@abi-software/flatmapvuer 0.3.9 → 0.3.10-beta

package/src/components/Tooltip.vue

@@ -1,591 +1,594 @@
-<template>
-  <div class="tooltip-container">
-     <el-main v-if="content" class="main" v-loading="loading">
-      <div class="block" v-if="content.title">
-        <span class="title">{{capitalise(content.title)}}</span>
-      </div>
-      <div class="block" v-else>
-        <span class="title">{{content.featureId}}</span>
-      </div>
-      <div class="content-container scrollbar">
-        <!-- Currently we don't show the pubmed viewer, will remove once we are certain it won't be used -->
-        <pubmed-viewer v-if="content.featureIds" v-show="false" class="block" :entry="content" @pubmedSearchUrl="pubmedSearchUrlUpdate"/>
-        {{content.paths}}
-        <div v-if="this.origins" class="block">
-          <div>
-            <span class="attribute-title">Origin</span>
-            <el-popover
-            width="250"
-            trigger="hover"
-            :append-to-body=false
-            popper-class="popover-origin-help"
-            >
-            <i slot="reference" class="el-icon-warning-outline info"/>
-            <span style="word-break: keep-all;">
-              <i>Origin</i> {{originDescription}}
-            </span>
-            </el-popover>
-          </div>
-          <div v-for="(origin, i) in origins" class="attribute-content"  :key="origin">
-            {{ capitalise(origin) }}
-            <div v-if="i != origins.length - 1" class="seperator"></div>
-          </div>
-          <el-button v-show="originsWithDatasets.length > 0" class="button" @click="openDendrites">
-            Explore origin data
-          </el-button>
-        </div>
-        <div v-if="this.components" class="block">
-          <div class="attribute-title">Components</div>
-          <div v-for="(component, i) in components" class="attribute-content"  :key="component">
-            {{ capitalise(component) }}
-            <div v-if="i != components.length - 1" class="seperator"></div>
-          </div>
-        </div>
-        <div v-if="this.destinations" class="block">
-          <div>
-            <span class="attribute-title">Destination</span>
-            <el-popover
-            width="250"
-            trigger="hover"
-            :append-to-body=false
-            popper-class="popover-origin-help"
-            >
-            <i slot="reference" class="el-icon-warning-outline info"/>
-            <span style="word-break: keep-all;">
-            <i>Destination</i> is where the axons terminate
-            </span>
-            </el-popover>
-          </div>
-          <div v-for="(destination, i) in destinations" class="attribute-content"  :key="destination">
-            {{ capitalise(destination) }}
-            <div v-if="i != destinations.length - 1" class="seperator"></div>
-          </div>
-          <el-button v-show="destinationsWithDatasets.length > 0" class="button" @click="openAxons">
-            Explore destination data
-          </el-button>
-        </div>
-
-        <!-- We will serach on components until we can search on neurons -->
-        <el-button v-show="components.length > 0" class="button" @click="openAll">
-          Search for data on components
-        </el-button>
-
-        <!-- Disable neuron search until it is ready -->
-        <!-- <el-button v-for="action in content.actions" round :key="action.title"
-          class="button" @click="resourceSelected(action)">
-          <i v-if="action.title === 'Search for datasets' || action.title === 'View Dataset' " class="el-icon-coin"></i>
-          {{action.title}}
-        </el-button> -->
-        <el-button  v-if="pubmedSearchUrl != ''" class="button" icon="el-icon-notebook-2" @click="openUrl(pubmedSearchUrl)">
-          Open publications in pubmed
-        </el-button>
-      </div>
-    </el-main>
-  </div>
