@abi-software/flatmapvuer 0.4.2 → 0.4.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +201 -201
- package/README.md +105 -105
- package/babel.config.js +14 -14
- package/dist/flatmapvuer.common.js +74 -69
- package/dist/flatmapvuer.common.js.map +1 -1
- package/dist/flatmapvuer.umd.js +74 -69
- package/dist/flatmapvuer.umd.js.map +1 -1
- package/dist/flatmapvuer.umd.min.js +1 -1
- package/dist/flatmapvuer.umd.min.js.map +1 -1
- package/package-lock.json +14228 -14228
- package/package.json +72 -72
- package/public/index.html +17 -17
- package/src/App.vue +221 -221
- package/src/assets/_variables.scss +43 -43
- package/src/assets/styles.scss +7 -7
- package/src/components/EventBus.js +2 -2
- package/src/components/ExternalResourceCard.vue +98 -98
- package/src/components/FlatmapVuer.vue +1627 -1627
- package/src/components/MultiFlatmapVuer.vue +509 -509
- package/src/components/SelectionsGroup.vue +248 -248
- package/src/components/Tooltip.vue +405 -405
- package/src/components/index.js +9 -9
- package/src/components/legends/DynamicLegends.vue +112 -112
- package/src/components/legends/SvgLegends.vue +66 -66
- package/src/icons/fonts/mapicon-species.eot +0 -0
- package/src/icons/fonts/mapicon-species.svg +14 -14
- package/src/icons/fonts/mapicon-species.ttf +0 -0
- package/src/icons/fonts/mapicon-species.woff +0 -0
- package/src/icons/mapicon-species-style.css +42 -42
- package/src/legends/legend.svg +25 -25
- package/src/main.js +8 -8
- package/src/nerve-map.js +99 -0
- package/src/services/flatmapQueries.js +384 -380
- package/vue.config.js +31 -31
package/package.json
CHANGED
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{
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"name": "@abi-software/flatmapvuer",
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"version": "0.4.
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"license": "Apache-2.0",
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"main": "./dist/flatmapvuer.common.js",
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"files": [
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"dist/*",
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"src/*",
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"public/*",
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"*.json",
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"*.js"
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],
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"repository": {
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"type": "git",
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"url": "https://github.com/ABI-Software/flatmapvuer.git"
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},
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"scripts": {
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"start": "vue-cli-service serve",
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"serve": "vue-cli-service serve --port 8082",
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"build": "vue-cli-service build --dest test_html --mode staging",
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"build-bundle": "vue-cli-service build --target lib --name flatmapvuer ./src/components/index.js",
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"lint": "vue-cli-service lint"
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},
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"dependencies": {
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"@abi-software/flatmap-viewer": "^2.3.3-b.4",
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"@abi-software/svg-sprite": "^0.1.14",
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"core-js": "^3.3.2",
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"css-element-queries": "^1.2.2",
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"current-script-polyfill": "^1.0.0",
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"element-ui": "^2.13.0",
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"file-loader": "^5.0.2",
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"lodash": "^4.17.21",
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"vue": "^2.6.10"
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},
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"devDependencies": {
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"@vue/cli-plugin-babel": "^4.0.0",
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"@vue/cli-plugin-eslint": "^4.0.0",
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"@vue/cli-service": "^4.5.13",
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"babel-eslint": "^10.0.3",
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"babel-plugin-component": "^1.1.1",
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"base64-inline-loader": "^2.0.1",
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"eslint": "^5.16.0",
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"eslint-plugin-vue": "^5.0.0",
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"node-sass": "^4.14.1",
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"sass-loader": "^8.0.2",
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"vue-template-compiler": "^2.6.10",
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"webpack-node-externals": "^2.5.2"
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},
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"eslintConfig": {
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"root": true,
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"env": {
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"node": true
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},
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"extends": [
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"plugin:vue/essential",
