@abi-software/flatmapvuer 0.5.2 → 0.5.4

package/dist/flatmapvuer.umd.min.js

@@ -1,4 +1,4 @@
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Array.isArray(e.values)&&e.values.length>0?(t.urls=[t.pubmedSearchUrl(e.values.map((function(e){return t.stripPMIDPrefix(e[0])})))],!0):(t.urls=[],!1)}))},this.pubmedSearchUrl=function(e){var t="https://pubmed.ncbi.nlm.nih.gov/?",n=new URLSearchParams;return n.append("term",e),t+n.toString()}};q.a.use(B.a),k.a.use(w.a),k.a.use(S.a.directive),k.a.use(_.a),k.a.use(y.a),k.a.use(v.a);var Te=n("ae66"),Ee=function(){return{destinations:[],origins:[],components:[],destinationsWithDatasets:[],originsWithDatasets:[],componentsWithDatasets:[],resource:void 0}},Ie={name:"FlatmapVuer",components:{MapSvgIcon:he["MapSvgIcon"],MapSvgSpriteColor:he["MapSvgSpriteColor"],Tooltip:ie,SelectionsGroup:fe,SvgLegends:_e},beforeCreate:function(){this.mapManager=void 0,this.mapImp=void 0,this.setStateRequired=!1},methods:{viewLatestMap:function(){var e=this.biologicalSex?this.biologicalSex:void 0;"NCBITaxon:9606"===this.entry&&(e="PATO:0000384");var t={entry:this.entry,biologicalSex:e,viewport:this.mapImp.getState()};this.$emit("view-latest-map",t)},backgroundChangeCallback:function(e){this.currentBackground=e,this.mapImp&&this.mapImp.setBackgroundColour(this.currentBackground,1)},toggleDrawer:function(){this.drawerOpen=!this.drawerOpen},setColour:function(e){this.colourRadio=e,this.mapImp&&this.mapImp.setColour({colour:e,outline:this.outlinesRadio})},setOutlines:function(e){this.outlineRadio=e,this.mapImp&&this.mapImp.setColour({colour:this.colourRadio,outline:e})},resetView:function(){this.mapImp&&(this.mapImp.resetMap(),this.$refs.centrelinesSelection&&this.$refs.centrelinesSelection.reset(),this.$refs.skcanSelection&&this.$refs.skcanSelection.reset(),this.$refs.layersSelection&&this.$refs.layersSelection.reset(),this.$refs.systemsSelection&&this.$refs.pathwaysSelection.reset(),this.$refs.pathwaysSelection&&this.$refs.pathwaysSelection.reset())},zoomIn:function(){this.mapImp&&this.mapImp.zoomIn()},zoomOut:function(){this.mapImp&&this.mapImp.zoomOut()},centreLinesSelected:function(e){this.mapImp&&this.mapImp.enableCentrelines(e.value)},sckanSelected:function(e){this.mapImp&&this.mapImp.enableSckanPath(e.key,e.value)},checkAllSCKAN:function(e){var t=this;this.mapImp&&e.keys.forEach((function(n){return t.mapImp.enableSckanPath(n,e.value)}))},systemSelected:function(e){this.mapImp&&this.mapImp.enableSystem(e.key,e.value)},checkAllSystems:function(e){var t=this;this.mapImp&&e.keys.forEach((function(n){return t.mapImp.enableSystem(n,e.value)}))},layersSelected:function(e){this.mapImp&&this.mapImp.enableLayer(e.key,e.value)},checkAllLayers:function(e){var t=this;this.mapImp&&e.keys.forEach((function(n){return t.mapImp.enableLayer(n,e.value)}))},pathwaysSelected:function(e){this.mapImp&&this.mapImp.enablePath(e.key,e.value)},checkAllPathways:function(e){var t=this;this.mapImp&&e.keys.forEach((function(n){return t.mapImp.enablePath(n,e.value)}))},enablePanZoomEvents:function(e){this.mapImp.enablePanZoomEvents(e)},eventCallback:function(){var e=this;return function(t,n){if("pan-zoom"!==t){for(var i=n.label,o=[n.models],r=e.entry,s=e.biologicalSex,a=arguments.length,l=new Array(a>2?a-2:0),c=2;c<a;c++)l[c-2]=arguments[c];var u={dataset:n.dataset,biologicalSex:s,taxonomy:r,resource:o,label:i,feature:n,userData:l,eventType:t};n&&"marker"!==n.type&&"click"===t&&e.checkAndCreatePopups(u),e.$emit("resource-selected",u)}else e.$emit("pan-zoom-callback",n)}},checkAndCreatePopups:function(){var e=h(d().mark((function e(t){var n;return d().wrap((function(e){while(1)switch(e.prev=e.next){case 0:return e.next=2,this.flatmapQueries.retrieveFlatmapKnowledgeForEvent(t);case 2:n=e.sent,(n[0]||n[1]||t.feature.hyperlinks&&t.feature.hyperlinks.length>0)&&(this.resourceForTooltip=t.resource[0],this.createTooltipFromNeuronCuration(t));case 4:case"end":return e.stop()}}),e,this)})));function t(t){return e.apply(this,arguments)}return t}(),popUpCssHacks:function(){var e=document.querySelector(".flatmap-tooltip-popup");e&&(e.style.display="none"),document.querySelector(".maplibregl-popup-close-button").style.display="block",this.