-</template>
-
-
-<script>
-/* eslint-disable no-alert, no-console */
-import Vue from "vue";
-import {
-  Button,
-  Container,
-  Header,
-  Icon,
-  Main
-} from "element-ui";
-import lang from "element-ui/lib/locale/lang/en";
-import locale from "element-ui/lib/locale";
-locale.use(lang);
-Vue.use(Button);
-Vue.use(Container);
-Vue.use(Header);
-Vue.use(Icon);
-Vue.use(Main);
-
-// pubmedviewer is currently not in use, but still under review so not ready to delete yet
-import PubmedViewer from './PubmedViewer.vue'
-import EventBus from './EventBus'
-
-const titleCase = (str) => {
-  return str.replace(/\w\S*/g, (t) => { return t.charAt(0).toUpperCase() + t.substr(1).toLowerCase() });
-}
-
-const inArray = function(ar1, ar2){
-    let as1 = JSON.stringify(ar1)
-    let as2 = JSON.stringify(ar2)
-    return as1.indexOf(as2) !== -1
-}
-
-// remove duplicates by stringifying the objects
-const removeDuplicates = function(arrayOfAnything){
-  return [...new Set(arrayOfAnything.map(e => JSON.stringify(e)))].map(e => JSON.parse(e)) 
-}
-
-const capitalise = function(str){
-  if (str)
-    return str.charAt(0).toUpperCase() + str.slice(1)
-  return ""
-}
-
-export default {
-  components: { PubmedViewer },
-  name: "Tooltip",
-  props: { 
-    visible: {
-      type: Boolean,
-      default: false
-    },
-    content: {
-      type: Object,
-      default: undefined
-    },
-  },
-  data: function() {
-    return {
-      activeSpecies: undefined,
-      appendToBody: false,
-      pubmedSearchUrl: '',
-      loading: false,
-      destinations: [],
-      origins: [],
-      components: [],
-      destinationsWithDatasets: [],
-      originsWithDatasets: [],
-      originDescriptions: {
-        'motor': 'is the location of the initial cell body of the circuit',
-        'sensory': 'is the location of the initial cell body in the PNS circuit'
-      },
-      componentsWithDatasets: [],
-      uberons: [{id: undefined, name: undefined}]
-    };
-  },
-  inject: ['sparcAPI', 'flatmapAPI'],
-  watch: {
-    'content.featureIds': {
-      handler: function(){
-        this.pathwayQuery(this.content.featureIds)
-      }
-    }
-  },
-  mounted: function(){
-    this.getOrganCuries()
-  },
-  computed: {
-    originDescription: function(){
-      if(this.content && this.content.title && this.content.title.toLowerCase().includes('motor')){
-        return this.originDescriptions.motor
-      } else {
-        return this.originDescriptions.sensory
-      }
-    }
-  },
-  methods: {
-    resourceSelected: function(action) {
-      this.$emit("resource-selected", action); 
-    },
-    titleCase: function(title){
-      return titleCase(title)
-    },
-    capitalise: function(text){
-      return capitalise(text)
-    },
-    onClose: function() {
-      this.$emit("onClose")
-    },
-    openUrl: function(url){
-      window.open(url, '_blank')
-    },
-    openAll: function(){
-      EventBus.$emit('onActionClick', {type:'Facets', labels: this.components})
-    },
-    openAxons: function(){
-      EventBus.$emit('onActionClick', {type:'Facets', labels: this.destinationsWithDatasets.map(a=>a.name)})
-    },
-    openDendrites: function(){
-      EventBus.$emit('onActionClick', {type:'Facets', labels: this.originsWithDatasets.map(a=>a.name)})
-    },
-    pubmedSearchUrlUpdate: function (val){
-      this.pubmedSearchUrl = val
-    },
-    findAllIdsFromConnectivity(connectivity){
-      let dnodes = connectivity.connectivity.flat() // get nodes from edgelist
-      let nodes = [...new Set(dnodes)] // remove duplicates
-      let found = []
-      nodes.forEach(n=>{
-        if (Array.isArray(n)){
-          found.push(n.flat())
-        } else {
-          found.push(n)
-        }
-      })
-      return [... new Set(found.flat())]
-    },
-    flattenConntectivity(connectivity){
