0).toUpperCase() + t.substr(1).toLowerCase() });
+}
+
+const capitalise = function(str){
+  if (str)
+    return str.charAt(0).toUpperCase() + str.slice(1)
+  return ""
+}
+
+export default {
+  components: { ExternalResourceCard },
+  name: "ProvenancePopup",
+  props: { 
+    entry: {
+      type: Object,
+      default: () => ({
+        destinations: [], 
+        origins: [],
+        components: [],
+        destinationsWithDatasets: [],
+        originsWithDatasets: [],
+        componentsWithDatasets: [],
+        resource: undefined
+      })
+    },
+  },
+  data: function() {
+    return {
+      controller: undefined,
+      activeSpecies: undefined,
+      appendToBody: false,
+      pubmedSearchUrl: '',
+      loading: false,
+      showToolip: false,
+      showDetails: false,
+      originDescriptions: {
+        'motor': 'is the location of the initial cell body of the circuit',
+        'sensory': 'is the location of the initial cell body in the PNS circuit'
+      },
+      componentsWithDatasets: [],
+      uberons: [{id: undefined, name: undefined}]
+    };
+  },
+  computed: {
+    resources: function(){
+      let resources = []
+      if(this.entry && this.entry.hyperlinks){
+        resources = this.entry.hyperlinks
+      }
+      return resources
+    },
+    originDescription: function(){
+      if(this.entry && this.entry.title && this.entry.title.toLowerCase().includes('motor')){
+        return this.originDescriptions.motor
+      } else {
+        return this.originDescriptions.sensory
+      }
+    },
+    provSpeciesDescription: function(){
+      let text = "Observed in"
+      this.entry.provenanceTaxonomyLabel.forEach(label => {
+        text += ` ${label},`
+      });
+      text = text.slice(0,-1) // remove last comma
+      text += " species"
+      return text
+    }
+  },
+  methods: {
+    titleCase: function(title){
+      return titleCase(title)
+    },
+    capitalise: function(text){
+      return capitalise(text)
+    },
+    openUrl: function(url){
+      window.open(url, '_blank')
+    },
+    openAll: function(){
+      EventBus.$emit('onActionClick', {type:'Facets', labels: this.entry.componentsWithDatasets.map(a=>a.name)})
+    },
+    openAxons: function(){
+      EventBus.$emit('onActionClick', {type:'Facets', labels: this.entry.destinationsWithDatasets.map(a=>a.name)})
+    },
+    openDendrites: function(){
+      EventBus.$emit('onActionClick', {type:'Facets', labels: this.entry.originsWithDatasets.map(a=>a.name)})
+    },
+    pubmedSearchUrlUpdate: function (val){
+      this.pubmedSearchUrl = val
+    },
+  }
+};
+</script>
+
+<style scoped lang="scss">
+@import "~element-ui/packages/theme-chalk/src/button";
+@import "~element-ui/packages/theme-chalk/src/container";
+@import "~element-ui/packages/theme-chalk/src/header";
+@import "~element-ui/packages/theme-chalk/src/main";
+
+.display {
+  width: 44px;
+  word-break: normal;
+}
+
+.title {
+  text-align: left;
+  width: 16em;
+  line-height: 1.5em !important;
+  font-size: 1em;
+  font-family: Helvetica;
+  font-weight: 500;
+  /* font-weight: bold; */
+  padding-bottom: 8px;
+}
+
+.block {
+  margin-bottom: 0.5em;
+}
+
+.pub {
+  width: 16rem;
+}
+
+.icon {
+  right: 0px;
+  position: absolute;
+  top: 10px;
+}
+
+.icon:hover {
+  cursor: pointer;
+}
+
+.popover-origin-help {
+  text-transform: none !important; // need to overide the tooltip text transform