$refs.tooltip.$el.style.display="flex",document.querySelector(".maplibregl-popup-close-button").onclick=function(){document.querySelector(".flatmap-tooltip-popup").style.display="block"}},resourceSelected:function(e){this.$emit("resource-selected",e)},createTooltipFromNeuronCuration:function(e){this.tooltipEntry=this.flatmapQueries.createTooltipData(e),this.displayTooltip()},showPopup:function(e,t,n){var i=n;this.mapImp&&(i?i.className||(i.className="custom-popup"):i={className:"custom-popup",positionAtLastClick:!0},this.mapImp.showPopup(e,t,i))},showMarkerPopup:function(e,t,n){this.mapImp&&this.mapImp.showMarkerPopup(e,t,n)},closeMinimap:function(){var e=this.$refs.flatmapContainer.querySelector(".maplibregl-ctrl-minimap");this.minimapSmall?(e.classList.add("enlarge"),e.classList.remove("shrink")):(e.classList.add("shrink"),e.classList.remove("enlarge")),this.minimapSmall=!this.minimapSmall},addResizeButtonToMinimap:function(){var e=this.$refs.flatmapContainer.querySelector(".maplibregl-ctrl-minimap");e&&(this.$refs.minimapResize.parentNode.removeChild(this.$refs.minimapResize),e.appendChild(this.$refs.minimapResize),this.minimapResizeShow=!0)},setHelpMode:function(e){e?(this.inHelp=!0,this.hoverVisibilities.forEach((function(e){e.value=!0})),this.openFlatmapHelpPopup()):(this.inHelp=!1,this.hoverVisibilities.forEach((function(e){e.value=!1})),this.closeFlatmapHelpPopup())},showToolitip:function(e){var t=this;this.inHelp||(clearTimeout(this.tooltipWait[e]),this.tooltipWait[e]=setTimeout((function(){t.hoverVisibilities[e].value=!0}),500))},hideToolitip:function(e){var t=this;this.inHelp||(clearTimeout(this.tooltipWait[e]),this.tooltipWait[e]=setTimeout((function(){t.hoverVisibilities[e].value=!1}),500))},displayTooltip:function(){this.mapImp.showPopup(this.mapImp.modelFeatureIds(this.resourceForTooltip)[0],this.$refs.tooltip.$el,{className:"flatmapvuer-popover",positionAtLastClick:!0}),this.popUpCssHacks()},openFlatmapHelpPopup:function(){if(this.mapImp){var e=this.mapImp.featureIdsForModel("UBERON:0000948")[0],t="Click for more information";this.mapImp.showPopup(e,t,{anchor:"top",className:"flatmap-popup-popper"})}},closeFlatmapHelpPopup:function(){this.$el.querySelectorAll(".maplibregl-popup-close-button").forEach((function(e){e.click()}))},getLabels:function(){var e=[];if(this.mapImp){var t,n=this.mapImp.annotations,i=u(n.values());try{for(i.s();!(t=i.n()).done;){var o=t.value;o.label&&e.push(o.label)}}catch(r){i.e(r)}finally{i.f()}return Array.from(new Set(e))}},getState:function(){if(this.mapImp){var e={entry:this.entry,viewport:this.mapImp.getState()},t=this.mapImp.getIdentifier();return this.biologicalSex?e["biologicalSex"]=this.biologicalSex:t&&t.biologicalSex&&(e["biologicalSex"]=t.biologicalSex),t&&t.uuid&&(e["uuid"]=t.uuid),e}},setState:function(e){e&&(!this.mapImp||!e.entry||this.entry!=e.entry||e.biologicalSex&&e.biologicalSex!==this.biologicalSex?this.createFlatmap(e):e.viewport&&this.mapImp.setState(e.viewport),this.setStateRequired=!1)},restoreMapState:function(e){e&&(e.viewport&&this.mapImp.setState(e.viewport),e.searchTerm&&this.searchAndShowResult(e.searchTerm,!0))},createFlatmap:function(e){var t=this;if(this.mapImp||this.loading)e&&(this._stateToBeSet={viewport:e.viewport,searchTerm:e.searchTerm},this.mapImp&&!this.loading&&this.restoreMapState(this._stateToBeSet));else{this.loading=!0;var n=!1;this.displayMinimap&&(n={position:"top-right"});var i={taxon:this.entry};e?e.uuid?i={uuid:e.uuid}:e.entry&&(i.taxon=e.entry,e.biologicalSex?i["biologicalSex"]=e.biologicalSex:"NCBITaxon:9606"===i.taxon&&(i["biologicalSex"]="PATO:0000384")):this.biologicalSex&&(i["biologicalSex"]=this.biologicalSex);var o=this.mapManager.loadMap(i,this.