@abi-software/flatmapvuer 0.5.2 → 0.5.4-fccb-0

package/src/services/flatmapQueries.js

@@ -4,6 +4,34 @@ const removeDuplicates = function(arrayOfAnything){
   return [...new Set(arrayOfAnything.map(e => JSON.stringify(e)))].map(e => JSON.parse(e)) 
 }
 
+const cachedLabels = {};
+
+const findTaxonomyLabel = async function(flatmapAPI, taxonomy){
+  if (cachedLabels && cachedLabels.hasOwnProperty(taxonomy)) {
+    return cachedLabels[taxonomy];
+  }
+
+  return new Promise(resolve=>{
+    fetch(`${flatmapAPI}knowledge/label/${taxonomy}`, {
+      method: 'GET',
+    })
+    .then(response => response.json())
+    .then(data => {
+      let label = data.label;
+      if (label === "Mammalia") {
+        label = "Mammalia not otherwise specified";
+      }
+      cachedLabels[taxonomy] = label;
+      resolve(label);
+    })
+    .catch((error) => {
+      console.error('Error:', error);
+      cachedLabels[taxonomy] = taxonomy;
+      resolve(taxonomy);
+    })
+  });
+}
+
 const inArray = function(ar1, ar2){
   let as1 = JSON.stringify(ar1)
   let as2 = JSON.stringify(ar2)
@@ -12,8 +40,7 @@ const inArray = function(ar1, ar2){
 
 let FlatmapQueries = function(){
 
-  this.initialise  = function(sparcAPI, flatmapApi){
-    this.sparcAPI = sparcAPI
+  this.initialise  = function(flatmapApi){
     this.flatmapApi = flatmapApi
     this.destinations = []
     this.origins = []
@@ -21,21 +48,25 @@ let FlatmapQueries = function(){
     this.uberons = []
     this.urls = []
     this.controller = undefined
-    this.getOrganCuries().then(uberons=>{
-      this.uberons = uberons
-      this.createLabelLookup(uberons).then(lookUp=>{
-        this.lookUp = lookUp
-      })
-    })
+    this.uberons = []
+    this.lookUp = []
   }
 
-  this.createTooltipData = function (eventData) {
+  this.createTooltipData = async function (eventData) {
     let hyperlinks = []
     if (eventData.feature.hyperlinks && eventData.feature.hyperlinks.length > 0) {
       hyperlinks = eventData.feature.hyperlinks
     } else {
       hyperlinks = this.urls.map(url=>({url: url, id: "pubmed"}))
     }
+    let taxonomyLabel = undefined;
+    if (eventData.provenanceTaxonomy) {
+      taxonomyLabel = [];
+      for (let i = 0; eventData.provenanceTaxonomy.length > i; i++) {
+        taxonomyLabel.push(await findTaxonomyLabel(this.flatmapAPI, eventData.provenanceTaxonomy[i]))
+      }
+    }
+
     let tooltipData = {
       destinations: this.destinations, 
       origins: this.origins,
@@ -46,20 +77,12 @@ let FlatmapQueries = function(){
       title: eventData.label,
       featureId: eventData.resource,
       hyperlinks: hyperlinks,
+      provenanceTaxonomy: eventData.provenanceTaxonomy,
+      provenanceTaxonomyLabel: taxonomyLabel
     }
     return tooltipData
   }
 
-  this.getOrganCuries = function(){
-    return new Promise(resolve=> {
-    fetch(`${this.sparcAPI}get-organ-curies/`)
-      .then(response=>response.json())
-      .then(data=>{
-        resolve(data.uberon.array)
-      })
-    })
-  }
-
   this.createComponentsLabelList = function(components, lookUp){
     let labelList = []
     components.forEach(n=>{
@@ -131,7 +154,8 @@ let FlatmapQueries = function(){
         found.push(n)
       }
     })
-    return [... new Set(found.flat())]
+    this.uberons = [... new Set(found.flat())]
+    return this.uberons
   }
 
   this.flattenConntectivity = function (connectivity) {
@@ -385,4 +409,4 @@ let FlatmapQueries = function(){
   }
 }
 
-export {FlatmapQueries}
+export {FlatmapQueries, findTaxonomyLabel}