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"eslint:recommended"
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],
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"rules": {},
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"parserOptions": {
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"parser": "babel-eslint"
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}
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},
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"postcss": {
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"plugins": {
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"autoprefixer": {}
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}
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},
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"browserslist": [
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"> 1%",
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"last 2 versions"
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]
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}
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{
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"name": "@abi-software/flatmapvuer",
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"version": "0.4.4",
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"license": "Apache-2.0",
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"main": "./dist/flatmapvuer.common.js",
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"files": [
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"dist/*",
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"src/*",
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"public/*",
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"*.json",
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"*.js"
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],
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"repository": {
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"type": "git",
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"url": "https://github.com/ABI-Software/flatmapvuer.git"
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},
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"scripts": {
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"start": "vue-cli-service serve",
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"serve": "vue-cli-service serve --port 8082",
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"build": "vue-cli-service build --dest test_html --mode staging",
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"build-bundle": "vue-cli-service build --target lib --name flatmapvuer ./src/components/index.js",
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"lint": "vue-cli-service lint"
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},
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"dependencies": {
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"@abi-software/flatmap-viewer": "^2.3.3-b.4",
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"@abi-software/svg-sprite": "^0.1.14",
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"core-js": "^3.3.2",
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"css-element-queries": "^1.2.2",
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"current-script-polyfill": "^1.0.0",
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"element-ui": "^2.13.0",
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"file-loader": "^5.0.2",
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"lodash": "^4.17.21",
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"vue": "^2.6.10"
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},
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"devDependencies": {
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"@vue/cli-plugin-babel": "^4.0.0",
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"@vue/cli-plugin-eslint": "^4.0.0",
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"@vue/cli-service": "^4.5.13",
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"babel-eslint": "^10.0.3",
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"babel-plugin-component": "^1.1.1",
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"base64-inline-loader": "^2.0.1",
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"eslint": "^5.16.0",
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"eslint-plugin-vue": "^5.0.0",
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"node-sass": "^4.14.1",
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"sass-loader": "^8.0.2",
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"vue-template-compiler": "^2.6.10",
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"webpack-node-externals": "^2.5.2"
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},
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"eslintConfig": {
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"root": true,
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"env": {
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"node": true
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},
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"extends": [
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"plugin:vue/essential",
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"eslint:recommended"
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],
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"rules": {},
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"parserOptions": {
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"parser": "babel-eslint"
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}
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},