$refs.display,this.eventCallback(),{featureInfo:this.featureInfo,"min-zoom":this.minZoom,layerControl:!0,pathControls:!0,searchable:this.searchable,tooltips:this.tooltips,minimap:n});o.then((function(n){t.mapImp=n,t.onFlatmapReady(),t._stateToBeSet?t.restoreMapState(t._stateToBeSet):t.restoreMapState(e)}))}},computePathControlsMaximumHeight:function(){var e=this.$refs.display;if(e){var t=getComputedStyle(e),n=parseInt(t.paddingTop)+parseInt(t.paddingBottom),i=e.clientHeight-n;this.pathwaysMaxHeight=i-170}},mapResize:function(){try{this.computePathControlsMaximumHeight(),this.mapImp&&(this.mapImp.resize(),this.showMinimap(this.displayMinimap),this.mapImp._minimap&&this.mapImp._minimap.resize())}catch(e){console.error("Map resize error")}},onFlatmapReady:function(){this.sensor=new Te(this.$refs.display,this.mapResize),this.mapImp.options&&"functional"===this.mapImp.options.style&&(this.isFC=!0),this.mapImp.setBackgroundOpacity(1),this.backgroundChangeCallback(this.currentBackground),this.pathways=this.mapImp.pathTypes(),this.mapImp.enableCentrelines(!1),this.systems=this.mapImp.getSystems(),this.addResizeButtonToMinimap(),this.loading=!1,this.computePathControlsMaximumHeight(),this.drawerOpen=!0,this.mapResize(),this.$emit("ready",this)},showMinimap:function(e){this.mapImp&&this.mapImp.showMinimap(e)},showPathwaysDrawer:function(e){this.drawerOpen=e},searchAndShowResult:function(e,t){if(this.mapImp){if(void 0===e||""===e)return this.mapImp.clearSearchResults(),!0;var n=this.mapImp.search(e);if(n&&n.results&&n.results.length>0){if(this.mapImp.showSearchResults(n),t&&n.results[0].featureId&&n.results[0].text){var i=this.mapImp.annotation(n.results[0].featureId);this.mapImp.showPopup(n.results[0].featureId,i.label,{className:"custom-popup",positionAtLastClick:!1,preserveSelection:!0})}return!0}this.mapImp.clearSearchResults()}return!1},searchSuggestions:function(e){return this.mapImp?this.mapImp.search(e):[]}},props:{entry:String,biologicalSex:{type:String,default:""},featureInfo:{type:Boolean,default:!1},minZoom:{type:Number,default:4},pathControls:{type:Boolean,default:!1},searchable:{type:Boolean,default:!1},layerControl:{type:Boolean,default:!1},tooltips:{type:Boolean,default:!0},helpMode:{type:Boolean,default:!1},renderAtMounted:{type:Boolean,default:!0},displayMinimap:{type:Boolean,default:!1},displayWarning:{type:Boolean,default:!1},isLegacy:{type:Boolean,default:!1},displayLatestChanges:{type:Boolean,default:!1},latestChangesMessage:{type:String,default:"Search now provide suggested terms. Add new legends. New tilesets. New female map. Improve upstream downstream information."},state:{type:Object,default:void 0},flatmapAPI:{type:String,default:"https://mapcore-demo.org/current/flatmap/v3/"},sparcAPI:{type:String,default:"https://api.sparc.science/"}},provide:function(){return{sparcAPI:this.sparcAPI,flatmapAPI:this.flatmapAPI}},data:function(){return{layers:[],pathways:[],sckanDisplay:[{label:"Display Path with SCKAN",key:"VALID"}],centreLines:[{label:"Display Nerves",key:"centrelines",enabled:!1}],systems:[],pathwaysMaxHeight:1e3,hoverVisibilities:[{value:!1},{value:!1},{value:!1},{value:!1},{value:!1},{value:!1},{value:!1},{value:!1}],isFC:!1,inHelp:!1,currentBackground:"white",availableBackground:["white","lightskyblue","black"],loading:!1,flatmapMarker:xe,tooltipEntry:Ee(),connectivityTooltipVisible:!1,resourceForTooltip:void 0,drawerOpen:!1,colourRadio:!0,outlinesRadio:!0,minimapResizeShow:!1,minimapSmall:!1}},watch:{entry:function(){this.state||this.createFlatmap()},helpMode:function(e){this.setHelpMode(e)},state:{handler:function(e){this.mapManager?this.setState(e):this.setStateRequired=!0},immediate:!0,deep:!0}},mounted:function(){var e=n("4979");this.tooltipWait=[],this.tooltipWait.length=this.hoverVisibilities.length,this.mapManager=new e.MapManager(this.flatmapAPI),this.flatmapQueries=new $e,this.flatmapQueries.initialise(this.sparcAPI,this.flatmapAPI),this.state?this.setStateRequired&&this.setState(this.state):this.renderAtMounted&&this.createFlatmap()}},Pe=Ie,Me=(n("4e5b"),X(Pe,s,a,!1,null,"37e16dd3",null)),Le=Me.exports,Ne=function(){var e=this,t=e._self._c;return