-      let dnodes = connectivity.flat() // get nodes from edgelist
-      let nodes = [...new Set(dnodes)] // remove duplicates
-      let found = []
-      nodes.forEach(n=>{
-        if (Array.isArray(n)){
-          found.push(n.flat())
-        } else {
-          found.push(n)
-        }
-      })
-      return found.flat()
-    },
-    findComponents: function(connectivity){
-      let dnodes = connectivity.connectivity.flat() // get nodes from edgelist
-      let nodes = removeDuplicates(dnodes)
-
-      let found = []
-      let terminal = false
-      nodes.forEach(node=>{
-        terminal = false
-        // Check if the node is an destination or origin (note that they are labelled dendrite and axon as opposed to origin and destination)
-        if(inArray(connectivity.axons,node)){
-          terminal = true
-        }
-        if(inArray(connectivity.dendrites, node)){
-          terminal = true
-        }
-        if (!terminal){
-          found.push(node)
-        }
-      })
-
-      return found
-    },
-    getOrganCuries: function(){
-      fetch(`${this.sparcAPI}get-organ-curies/`)
-        .then(response=>response.json())
-        .then(data=>{
-          this.uberons = data.uberon.array
-        })
-    },
-    buildConnectivitySqlStatement: function(keastIds) {
-      let sql = 'select knowledge from knowledge where entity in ('
-      if (keastIds.length === 1) {
-        sql += `'${keastIds[0]}')`
-      } else if (keastIds.length > 1) {
-        for (let i in keastIds) {
-          sql += `'${keastIds[i]}'${i >= keastIds.length - 1 ? ')' : ','} `
-        }
-      }
-      return sql
-    },
-    buildLabelSqlStatement: function(uberons) {
-      let sql = 'select entity, label from labels where entity in ('
-      if (uberons.length === 1) {
-        sql += `'${uberons[0]}')`
-      } else if (uberons.length > 1) {
-        for (let i in uberons) {
-          sql += `'${uberons[i]}'${i >= uberons.length - 1 ? ')' : ','} `
-        }
-      }
-      return sql
-    },
-    createLabelLookup: function(uberons) {
-      return new Promise(resolve=> {
-        let uberonMap = {}
-        const data = { sql: this.buildLabelSqlStatement(uberons)}
-        fetch(`${this.flatmapAPI}knowledge/query/`, {
-            method: 'POST',
-            headers: {
-              'Content-Type': 'application/json',
-            },
-            body: JSON.stringify(data),
-          })
-          .then(response => response.json())
-          .then(payload => {
-            const entity = payload.keys.indexOf("entity");
-            const label = payload.keys.indexOf("label");
-            if (entity > -1 && label > -1) {
-              payload.values.forEach(pair => {
-                uberonMap[pair[entity]] = pair[label];
-              });
-            }
-            resolve(uberonMap)
-          })
-      })
-    },
-    createComponentsLabelList: function(components, lookUp){
-      let labelList = []
-      components.forEach(n=>{
-        labelList.push(this.createLabelFromNeuralNode(n[0]), lookUp)
-        if (n.length === 2){
-          labelList.push(this.createLabelFromNeuralNode(n[1]), lookUp)
-        }
-      })
-      return labelList
-    },
-    createLabelFromNeuralNode: function(node, lookUp){
-      let label = lookUp[node[0]]
-      if (node.length === 2 && node[1].length > 0){
-        node[1].forEach(n=>{
-          if (lookUp[n] == undefined){
-            label += `, ${n}` 
-          } else {
-            label += `, ${lookUp[n]}`
-          }
-        })
-      }
-      return label
-    },
-    pathwayQuery: function(keastIds){
-      this.destinations = []
-      this.origins = []
-      this.components = []
-      this.loading = true
-      if (!keastIds || keastIds.length == 0) return
-      const data = { sql: this.buildConnectivitySqlStatement(keastIds)};
-      fetch(`${this.flatmapAPI}knowledge/query/`, {