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"postcss": {
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"plugins": {
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"autoprefixer": {}
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}
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},
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"browserslist": [
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"> 1%",
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"last 2 versions"
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]
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}
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package/public/index.html
CHANGED
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<!DOCTYPE html>
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<html lang="en">
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<head>
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<meta charset="utf-8">
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<meta http-equiv="X-UA-Compatible" content="IE=edge">
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<meta name="viewport" content="width=device-width,initial-scale=1.0">
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<link rel="icon" href="<%= BASE_URL %>favicon.ico">
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<title>flatmapvuer</title>
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</head>
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<body>
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<noscript>
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<strong>We're sorry but scaffoldvuer doesn't work properly without JavaScript enabled. Please enable it to continue.</strong>
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</noscript>
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<div id="app"></div>
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<!-- built files will be auto injected -->
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</body>
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</html>
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<!DOCTYPE html>
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<html lang="en">
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<head>
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<meta charset="utf-8">
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<meta http-equiv="X-UA-Compatible" content="IE=edge">
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<meta name="viewport" content="width=device-width,initial-scale=1.0">
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<link rel="icon" href="<%= BASE_URL %>favicon.ico">
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<title>flatmapvuer</title>
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</head>
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<body>
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<noscript>
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<strong>We're sorry but scaffoldvuer doesn't work properly without JavaScript enabled. Please enable it to continue.</strong>
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</noscript>
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<div id="app"></div>
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<!-- built files will be auto injected -->
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</body>
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</html>
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package/src/App.vue
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<template>
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<div id="app">
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<el-popover
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placement="bottom"
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trigger="click"
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width=500
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class="popover"
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:appendToBody=false
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>
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<div class="options-container">
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<el-row :gutter="20">
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<el-button @click="helpMode = !helpMode" size="mini">Help Mode</el-button>
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<el-button @click="saveSettings()" size="mini">Save Settings</el-button>
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<el-button :disabled="mapSettings.length === 0" @click="restoreSettings()" size="mini">Restore Settings</el-button>
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<el-autocomplete class="search-box" placeholder="Search"
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v-model="searchText"
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:fetch-suggestions="fetchSuggestions"
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@keyup.enter.native="search"
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@select="search"
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popper-class="autocomplete-popper">
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</el-autocomplete>
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</el-row>
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</div>
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<el-button class="options-button" icon="el-icon-setting" slot="reference">Options</el-button>
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</el-popover>
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<MultiFlatmapVuer ref="multi" :availableSpecies="availableSpecies"