t("div",{ref:"multiContainer",staticClass:"multi-container"},[t("div",{staticStyle:{position:"absolute","z-index":"10"}},[t("div",{staticClass:"species-display-text"},[e._v(" Species ")]),t("el-popover",{ref:"selectPopover",attrs:{content:"Select a species",placement:"right",appendToBody:!1,trigger:"manual","popper-class":"flatmap-popper right-popper"},model:{value:e.helpMode,callback:function(t){e.helpMode=t},expression:"helpMode"}}),t("el-select",{directives:[{name:"popover",rawName:"v-popover:selectPopover",arg:"selectPopover"}],staticClass:"select-box",attrs:{id:"flatmap-select","popper-append-to-body":e.appendToBody,placeholder:"Select","popper-class":"flatmap_dropdown"},on:{change:e.setSpecies},model:{value:e.activeSpecies,callback:function(t){e.activeSpecies=t},expression:"activeSpecies"}},e._l(e.speciesList,(function(n,i){return t("el-option",{key:i,attrs:{label:i,value:i}},[t("el-row",[t("el-col",{attrs:{span:8}},[t("i",{class:n.iconClass})]),t("el-col",{attrs:{span:12}},[e._v(e._s(i))])],1)],1)})),1)],1),e._l(e.speciesList,(function(n,i){return t("FlatmapVuer",{directives:[{name:"show",rawName:"v-show",value:e.activeSpecies==i,expression:"activeSpecies==key"}],key:i,ref:i,refInFor:!0,staticStyle:{height:"100%"},attrs:{showLayer:e.showLayer,entry:n.taxo,biologicalSex:n.biologicalSex,displayWarning:n.displayWarning,displayLatestChanges:n.displayLatestChanges,latestChangesMessage:n.latestChangesMessage,isLegacy:n.isLegacy,featureInfo:e.featureInfo,minZoom:e.minZoom,pathControls:e.pathControls,searchable:e.searchable,layerControl:e.layerControl,helpMode:e.helpMode,renderAtMounted:e.renderAtMounted,displayMinimap:e.displayMinimap,flatmapAPI:e.flatmapAPI,sparcAPI:e.sparcAPI},on:{"view-latest-map":e.viewLatestMap,"resource-selected":e.FlatmapSelected,ready:e.FlatmapReady,"pan-zoom-callback":e.panZoomCallback}})}))],2)},Ae=[],Fe=(n("06f1"),n("6ac9")),De=n.n(Fe),ze=(n("1f1a"),n("4e4b")),Be=n.n(ze),Re=(n("6611"),n("e772")),qe=n.n(Re);n("ea64");q.a.use(B.a),k.a.use(w.a),k.a.use(v.a),k.a.use(qe.a),k.a.use(Be.a),k.a.use(De.a);var Ve={"NCBITaxon:10114":"01fedbf9-d783-509c-a10c-827941ab13da","NCBITaxon:9823":"a336ac04-24db-561f-a25f-1c994fe17410","NCBITaxon:9606":"42ed6323-f645-5fbe-bada-9581819cf689","NCBITaxon:10090":"25285fab-48a0-5620-a6a0-f9a0374837d5","NCBITaxon:9685":"73060497-46a6-52bf-b975-cac511c127cb"},He={name:"MultiFlatmapVuer",components:{FlatmapVuer:Le},beforeMount:function(){this._resolveList=[],this._initialised=!1},mounted:function(){var e=this;this.initialise(),H.$on("onActionClick",(function(t){e.FlatmapSelected(t)}))},methods:{initialise:function(){var e=this;return new Promise((function(t){e.requireInitialisation?(e.requireInitialisation=!1,fetch(e.flatmapAPI).then((function(e){return e.json()})).then((function(n){Object.keys(e.availableSpecies).forEach((function(t){for(var i=0;i<n.length;i++)if(e.availableSpecies[t].taxo===n[i].taxon){if(!e.availableSpecies[t].biologicalSex){e.$set(e.speciesList,t,e.availableSpecies[t]);break}if(n[i].biologicalSex&&n[i].biologicalSex===e.availableSpecies[t].biologicalSex){e.$set(e.speciesList,t,e.availableSpecies[t]);break}}}));var i=e.initial;if(e.state){var o=e.state.state;i=o&&(o.uuid||o.entry)||!e.state.species?void 0:e.state.species}i&&(i&&void 0!==e.speciesList[i]?e.activeSpecies=i:e.activeSpecies=Object.keys(e.speciesList)[0],e.setSpecies(e.activeSpecies,e.state?e.state.state:void 0,5)),e._initialised=!0,t(),e._resolveList.forEach((function(e){e()}))}))):e._initialised?t():e._resolveList.push(t)}))},FlatmapSelected:function(e){this.$emit("resource-selected",e)},FlatmapReady:function(e){this.$emit("ready",e)},getCoordinatesOfLastClick:function(){var e=this.$refs[this.activeSpecies];if(e&&e[0])return e[0].getCoordinatesOfLastClick()},getCurrentFlatmap:function(){return this.$refs[this.activeSpecies][0]},panZoomCallback:function(e){this.$emit("pan-zoom-callback",e)},showPopup:function(e,t,n){var i=this.getCurrentFlatmap();i.showPopup(e,t,n)},showMarkerPopup:function(e,t,n){var i=this.getCurrentFlatmap();i.showMarkerPopup(e,t,n)},setSpecies:function(e,t,n){var i=this;if(this.