-        method: 'POST',
-        headers: {
-          'Content-Type': 'application/json',
-        },
-        body: JSON.stringify(data),
-      })
-      .then(response => response.json())
-      .then(data => {
-        let connectivity = JSON.parse(data.values[0][0])
-        // Filter the origin and destinations from components
-        let components = this.findComponents(connectivity)
-
-        // process the nodes for finding datasets
-        let componentsFlat = this.flattenConntectivity(components)
-        let axons = removeDuplicates(connectivity.axons)
-        let dendrites = removeDuplicates(connectivity.dendrites)
-        let axonsFlat = this.flattenConntectivity(axons)
-        let dendritesFlat = this.flattenConntectivity(dendrites)
-
-        let conIds = this.findAllIdsFromConnectivity(connectivity)  // Create list of ids to get labels for
-
-        // Create readable labels from the nodes. Setting this to 'this.origins' updates the display
-        this.createLabelLookup(conIds).then(lookUp=>{
-          this.destinations = axons.map(a=>this.createLabelFromNeuralNode(a,lookUp))
-          this.origins = dendrites.map(d=>this.createLabelFromNeuralNode(d,lookUp))
-          this.components = components.map(c=>this.createLabelFromNeuralNode(c, lookUp))
-        })
-
-        // Filter for the anatomy which is annotated on datasets
-        this.destinationsWithDatasets = this.uberons.filter(ub => axonsFlat.indexOf(ub.id) !== -1)
-        this.originsWithDatasets = this.uberons.filter(ub => dendritesFlat.indexOf(ub.id) !== -1)
-        this.componentsWithDatasets = this.uberons.filter(ub => componentsFlat.indexOf(ub.id) !== -1)
-        this.loading = false
-      })
-      .catch((error) => {
-        console.error('Error:', error);
-      })
-    }
-  }
-};
-</script>
-
-<style scoped lang="scss">
-@import "~element-ui/packages/theme-chalk/src/button";
-@import "~element-ui/packages/theme-chalk/src/container";
-@import "~element-ui/packages/theme-chalk/src/header";
-@import "~element-ui/packages/theme-chalk/src/main";
-
-.tooltip-container {
-  text-align:justify;
-  border-radius: 4px;
-  box-shadow: 0 1px 2px rgba(0,0,0,.1);
-  pointer-events: auto;
-  background: #fff;
-  border: 1px solid $app-primary-color;
-  display: flex;
-  justify-content: center;
-  align-items: center;
-}
-
-.display {
-  width: 44px;
-  word-break: normal;
-}
-
-.title {
-  text-align: left;
-  width: 16em;
-  line-height: 1.5em !important;
-  font-size: 1em;
-  font-family: Helvetica;
-  font-weight: 500;
-  /* font-weight: bold; */
-  padding-bottom: 8px;
-}
-
-.block {
-  margin-bottom: 1.5em;
-}
-
-.pub {
-  width: 16rem;
-}
-
-.icon {
-  right: 0px;
-  position: absolute;
-  top: 10px;
-}
-
-.icon:hover {
-  cursor: pointer;
-}
-
-.popover-origin-help {
-  text-transform: none !important; // need to overide the tooltip text transform
-}
-
-.info{
-  transform: rotate(180deg);
-  color: #8300bf;
-  margin-left: 8px;
-}
-
-.seperator {
-  width:90%;
-  height:0.5px;
-  background-color:#bfbec2;
-}
-
-.main {
-  font-size: 14px;
-  text-align: left;
-  line-height: 1.5em;
-  font-family: Helvetica;
-  font-weight: 400;
-  /* outline: thin red solid; */
-  padding: 1em !important;
-  overflow: hidden;
-  min-width: 16rem;
-}
-
-.title{
-  font-size: 18px;
-  font-weight: 500;
-  font-weight: bold;
-  padding-bottom: 8px;
-  color: rgb(131, 0, 191);
-
-}
-
-.attribute-title{
-  font-size: 16px;
-  font-weight: 600;
-  /* font-weight: bold; */
-  text-transform: uppercase;
-}
-
-.attribute-content{
-  font-size: 14px;
-  font-weight: 500;
-}
-
-.popover-container {
-  height: 100%;
-  width: 100%;
-}
-
-.main {
-  .el-button.is-round{
-    border-radius: 4px;
-    padding: 9px 20px 10px 20px;
-    display: flex;
-    height: 36px;
-  }
-}
-
-.button {
-  margin-left: 0px !important;