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@resource-selected="FlatmapSelected" :minZoom="minZoom"
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@pan-zoom-callback="panZoomcallback"
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@ready="FlatmapReady" :featureInfo="featureInfo" :searchable="searchable"
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:layerControl="layerControl"
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:initial="initial" :pathControls="pathControls" :helpMode="helpMode"
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:displayMinimap="true" :flatmapAPI="flatmapAPI"/>
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</div>
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</template>
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<script>
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/* eslint-disable no-alert, no-console */
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import Vue from "vue";
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import MultiFlatmapVuer from './components/MultiFlatmapVuer.vue'
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import {
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Autocomplete,
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Button,
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Col,
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Popover,
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Row,
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} from 'element-ui';
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import "./icons/mapicon-species-style.css";
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Vue.use(Autocomplete);
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Vue.use(Button);
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Vue.use(Col);
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Vue.use(Popover);
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Vue.use(Row);
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export default {
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name: 'app',
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methods: {
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saveSettings: function() {
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this.mapSettings.push(this.$refs.multi.getState());
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},
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restoreSettings: function() {
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if (this.mapSettings.length > 0)
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this.$refs.multi.setState(this.mapSettings.pop());
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},
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FlatmapSelected: function(resource) {
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if (resource.eventType === "click") {
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console.log('resource', resource);
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}
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},
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FlatmapReady: function(component) {
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console.log(component);
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let taxon = component.mapImp.describes;
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let id = component.mapImp.addMarker("UBERON:0000948");
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component.enablePanZoomEvents(true);
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//component.showPathwaysDrawer(false);
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console.log(taxon, id);
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//component.searchAndShowResult("heart");
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},
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panZoomcallback: function(payload) {
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this.payload = payload
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},
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fetchSuggestions: function(term, cb) {
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if (term === "") {
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cb([]);
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} else {
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const suggestions = [];
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const results = this.$refs.multi.getCurrentFlatmap().searchSuggestions(term);
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results.__featureIds.forEach(id => {
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const annotation = this.$refs.multi.getCurrentFlatmap().mapImp.annotation(id);
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if (annotation && annotation.label)
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suggestions.push(annotation.label);
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});
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const unique = new Set(suggestions);
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suggestions.length = 0;
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for (const item of unique) {
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suggestions.push({"value": "\"" + item +"\""});
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}
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cb(suggestions);
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}
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},
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search: function() {
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console.log(this.searchText)