+}
+
+.info{
+  transform: rotate(180deg);
+  color: #8300bf;
+  margin-left: 8px;
+}
+
+.seperator {
+  width:90%;
+  height:1px;
+  background-color:#bfbec2;
+}
+
+.hide{
+  color: $app-primary-color;
+  cursor: pointer;
+  margin-right: 6px;
+  margin-top: 3px;
+}
+
+.slide-fade-enter-active {
+  transition: opacity 0.5s, transform 0.5s;
+}
+.slide-fade-leave-active {
+  transition: opacity 0.2s, transform 0.2s;
+}
+.slide-fade-enter, .slide-fade-leave-to /* .slide-fade-leave-active in <2.1.8 */ {
+  opacity: 0;
+  transform: translateY(-8px);
+}
+
+.main {
+  font-size: 14px;
+  text-align: left;
+  line-height: 1.5em;
+  font-family: Asap, sans-serif,Helvetica;
+  font-weight: 400;
+  /* outline: thin red solid; */
+  padding: 1em !important;
+  overflow: hidden;
+  min-width: 16rem;
+}
+
+.title{
+  font-size: 18px;
+  font-weight: 500;
+  font-weight: bold;
+  padding-bottom: 8px;
+  color: rgb(131, 0, 191);
+}
+
+.attribute-title{
+  font-size: 16px;
+  font-weight: 600;
+  /* font-weight: bold; */
+  text-transform: uppercase;
+}
+
+.attribute-content{
+  font-size: 14px;
+  font-weight: 500;
+}
+
+.popover-container {
+  height: 100%;
+  width: 100%;
+}
+
+.main {
+  .el-button.is-round{
+    border-radius: 4px;
+    padding: 9px 20px 10px 20px;
+    display: flex;
+    height: 36px;
+  }
+}
+
+.button {
+  margin-left: 0px !important;
+  margin-top: 0px !important;
+  font-size: 14px !important;
+  background-color: $app-primary-color;
+  color: #fff;
+  &+.button {
+    margin-top: 10px !important;
+  }
+  &:hover {
+    color: #fff !important;
+    background: #ac76c5 !important;
+    border: 1px solid #ac76c5 !important;
+  }
+}
+
+.tooltip-container{
+  &::after, &::before {
+    content: '';
+    display: block;
+    position: absolute;
+    width: 0;
+    height: 0;
+    border-style: solid;
+    flex-shrink: 0;
+  }
+  .tooltip {
+    &::after {
+      display: none;
+    }
+    &::before {
+      display: none;
+    }
+  }
+}
+
+.maplibregl-popup-anchor-bottom {
+  .tooltip-container {
+    &::after, &::before {
+      top: 100%;
+      border-width: 12px;
+    }
+    &::after {
+      margin-top:-1px;
+      border-color: rgb(255, 255, 255) transparent transparent  transparent ;
+    }
+    &::before {
+      margin: 0 auto;
+      border-color: $app-primary-color  transparent  transparent transparent ;
+    }
+  }
+}
+
+.maplibregl-popup-anchor-top {
+  .tooltip-container {
+    &::after, &::before {
+      top: -24px;
+      border-width: 12px;
+    }
+    &::after {
+      margin-top: 1px;
+      border-color: transparent transparent rgb(255, 255, 255) transparent ;
+    }
+    &::before {
+      margin: 0 auto;
+      border-color: transparent transparent $app-primary-color transparent ;
+    }
+  }
+}
+
+.content-container {
+  overflow-y: scroll;
+  scrollbar-width: thin !important;
+  max-height: 240px;
+}
+
+.scrollbar::-webkit-scrollbar-track {
+  border-radius: 10px;
+  background-color: #f5f5f5;
+}
+
+.scrollbar::-webkit-scrollbar {
+  width: 12px;
+  right: -12px;
+  background-color: #f5f5f5;
+}
+
+.scrollbar::-webkit-scrollbar-thumb {
+  border-radius: 4px;
+  box-shadow: 0 2px 4px 0 rgba(0, 0, 0, 0.06);
+  background-color: #979797;
+}
+
+
+/* Fix for chrome bug where under triangle pops up above one on top of it  */
+.selector:not(*:root), .tooltip-container::after{
+  top: 99.4%;
+}
+</style>