-  margin-top: 0px !important;
-  font-size: 14px !important;
-  background-color: $app-primary-color;
-  color: #fff;
-  &+.button {
-    margin-top: 10px !important;
-  }
-  &:hover {
-    color: #fff !important;
-    background: #ac76c5 !important;
-    border: 1px solid #ac76c5 !important;
-  }
-}
-
-.tooltip-container{
-  &::after, &::before {
-    content: '';
-    display: block;
-    position: absolute;
-    width: 0;
-    height: 0;
-    border-style: solid;
-    flex-shrink: 0;
-  }
-}
-
-.mapboxgl-popup-anchor-bottom {
-  .tooltip-container {
-    &::after, &::before {
-      top: 100%;
-      border-width: 12px;
-    }
-    &::after {
-      margin-top:-1px;
-      border-color: rgb(255, 255, 255) transparent transparent  transparent ;
-    }
-    &::before {
-      margin: 0 auto;
-      border-color: $app-primary-color  transparent  transparent transparent ;
-    }
-  }
-}
-
-.mapboxgl-popup-anchor-top {
-  .tooltip-container {
-    &::after, &::before {
-      top: -24px;
-      border-width: 12px;
-    }
-    &::after {
-      margin-top: 1px;
-      border-color: transparent transparent rgb(255, 255, 255) transparent ;
-    }
-    &::before {
-      margin: 0 auto;
-      border-color: transparent transparent $app-primary-color transparent ;
-    }
-  }
-}
-
-.content-container {
-  overflow-y: scroll;
-  scrollbar-width: thin !important;
-  height: 200px;
-}
-
-.scrollbar::-webkit-scrollbar-track {
-  border-radius: 10px;
-  background-color: #f5f5f5;
-}
-
-.scrollbar::-webkit-scrollbar {
-  width: 12px;
-  right: -12px;
-  background-color: #f5f5f5;
-}
-
-.scrollbar::-webkit-scrollbar-thumb {
-  border-radius: 4px;
-  box-shadow: 0 2px 4px 0 rgba(0, 0, 0, 0.06);
-  background-color: #979797;
-}
-
-
-/* Fix for chrome bug where under triangle pops up above one on top of it  */
-.selector:not(*:root), .tooltip-container::after{
-  top: 99.4%;
-}
-</style>
+<template>
+  <div class="tooltip-container">
+     <el-main v-if="content" class="main" v-loading="loading">
+      <div class="block" v-if="content.title">
+        <span class="title">{{capitalise(content.title)}}</span>
+      </div>
+      <div class="block" v-else>
+        <span class="title">{{content.featureId}}</span>
+      </div>
+      <div class="content-container scrollbar">
+        {{content.paths}}
+        <div v-if="this.origins" class="block">
+          <div>
+            <span class="attribute-title">Origin</span>
+            <el-popover
+            width="250"
+            trigger="hover"
+            :append-to-body=false
+            popper-class="popover-origin-help"
+            >
+            <i slot="reference" class="el-icon-warning-outline info"/>
+            <span style="word-break: keep-all;">
+              <i>Origin</i> {{originDescription}}
+            </span>
+            </el-popover>
+          </div>
+          <div v-for="(origin, i) in origins" class="attribute-content"  :key="origin">
+            {{ capitalise(origin) }}
+            <div v-if="i != origins.length - 1" class="seperator"></div>
+          </div>
+          <el-button v-show="originsWithDatasets.length > 0" class="button" @click="openDendrites">
+            Explore origin data
+          </el-button>
+        </div>
+        <div v-if="this.components" class="block">
+          <div class="attribute-title">Components</div>
+          <div v-for="(component, i) in components" class="attribute-content"  :key="component">
+            {{ capitalise(component) }}
+            <div v-if="i != components.length - 1" class="seperator"></div>
+          </div>
+        </div>
+        <div v-if="this.destinations" class="block">
+          <div>
+            <span class="attribute-title">Destination</span>
+            <el-popover
+            width="250"
+            trigger="hover"
+            :append-to-body=false
+            popper-class="popover-origin-help"