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this.$refs.multi.getCurrentFlatmap().searchAndShowResult(this.searchText, true);
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}
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},
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data: function(){
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return {
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searchText: "",
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featureInfo: true,
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searchable: true,
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pathControls: true,
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layerControl: true,
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minZoom: 4,
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availableSpecies : {
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"Human Female":{taxo: "NCBITaxon:9606", biologicalSex: "PATO:0000383", iconClass:"mapicon-icon_human", displayWarning:true},
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"Human Male":{taxo: "NCBITaxon:9606", biologicalSex: "PATO:0000384", iconClass:"mapicon-icon_human", displayWarning:true},
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"Rat":{taxo: "NCBITaxon:10114", iconClass:"mapicon-icon_rat", displayWarning:false, displayLatestChanges:true},
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"Mouse":{taxo: "NCBITaxon:10090", iconClass:"mapicon-icon_mouse", displayWarning:true},
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"Kember":{taxo: "ABI:1000001", displayWarning:true},
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"Pig":{taxo: "NCBITaxon:9823", iconClass:"mapicon-icon_pig", displayWarning:true},
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"Cat":{taxo: "NCBITaxon:9685", iconClass:"mapicon-icon_cat", displayWarning:true},
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"Functional Connectivity": {taxo: "FunctionalConnectivity", displayWarning:true},
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MultiFlatmapVuer,
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}
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width: auto!important;
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}
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body {
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margin: 0px;
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}
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.mapboxgl-ctrl-top-left .mapboxgl-ctrl {
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margin-top:120px;
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}
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.popover{
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right:calc( 50% - 20px);
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position:absolute;
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}
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}
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}
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.options-container{
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}
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.el-tabs__content {
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height:100%;
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}
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</style>
|
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1
|
+
<template>
|
|
2
|
+
<div id="app">
|
|
3
|
+
<el-popover
|
|
4
|
+
placement="bottom"
|
|
5
|
+
trigger="click"
|
|
6
|
+
width=500
|
|
7
|
+
class="popover"
|
|
8
|
+
:appendToBody=false
|
|
9
|
+
>
|
|
10
|
+
<div class="options-container">
|
|
11
|
+
<el-row :gutter="20">
|
|
12
|
+
<el-button @click="helpMode = !helpMode" size="mini">Help Mode</el-button>
|
|
13
|
+
<el-button @click="saveSettings()" size="mini">Save Settings</el-button>
|
|
14
|
+
<el-button :disabled="mapSettings.length === 0" @click="restoreSettings()" size="mini">Restore Settings</el-button>
|
|
15
|
+
<el-autocomplete class="search-box" placeholder="Search"
|
|
16
|
+
v-model="searchText"
|
|
17
|
+
:fetch-suggestions="fetchSuggestions"
|
|
18
|
+
@keyup.enter.native="search"
|
|
19
|
+
@select="search"
|
|
20
|
+
popper-class="autocomplete-popper">
|
|
21
|
+
</el-autocomplete>
|
|
22
|
+
</el-row>
|
|
23
|
+
</div>
|
|
24
|
+
<el-button class="options-button" icon="el-icon-setting" slot="reference">Options</el-button>
|
|
25
|
+
</el-popover>
|
|
26
|
+
|
|
27
|
+
<MultiFlatmapVuer ref="multi" :availableSpecies="availableSpecies"
|
|
28
|
+
@resource-selected="FlatmapSelected" :minZoom="minZoom"
|
|
29
|
+
@pan-zoom-callback="panZoomcallback"
|
|
30
|
+
@ready="FlatmapReady" :featureInfo="featureInfo" :searchable="searchable"
|
|
31
|
+
:layerControl="layerControl"
|
|
32
|
+
:initial="initial" :pathControls="pathControls" :helpMode="helpMode"
|
|
33
|
+
:displayMinimap="true" :flatmapAPI="flatmapAPI"/>
|
|
34
|
+
</div>
|
|
35
|
+
</template>
|
|
36
|
+
|
|
37
|
+
<script>
|
|
38
|
+
/* eslint-disable no-alert, no-console */
|
|
39
|
+
import Vue from "vue";
|
|
40
|
+
import MultiFlatmapVuer from './components/MultiFlatmapVuer.vue'
|
|
41
|
+
import {
|
|
42
|
+
Autocomplete,
|
|
43
|
+
Button,
|
|
44
|
+
Col,
|
|
45
|
+
Popover,
|
|
46
|
+
Row,
|
|
47
|
+
} from 'element-ui';
|
|
48
|
+
import "./icons/mapicon-species-style.css";
|
|
49
|
+
Vue.use(Autocomplete);
|
|
50
|
+
Vue.use(Button);
|
|
51
|
+
Vue.use(Col);
|
|
52
|
+
Vue.use(Popover);
|
|
53
|
+
Vue.use(Row);
|
|
54
|
+
|
|
55
|
+
export default {
|
|
56
|
+
name: 'app',
|
|
57
|
+
methods: {
|
|
58
|
+
saveSettings: function() {
|
|
59
|
+
this.mapSettings.push(this.$refs.multi.getState());
|
|
60
|
+
},
|
|
61
|
+