$refs&&e in this.$refs)this.activeSpecies=e,this.$refs[this.activeSpecies][0].createFlatmap(t),this.$emit("flatmapChanged",this.activeSpecies);else if(n){var o=n-1;o>=0&&k.a.nextTick((function(){i.setSpecies(e,t,o)}))}},viewLatestMap:function(e){for(var t=Object.keys(this.speciesList),n=0;n<t.length;n++){var i=this.speciesList[t[n]];if(!i.isLegacy&&i.taxo===e.entry&&i.biologicalSex===e.biologicalSex)return void this.setSpecies(t[n],e,0)}},createLegacyEntry:function(e,t,n){if(n&&t){var i="Legacy";return e.species&&("Legacy"===e.species.slice(0,6)?i=e.species:i+=" ".concat(e.species)),this.$set(this.speciesList,i,{taxo:t,isLegacy:!0,displayWarning:!0}),{species:i,state:{entry:t,uuid:n,viewport:e.state.viewport,searchTerm:e.state.searchTerm}}}},updateState:function(e){var t=this;return new Promise((function(i){if(e&&e.state){var o=e.state;if(o.uuid){if(o.entry)return new Promise((function(){var r=new(n("4979").MapManager)(t.flatmapAPI),s={taxon:o.entry};o.biologicalSex&&(s["biologicalSex"]=o.biologicalSex),r.findMap_(s).then((function(n){if(n.uuid!==o.uuid)return t.createLegacyEntry(e,o.entry,o.uuid)})).then((function(t){i(t||e)})).catch((function(){i(e)}))}))}else if(o.entry){var r=o.entry in Ve?Ve[o.entry]:void 0,s=t.createLegacyEntry(e,o.entry,r);i(s||e)}}i(e)}))},getState:function(){var e={species:this.activeSpecies,state:void 0},t=this.getCurrentFlatmap();return e.state=t.getState(),e},setState:function(e){var 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e=this.$refs.flatmapContainer.querySelector(".maplibregl-ctrl-minimap");this.minimapSmall?(e.classList.add("enlarge"),e.classList.remove("shrink")):(e.classList.add("shrink"),e.classList.remove("enlarge")),this.minimapSmall=!this.minimapSmall},addResizeButtonToMinimap:function(){var e=this.$refs.flatmapContainer.querySelector(".maplibregl-ctrl-minimap");e&&(this.$refs.minimapResize.parentNode.removeChild(this.$refs.minimapResize),e.appendChild(this.$refs.minimapResize),this.minimapResizeShow=!0)},setHelpMode:function(e){e?(this.inHelp=!0,this.hoverVisibilities.forEach((function(e){e.value=!0})),this.openFlatmapHelpPopup()):(this.inHelp=!1,this.hoverVisibilities.forEach((function(e){e.value=!1})),this.closeFlatmapHelpPopup())},showToolitip:function(e){var t=this;this.inHelp||(clearTimeout(this.tooltipWait[e]),this.tooltipWait[e]=setTimeout((function(){t.hoverVisibilities[e].value=!0}),500))},hideToolitip:function(e){var t=this;this.inHelp||(clearTimeout(this.tooltipWait[e]),this.tooltipWait[e]=setTimeout((function(){t.hoverVisibilities[e].value=!1}),500))},displayTooltip:function(){this.mapImp.showPopup(this.mapImp.modelFeatureIds(this.resourceForTooltip)[0],this.$refs.tooltip.$el,{className:"flatmapvuer-popover",positionAtLastClick:!0}),this.popUpCssHacks()},openFlatmapHelpPopup:function(){if(this.mapImp){var e=this.mapImp.featureIdsForModel("UBERON:0000948")[0],t="Click for more information";this.mapImp.showPopup(e,t,{anchor:"top",className:"flatmap-popup-popper"})}},closeFlatmapHelpPopup:function(){this.$el.querySelectorAll(".maplibregl-popup-close-button").forEach((function(e){e.click()}))},getLabels:function(){var e=[];if(this.mapImp){var t,n=this.mapImp.annotations,i=u(n.values());try{for(i.s();!(t=i.n()).done;){var o=t.value;o.label&&e.push(o.label)}}catch(r){i.e(r)}finally{i.f()}return Array.from(new Set(e))}},getState:function(){if(this.mapImp){var e={entry:this.entry,viewport:this.mapImp.getState()},t=this.mapImp.getIdentifier();return this.biologicalSex?e["biologicalSex"]=this.biologicalSex:t&&t.biologicalSex&&(e["biologicalSex"]=t.biologicalSex),t&&t.uuid&&(e["uuid"]=t.uuid),e}},setState:function(e){e&&(!this.mapImp||!e.entry||this.entry!=e.entry||e.biologicalSex&&e.biologicalSex!