+            >
+            <i slot="reference" class="el-icon-warning-outline info"/>
+            <span style="word-break: keep-all;">
+            <i>Destination</i> is where the axons terminate
+            </span>
+            </el-popover>
+          </div>
+          <div v-for="(destination, i) in destinations" class="attribute-content"  :key="destination">
+            {{ capitalise(destination) }}
+            <div v-if="i != destinations.length - 1" class="seperator"></div>
+          </div>
+          <el-button v-show="destinationsWithDatasets.length > 0" class="button" @click="openAxons">
+            Explore destination data
+          </el-button>
+        </div>
+
+        <el-button v-show="components.length > 0" class="button" @click="openAll">
+          Search for data on components
+        </el-button>
+
+        <!-- pubmed-viewer is just used for processing pubmed requests (no display) -->
+        <pubmed-viewer v-if="content.featureIds" v-show="false" :entry="content" @pubmedSearchUrl="pubmedSearchUrlUpdate"/>
+        <el-button  v-if="pubmedSearchUrl != ''" class="button" icon="el-icon-notebook-2" @click="openUrl(pubmedSearchUrl)">
+          Open publications in pubmed
+        </el-button>
+      </div>
+    </el-main>
+  </div>
+</template>
+
+
+<script>
+/* eslint-disable no-alert, no-console */
+import Vue from "vue";
+import {
+  Button,
+  Container,
+  Header,
+  Icon,
+  Main
+} from "element-ui";
+import lang from "element-ui/lib/locale/lang/en";
+import locale from "element-ui/lib/locale";
+locale.use(lang);
+Vue.use(Button);
+Vue.use(Container);
+Vue.use(Header);
+Vue.use(Icon);
+Vue.use(Main);
+
+// pubmedviewer is currently not in use, but still under review so not ready to delete yet
+import PubmedViewer from './PubmedViewer.vue'
+import EventBus from './EventBus'
+
+const titleCase = (str) => {
+  return str.replace(/\w\S*/g, (t) => { return t.charAt(0).toUpperCase() + t.substr(1).toLowerCase() });
+}
+
+const inArray = function(ar1, ar2){
+    let as1 = JSON.stringify(ar1)
+    let as2 = JSON.stringify(ar2)
+    return as1.indexOf(as2) !== -1
+}
+
+// remove duplicates by stringifying the objects
+const removeDuplicates = function(arrayOfAnything){
+  return [...new Set(arrayOfAnything.map(e => JSON.stringify(e)))].map(e => JSON.parse(e)) 
+}
+
+const capitalise = function(str){
+  if (str)
+    return str.charAt(0).toUpperCase() + str.slice(1)
+  return ""
+}
+
+export default {
+  components: { PubmedViewer },
+  name: "Tooltip",
+  props: { 
+    visible: {
+      type: Boolean,
+      default: false
+    },
+    content: {
+      type: Object,
+      default: undefined
+    },
+  },
+  data: function() {
+    return {
+      activeSpecies: undefined,
+      appendToBody: false,
+      pubmedSearchUrl: '',
+      loading: false,
+      destinations: [],
+      origins: [],
+      components: [],
+      destinationsWithDatasets: [],
+      originsWithDatasets: [],
+      originDescriptions: {
+        'motor': 'is the location of the initial cell body of the circuit',
+        'sensory': 'is the location of the initial cell body in the PNS circuit'
+      },
+      componentsWithDatasets: [],
+      uberons: [{id: undefined, name: undefined}]
+    };
+  },
+  inject: ['sparcAPI', 'flatmapAPI'],
+  watch: {
+    'content.featureIds': {
+      handler: function(){
+        this.pathwayQuery(this.content.featureIds)
+      }
+    }
+  },
+  mounted: function(){
+    this.getOrganCuries()
+  },
+  computed: {
+    originDescription: function(){
+      if(this.content && this.content.title && this.content.title.toLowerCase().includes('motor')){
+        return this.originDescriptions.motor
+      } else {
+        return this.originDescriptions.sensory
+      }
+    }
+  },
+  methods: {
+    resourceSelected: function(action) {