restoreSettings: function() {
|
|
62
|
+
if (this.mapSettings.length > 0)
|
|
63
|
+
this.$refs.multi.setState(this.mapSettings.pop());
|
|
64
|
+
},
|
|
65
|
+
FlatmapSelected: function(resource) {
|
|
66
|
+
if (resource.eventType === "click") {
|
|
67
|
+
console.log('resource', resource);
|
|
68
|
+
}
|
|
69
|
+
},
|
|
70
|
+
FlatmapReady: function(component) {
|
|
71
|
+
console.log(component);
|
|
72
|
+
let taxon = component.mapImp.describes;
|
|
73
|
+
let id = component.mapImp.addMarker("UBERON:0000948");
|
|
74
|
+
component.enablePanZoomEvents(true);
|
|
75
|
+
//component.showPathwaysDrawer(false);
|
|
76
|
+
console.log(taxon, id);
|
|
77
|
+
//component.searchAndShowResult("heart");
|
|
78
|
+
},
|
|
79
|
+
panZoomcallback: function(payload) {
|
|
80
|
+
this.payload = payload
|
|
81
|
+
},
|
|
82
|
+
fetchSuggestions: function(term, cb) {
|
|
83
|
+
if (term === "") {
|
|
84
|
+
cb([]);
|
|
85
|
+
} else {
|
|
86
|
+
const suggestions = [];
|
|
87
|
+
const results = this.$refs.multi.getCurrentFlatmap().searchSuggestions(term);
|
|
88
|
+
results.__featureIds.forEach(id => {
|
|
89
|
+
const annotation = this.$refs.multi.getCurrentFlatmap().mapImp.annotation(id);
|
|
90
|
+
if (annotation && annotation.label)
|
|
91
|
+
suggestions.push(annotation.label);
|
|
92
|
+
});
|
|
93
|
+
const unique = new Set(suggestions);
|
|
94
|
+
suggestions.length = 0;
|
|
95
|
+
for (const item of unique) {
|
|
96
|
+
suggestions.push({"value": "\"" + item +"\""});
|
|
97
|
+
}
|
|
98
|
+
cb(suggestions);
|
|
99
|
+
}
|
|
100
|
+
},
|
|
101
|
+
search: function() {
|
|
102
|
+
console.log(this.searchText)
|
|
103
|
+
this.$refs.multi.getCurrentFlatmap().searchAndShowResult(this.searchText, true);
|
|
104
|
+
}
|
|
105
|
+
},
|
|
106
|
+
data: function(){
|
|
107
|
+
return {
|
|
108
|
+
searchText: "",
|
|
109
|
+
featureInfo: true,
|
|
110
|
+
searchable: true,
|
|
111
|
+
pathControls: true,
|
|
112
|
+
layerControl: true,
|
|
113
|
+
minZoom: 4,
|
|
114
|
+
availableSpecies : {
|
|
115
|
+
"Human Female":{taxo: "NCBITaxon:9606", biologicalSex: "PATO:0000383", iconClass:"mapicon-icon_human", displayWarning:true},
|
|
116
|
+
"Human Male":{taxo: "NCBITaxon:9606", biologicalSex: "PATO:0000384", iconClass:"mapicon-icon_human", displayWarning:true},
|
|
117
|
+
"Rat":{taxo: "NCBITaxon:10114", iconClass:"mapicon-icon_rat", displayWarning:false, displayLatestChanges:true},
|
|
118
|
+
"Mouse":{taxo: "NCBITaxon:10090", iconClass:"mapicon-icon_mouse", displayWarning:true},
|
|
119
|
+
"Kember":{taxo: "ABI:1000001", displayWarning:true},
|
|
120
|
+
"Pig":{taxo: "NCBITaxon:9823", iconClass:"mapicon-icon_pig", displayWarning:true},
|
|
121
|
+
"Cat":{taxo: "NCBITaxon:9685", iconClass:"mapicon-icon_cat", displayWarning:true},
|
|
122
|
+
"Functional Connectivity": {taxo: "FunctionalConnectivity", displayWarning:true},
|
|
123
|
+
},
|
|
124
|
+
tooltipContent: undefined,
|
|
125
|
+
tStyle: {
|
|
126
|
+
top: "200px",
|
|
127
|
+
left: "200px",
|
|
128
|
+
position: "absolute"
|
|
129
|
+
},
|
|
130
|
+
displayCloseButton: false,
|
|
131
|
+
initial: "Rat",
|
|
132
|
+
helpMode: false,
|
|
133
|
+
mapSettings: [],
|
|
134
|
+
//flatmapAPI: "https://mapcore-demo.org/current/flatmap/v2/"
|
|
135
|
+
//flatmapAPI: "https://mapcore-demo.org/devel/flatmap/v3/"
|
|
136
|
+
//flatmapAPI: "https://mapcore-demo.org/current/flatmap/v3/"
|
|
137
|
+
flatmapAPI: "https://mapcore-demo.org/devel/flatmap/v4/"
|
|
138
|
+
//flatmapAPI: "https://mapcore-demo.org/staging/flatmap/v1/"
|
|
139
|
+
// flatmapAPI: "https://mapcore-demo.org/devel/flatmap/v1/"
|
|
140
|
+
}
|
|
141
|
+
},
|
|
142
|
+
components: {
|
|
143
|
+
MultiFlatmapVuer,
|
|
144
|
+
}
|
|
145
|
+
}
|
|
146
|
+
</script>
|
|
147
|
+
|
|
148
|
+
<style lang="scss">
|
|
149
|
+
@import "~element-ui/packages/theme-chalk/src/autocomplete";
|
|
150
|
+
@import "~element-ui/packages/theme-chalk/src/button";
|
|
151
|
+
@import "~element-ui/packages/theme-chalk/src/col";
|
|
152
|
+
@import "~element-ui/packages/theme-chalk/src/popover";
|
|
153
|
+
@import "~element-ui/packages/theme-chalk/src/row";
|
|
154
|
+
|
|
155
|
+
#app {
|
|
156
|
+
font-family: 'Asap', 'Avenir', Helvetica, Arial, sans-serif;
|
|
157
|
+
-webkit-font-smoothing: antialiased;
|
|
158
|
+
-moz-osx-font-smoothing: grayscale;
|
|
159
|
+
text-align: center;
|
|
160
|
+
color: #2c3e50;
|
|
161
|
+
height:100%;
|
|
162
|
+
width: 100%;
|
|
163
|
+
position:absolute;
|
|
164
|
+
}
|
|
165
|
+
|
|
166
|
+
.mapboxgl-ctrl-top-left .mapboxgl-ctrl {
|
|
167
|
+
margin-top:120px;
|
|
168
|
+
}
|
|
169
|
+
|
|
170
|
+
.search-box {
|
|
171
|
+
margin-top: 2px;
|
|
172
|
+
height:28px;
|
|
173
|
+
::v-deep .el-input__inner {
|
|
174
|
+
background-color: $background;
|
|
175
|
+
height:28px;
|
|
176
|
+
line-height:28px;
|
|
177
|
+
border: 1px solid rgb(144, 147, 153);
|
|
178
|
+
border-radius: 4px;
|
|
179
|
+
&:focus {
|
|
180
|
+
border-color: $app-primary-color;
|
|
181
|
+
}
|
|
182
|
+
}
|
|
183
|
+
}
|
|
184
|
+
|
|
185
|
+
::v-deep .autocomplete-popper {
|
|
186
|
+
min-width:137px!important;
|
|
187
|
+
width: auto!important;
|
|
188
|
+
}
|
|
189
|
+
|
|
190
|
+
body {
|
|
191
|
+
margin: 0px;
|
|
192
|
+
}
|
|
193
|
+
|
|
194
|
+
.mapboxgl-ctrl-top-left .mapboxgl-ctrl {
|
|
195
|
+
margin-top:120px;
|
|
196
|
+
}
|
|
197
|
+
|
|
198
|
+
.popover{
|
|
199
|
+
top:5px;
|
|
200
|
+
right:calc( 50% - 20px);
|
|
201
|
+
position:absolute;
|
|
202
|
+
z-index:1000;
|
|
203
|
+
}
|
|
204
|
+
|
|
205
|
+
.el-row {
|
|
206
|
+
margin-bottom: 5px;
|
|
207
|
+
&:last-child {
|
|
208
|
+
margin-bottom: 0;
|
|
209
|
+
}
|
|
210
|
+
}
|
|
211
|
+
|
|
212
|
+
.options-container{
|
|
213
|
+
|
|
214
|
+
text-align: center;
|
|
215
|
+
}
|
|
216
|
+
|
|
217
|
+
.el-tabs__content {
|
|
218
|
+
height:100%;
|
|
219
|
+
}
|
|
220
|
+
|
|
221
|
+
</style>
|