==this.biologicalSex?this.createFlatmap(e):e.viewport&&this.mapImp.setState(e.viewport),this.setStateRequired=!1)},restoreMapState:function(e){e&&(e.viewport&&this.mapImp.setState(e.viewport),e.searchTerm&&this.searchAndShowResult(e.searchTerm,!0))},createFlatmap:function(e){var t=this;if(this.mapImp||this.loading)e&&(this._stateToBeSet={viewport:e.viewport,searchTerm:e.searchTerm},this.mapImp&&!this.loading&&this.restoreMapState(this._stateToBeSet));else{this.loading=!0;var n=!1;this.displayMinimap&&(n={position:"top-right"});var i={taxon:this.entry};e?e.uuid?i={uuid:e.uuid}:e.entry&&(i.taxon=e.entry,e.biologicalSex?i["biologicalSex"]=e.biologicalSex:"NCBITaxon:9606"===i.taxon&&(i["biologicalSex"]="PATO:0000384")):this.biologicalSex&&(i["biologicalSex"]=this.biologicalSex);var o=this.mapManager.loadMap(i,this.$refs.display,this.eventCallback(),{featureInfo:this.featureInfo,"min-zoom":this.minZoom,layerControl:!0,pathControls:!0,searchable:this.searchable,tooltips:this.tooltips,minimap:n});o.then((function(n){t.mapImp=n,t.onFlatmapReady(),t._stateToBeSet?t.restoreMapState(t._stateToBeSet):t.restoreMapState(e)}))}},computePathControlsMaximumHeight:function(){var e=this.$refs.display;if(e){var t=getComputedStyle(e),n=parseInt(t.paddingTop)+parseInt(t.paddingBottom),i=e.clientHeight-n;this.pathwaysMaxHeight=i-170}},mapResize:function(){try{this.computePathControlsMaximumHeight(),this.mapImp&&(this.mapImp.resize(),this.showMinimap(this.displayMinimap),this.mapImp._minimap&&this.mapImp._minimap.resize())}catch(e){console.error("Map resize error")}},onFlatmapReady:function(){this.sensor=new Te(this.$refs.display,this.mapResize),this.mapImp.options&&"functional"===this.mapImp.options.style&&(this.isFC=!0),this.mapImp.setBackgroundOpacity(1),this.backgroundChangeCallback(this.currentBackground),this.pathways=this.mapImp.pathTypes(),this.mapImp.enableCentrelines(!1),this.systems=this.mapImp.getSystems(),this.addResizeButtonToMinimap(),this.loading=!1,this.computePathControlsMaximumHeight(),this.drawerOpen=!0,this.mapResize(),this.$emit("ready",this)},showMinimap:function(e){this.mapImp&&this.mapImp.showMinimap(e)},showPathwaysDrawer:function(e){this.drawerOpen=e},searchAndShowResult:function(e,t){if(this.mapImp){if(void 0===e||""===e)return this.mapImp.clearSearchResults(),!0;var n=this.mapImp.search(e);if(n&&n.results&&n.results.length>0){if(this.mapImp.showSearchResults(n),t&&n.results[0].featureId&&n.results[0].text){var i=this.mapImp.annotation(n.results[0].featureId);this.mapImp.showPopup(n.results[0].featureId,i.label,{className:"custom-popup",positionAtLastClick:!1,preserveSelection:!0})}return!0}this.mapImp.clearSearchResults()}return!1},searchSuggestions:function(e){return this.mapImp?this.mapImp.search(e):[]}},props:{entry:String,biologicalSex:{type:String,default:""},featureInfo:{type:Boolean,default:!1},minZoom:{type:Number,default:4},pathControls:{type:Boolean,default:!1},searchable:{type:Boolean,default:!1},layerControl:{type:Boolean,default:!1},tooltips:{type:Boolean,default:!0},helpMode:{type:Boolean,default:!1},renderAtMounted:{type:Boolean,default:!0},displayMinimap:{type:Boolean,default:!1},displayWarning:{type:Boolean,default:!1},isLegacy:{type:Boolean,default:!1},displayLatestChanges:{type:Boolean,default:!1},latestChangesMessage:{type:String,default:"Search now provide suggested terms. Add new legends. New tilesets. New female map. Improve upstream downstream information."},state:{type:Object,default:void 0},flatmapAPI:{type:String,default:"https://mapcore-demo.org/current/flatmap/v3/"},sparcAPI:{type:String,default:"https://api.sparc.science/"}},provide:function(){return{sparcAPI:this.sparcAPI,flatmapAPI:this.flatmapAPI}},data:function(){return{layers:[],pathways:[],sckanDisplay:[{label:"Display Path with SCKAN",key:"VALID"}],centreLines:[{label:"Display Nerves",key:"centrelines",enabled:!1}],systems:[],pathwaysMaxHeight:1e3,hoverVisibilities:[{value:!1},{value:!1},{value:!1},{value:!1},{value:!1},{value:!1},{value:!1},{value:!1}],isFC:!1,inHelp:!1,currentBackground:"white",availableBackground:["white","lightskyblue","black"],loading:!1,flatmapMarker:xe,tooltipEntry:Ee(),connectivityTooltipVisible:!1,resourceForTooltip:void 