+      this.$emit("resource-selected", action); 
+    },
+    titleCase: function(title){
+      return titleCase(title)
+    },
+    capitalise: function(text){
+      return capitalise(text)
+    },
+    onClose: function() {
+      this.$emit("onClose")
+    },
+    openUrl: function(url){
+      window.open(url, '_blank')
+    },
+    openAll: function(){
+      EventBus.$emit('onActionClick', {type:'Facets', labels: this.components})
+    },
+    openAxons: function(){
+      EventBus.$emit('onActionClick', {type:'Facets', labels: this.destinationsWithDatasets.map(a=>a.name)})
+    },
+    openDendrites: function(){
+      EventBus.$emit('onActionClick', {type:'Facets', labels: this.originsWithDatasets.map(a=>a.name)})
+    },
+    pubmedSearchUrlUpdate: function (val){
+      this.pubmedSearchUrl = val
+    },
+    findAllIdsFromConnectivity(connectivity){
+      let dnodes = connectivity.connectivity.flat() // get nodes from edgelist
+      let nodes = [...new Set(dnodes)] // remove duplicates
+      let found = []
+      nodes.forEach(n=>{
+        if (Array.isArray(n)){
+          found.push(n.flat())
+        } else {
+          found.push(n)
+        }
+      })
+      return [... new Set(found.flat())]
+    },
+    flattenConntectivity(connectivity){
+      let dnodes = connectivity.flat() // get nodes from edgelist
+      let nodes = [...new Set(dnodes)] // remove duplicates
+      let found = []
+      nodes.forEach(n=>{
+        if (Array.isArray(n)){
+          found.push(n.flat())
+        } else {
+          found.push(n)
+        }
+      })
+      return found.flat()
+    },
+    findComponents: function(connectivity){
+      let dnodes = connectivity.connectivity.flat() // get nodes from edgelist
+      let nodes = removeDuplicates(dnodes)
+
+      let found = []
+      let terminal = false
+      nodes.forEach(node=>{
+        terminal = false
+        // Check if the node is an destination or origin (note that they are labelled dendrite and axon as opposed to origin and destination)
+        if(inArray(connectivity.axons,node)){
+          terminal = true
+        }
+        if(inArray(connectivity.dendrites, node)){
+          terminal = true
+        }
+        if (!terminal){
+          found.push(node)
+        }
+      })
+
+      return found
+    },
+    getOrganCuries: function(){
+      fetch(`${this.sparcAPI}get-organ-curies/`)
+        .then(response=>response.json())
+        .then(data=>{
+          this.uberons = data.uberon.array
+        })
+    },
+    buildConnectivitySqlStatement: function(keastIds) {
+      let sql = 'select knowledge from knowledge where entity in ('
+      if (keastIds.length === 1) {
+        sql += `'${keastIds[0]}')`
+      } else if (keastIds.length > 1) {
+        for (let i in keastIds) {
+          sql += `'${keastIds[i]}'${i >= keastIds.length - 1 ? ')' : ','} `
+        }
+      }
+      return sql
+    },
+    buildLabelSqlStatement: function(uberons) {
+      let sql = 'select entity, label from labels where entity in ('
+      if (uberons.length === 1) {
+        sql += `'${uberons[0]}')`
+      } else if (uberons.length > 1) {
+        for (let i in uberons) {
+          sql += `'${uberons[i]}'${i >= uberons.length - 1 ? ')' : ','} `
+        }
+      }
+      return sql
+    },
+    createLabelLookup: function(uberons) {
+      return new Promise(resolve=> {
+        let uberonMap = {}
+        const data = { sql: this.buildLabelSqlStatement(uberons)}
+        fetch(`${this.flatmapAPI}knowledge/query/`, {
+            method: 'POST',
+            headers: {
+              'Content-Type': 'application/json',
+            },
+            body: JSON.stringify(data),
+          })
+          .then(response => response.json())
+          .then(payload => {
+            const entity = payload.keys.indexOf("entity");
+            const label = payload.keys.indexOf("label");