0,drawerOpen:!1,colourRadio:!0,outlinesRadio:!0,minimapResizeShow:!1,minimapSmall:!1}},watch:{entry:function(){this.state||this.createFlatmap()},helpMode:function(e){this.setHelpMode(e)},state:{handler:function(e){this.mapManager?this.setState(e):this.setStateRequired=!0},immediate:!0,deep:!0}},mounted:function(){var e=n("4979");this.tooltipWait=[],this.tooltipWait.length=this.hoverVisibilities.length,this.mapManager=new e.MapManager(this.flatmapAPI),this.flatmapQueries=new $e,this.flatmapQueries.initialise(this.flatmapAPI),this.state?this.setStateRequired&&this.setState(this.state):this.renderAtMounted&&this.createFlatmap()}},Pe=Ie,Me=(n("8036"),X(Pe,s,a,!1,null,"f189c580",null)),Le=Me.exports,Ne=function(){var e=this,t=e._self._c;return t("div",{ref:"multiContainer",staticClass:"multi-container"},[t("div",{staticStyle:{position:"absolute","z-index":"10"}},[t("div",{staticClass:"species-display-text"},[e._v(" Species ")]),t("el-popover",{ref:"selectPopover",attrs:{content:"Select a species",placement:"right",appendToBody:!1,trigger:"manual","popper-class":"flatmap-popper right-popper"},model:{value:e.helpMode,callback:function(t){e.helpMode=t},expression:"helpMode"}}),t("el-select",{directives:[{name:"popover",rawName:"v-popover:selectPopover",arg:"selectPopover"}],staticClass:"select-box",attrs:{id:"flatmap-select","popper-append-to-body":e.appendToBody,placeholder:"Select","popper-class":"flatmap_dropdown"},on:{change:e.setSpecies},model:{value:e.activeSpecies,callback:function(t){e.activeSpecies=t},expression:"activeSpecies"}},e._l(e.speciesList,(function(n,i){return t("el-option",{key:i,attrs:{label:i,value:i}},[t("el-row",[t("el-col",{attrs:{span:8}},[t("i",{class:n.iconClass})]),t("el-col",{attrs:{span:12}},[e._v(e._s(i))])],1)],1)})),1)],1),e._l(e.speciesList,(function(n,i){return t("FlatmapVuer",{directives:[{name:"show",rawName:"v-show",value:e.activeSpecies==i,expression:"activeSpecies==key"}],key:i,ref:i,refInFor:!0,staticStyle:{height:"100%"},attrs:{showLayer:e.showLayer,entry:n.taxo,biologicalSex:n.biologicalSex,displayWarning:n.displayWarning,displayLatestChanges:n.displayLatestChanges,latestChangesMessage:n.latestChangesMessage,isLegacy:n.isLegacy,featureInfo:e.featureInfo,minZoom:e.minZoom,pathControls:e.pathControls,searchable:e.searchable,layerControl:e.layerControl,helpMode:e.helpMode,renderAtMounted:e.renderAtMounted,displayMinimap:e.displayMinimap,flatmapAPI:e.flatmapAPI,sparcAPI:e.sparcAPI},on:{"view-latest-map":e.viewLatestMap,"resource-selected":e.FlatmapSelected,ready:e.FlatmapReady,"pan-zoom-callback":e.panZoomCallback}})}))],2)},Ae=[],Fe=(n("06f1"),n("6ac9")),De=n.n(Fe),ze=(n("1f1a"),n("4e4b")),Be=n.n(ze),Re=(n("6611"),n("e772")),qe=n.n(Re);n("ea64");q.a.use(B.a),k.a.use(w.a),k.a.use(v.a),k.a.use(qe.a),k.a.use(Be.a),k.a.use(De.a);var Ve={"NCBITaxon:10114":"01fedbf9-d783-509c-a10c-827941ab13da","NCBITaxon:9823":"a336ac04-24db-561f-a25f-1c994fe17410","NCBITaxon:9606":"42ed6323-f645-5fbe-bada-9581819cf689","NCBITaxon:10090":"25285fab-48a0-5620-a6a0-f9a0374837d5","NCBITaxon:9685":"73060497-46a6-52bf-b975-cac511c127cb"},He={name:"MultiFlatmapVuer",components:{FlatmapVuer:Le},beforeMount:function(){this._resolveList=[],this._initialised=!1},mounted:function(){var e=this;this.initialise(),H.$on("onActionClick",(function(t){e.FlatmapSelected(t)}))},methods:{initialise:function(){var e=this;return new Promise((function(t){e.requireInitialisation?(e.requireInitialisation=!1,fetch(e.flatmapAPI).then((function(e){return e.json()})).then((function(n){Object.keys(e.availableSpecies).forEach((function(t){for(var i=0;i<n.length;i++)if(e.availableSpecies[t].taxo===n[i].taxon){if(!e.availableSpecies[t].biologicalSex){e.$set(e.speciesList,t,e.availableSpecies[t]);break}if(n[i].biologicalSex&&n[i].biologicalSex===e.availableSpecies[t].biologicalSex){e.$set(e.speciesList,t,e.availableSpecies[t]);break}}}));var i=e.initial;if(e.state){var o=e.state.state;i=o&&(o.uuid||o.entry)||!e.state.species?void 0:e.state.species}i&&(i&&void 0!==e.speciesList[i]?e.activeSpecies=i:e.activeSpecies=Object.keys(e.speciesList)[0],e.setSpecies(e.activeSpecies,e.state?e.state.state:void 0,5)),e._initialised=!0,t(),e._resolveList.forEach((function(e){e()}))}))):e._initialised?t():e._resolveList.push(t)}))},FlatmapSelected:function(e){this.$emit("resource-selected",e)},FlatmapReady:function(e){this.$emit("ready",e)},getCoordinatesOfLastClick:function(){var e=this.$refs[this.activeSpecies];if(e&&e[0])return e[0].getCoordinatesOfLastClick()},getCurrentFlatmap:function(){return this.$refs[this.activeSpecies][0]},panZoomCallback:function(e){this.$emit("pan-zoom-callback",e)},showPopup:function(e,t,n){var i=this.getCurrentFlatmap();i.showPopup(e,t,n)},showMarkerPopup:function(e,t,n){var i=this.getCurrentFlatmap();i.showMarkerPopup(e,t,n)},setSpecies:function(e,t,n){var i=this;if(this.$refs&&e in this.$refs)this.activeSpecies=e,this.$refs[this.activeSpecies][0].createFlatmap(t),this.$emit("flatmapChanged",this.activeSpecies);else if(n){var o=n-1;o>=0&&k.a.nextTick((function(){i.setSpecies(e,t,o)}))}},viewLatestMap:function(e){for(var t=Object.keys(this.speciesList),n=0;n<t.length;n++){var i=this.speciesList[t[n]];if(!i.isLegacy&&i.taxo===e.entry&&i.biologicalSex===e.biologicalSex)return void this.setSpecies(t[n],e,0)}},createLegacyEntry:function(e,t,n){if(n&&t){var i="Legacy";return e.species&&("Legacy"===e.species.slice(0,6)?i=e.species:i+=" ".concat(e.species)),this.$set(this.speciesList,i,{taxo:t,isLegacy:!0,displayWarning:!0}),{species:i,state:{entry:t,uuid:n,viewport:e.state.viewport,searchTerm:e.state.searchTerm}}}},updateState:function(e){var t=this;return new Promise((function(i){if(e&&e.state){var o=e.state;if(o.uuid){if(o.entry)return new Promise((function(){var r=new(n("4979").MapManager)(t.flatmapAPI),s={taxon:o.entry};o.biologicalSex&&(s["biologicalSex"]=o.biologicalSex),r.findMap_(s).then((function(n){if(n.uuid!==o.uuid)return t.createLegacyEntry(e,o.entry,o.uuid)})).then((function(t){i(t||e)})).catch((function(){i(e)}))}))}else if(o.entry){var r=o.entry in Ve?Ve[o.entry]:void 0,s=t.createLegacyEntry(e,o.entry,r);i(s||e)}}i(e)}))},getState:function(){var e={species:this.activeSpecies,state:void 0},t=this.getCurrentFlatmap();return e.state=t.getState(),e},setState:function(e){var t=this;e&&this.updateState(e).then((function(e){t.initialise().then((function(){if(e.species&&e.species!==t.activeSpecies)t.setSpecies(e.species,e.state,5);else if(e.state){var n=t.getCurrentFlatmap();n.setState(e.state)}}))}))},resourceSelected:function(e){this.$emit("resource-selected",e)}},props:{showLayer:{type:Boolean,default:!1},featureInfo:{type:Boolean,default:!1},pathControls:{type:Boolean,default:!0},searchable:{type:Boolean,default:!1},layerControl:{type:Boolean,default:!1},initial:{type:String,default:""},minZoom:{type:Number,default:4},renderAtMounted:{type:Boolean,default:!1},helpMode:{type:Boolean,default:!1},displayMinimap:{type:Boolean,default:!1},availableSpecies:{type:Object,default:function(){return{"Human Female":{taxo:"NCBITaxon:9606",biologicalSex:"PATO:0000383",iconClass:"mapicon-icon_human",displayWarning:!0},"Human Male":{taxo:"NCBITaxon:9606",biologicalSex:"PATO:0000384",iconClass:"mapicon-icon_human",displayWarning:!0},Rat:{taxo:"NCBITaxon:10114",iconClass:"mapicon-icon_rat",displayLatestChanges:!0},Mouse:{taxo:"NCBITaxon:10090",iconClass:"mapicon-icon_mouse",displayWarning:!0},Pig:{taxo:"NCBITaxon:9823",iconClass:"mapicon-icon_pig",displayWarning:!0},Cat:{taxo:"NCBITaxon:9685",iconClass:"mapicon-icon_cat",displayWarning:!0}}}},state:{type:Object,default:void 0},flatmapAPI:{type:String,default:"https://mapcore-demo.org/current/flatmap/v3/"},sparcAPI:{type:String,default:"https://api.sparc.science/"}},data:function(){return{activeSpecies:void 0,appendToBody:!1,speciesList:{},requireInitialisation:!0}},watch:{state:{handler:function(e){this.setState(e)},immediate:!0,deep:!0}}},We=He,Ue=(n("5054"),X(We,Ne,Ae,!1,null,"0732c3a0",null)),Ge=Ue.exports},fd22:function(e,t){e.exports=require("core-js/modules/es.string.includes.js")},fe07:function(e,t,n){}})}));
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