+            if (entity > -1 && label > -1) {
+              payload.values.forEach(pair => {
+                uberonMap[pair[entity]] = pair[label];
+              });
+            }
+            resolve(uberonMap)
+          })
+      })
+    },
+    createComponentsLabelList: function(components, lookUp){
+      let labelList = []
+      components.forEach(n=>{
+        labelList.push(this.createLabelFromNeuralNode(n[0]), lookUp)
+        if (n.length === 2){
+          labelList.push(this.createLabelFromNeuralNode(n[1]), lookUp)
+        }
+      })
+      return labelList
+    },
+    createLabelFromNeuralNode: function(node, lookUp){
+      let label = lookUp[node[0]]
+      if (node.length === 2 && node[1].length > 0){
+        node[1].forEach(n=>{
+          if (lookUp[n] == undefined){
+            label += `, ${n}` 
+          } else {
+            label += `, ${lookUp[n]}`
+          }
+        })
+      }
+      return label
+    },
+    processConnectivity(connectivity){
+      // Filter the origin and destinations from components
+      let components = this.findComponents(connectivity)
+
+      // Remove duplicates
+      let axons = removeDuplicates(connectivity.axons)
+      let dendrites = removeDuplicates(connectivity.dendrites)
+
+      // Create list of ids to get labels for
+      let conIds = this.findAllIdsFromConnectivity(connectivity)  
+
+      // Create readable labels from the nodes. Setting this to 'this.origins' updates the display
+      this.createLabelLookup(conIds).then(lookUp=>{
+        this.destinations = axons.map(a=>this.createLabelFromNeuralNode(a,lookUp))
+        this.origins = dendrites.map(d=>this.createLabelFromNeuralNode(d,lookUp))
+        this.components = components.map(c=>this.createLabelFromNeuralNode(c, lookUp))
+      })
+
+      this.flattenAndFindDatasets(components, axons, dendrites)
+    },
+    flattenAndFindDatasets(components, axons, dendrites){
+      
+      // process the nodes for finding datasets (Note this is not critical to the tooltip, only for the 'search on components' button)
+      let componentsFlat = this.flattenConntectivity(components)
+      let axonsFlat = this.flattenConntectivity(axons)
+      let dendritesFlat = this.flattenConntectivity(dendrites)
+
+      // Filter for the anatomy which is annotated on datasets
+      this.destinationsWithDatasets = this.uberons.filter(ub => axonsFlat.indexOf(ub.id) !== -1)
+      this.originsWithDatasets = this.uberons.filter(ub => dendritesFlat.indexOf(ub.id) !== -1)
+      this.componentsWithDatasets = this.uberons.filter(ub => componentsFlat.indexOf(ub.id) !== -1)
+    },
+    pathwayQuery: function(keastIds){
+      this.destinations = []
+      this.origins = []
+      this.components = []
+      this.loading = true
+      if (!keastIds || keastIds.length == 0) return
+      const data = { sql: this.buildConnectivitySqlStatement(keastIds)};
+      fetch(`${this.flatmapAPI}knowledge/query/`, {
+        method: 'POST',
+        headers: {
+          'Content-Type': 'application/json',
+        },
+        body: JSON.stringify(data),
+      })
+      .then(response => response.json())
+      .then(data => {
+        let connectivity = JSON.parse(data.values[0][0])
+        this.processConnectivity(connectivity)
+        this.loading = false
+      })
+      .catch((error) => {
+        console.error('Error:', error);
+      })
+    }
+  }
+};
+</script>
+
+<style scoped lang="scss">
+@import "~element-ui/packages/theme-chalk/src/button";
+@import "~element-ui/packages/theme-chalk/src/container";
+@import "~element-ui/packages/theme-chalk/src/header";
+@import "~element-ui/packages/theme-chalk/src/main";
+
+.tooltip-container {
+  text-align:justify;
+  border-radius: 4px;
+  box-shadow: 0 1px 2px rgba(0,0,0,.1);
+  pointer-events: auto;
+  background: #fff;
+  border: 1px solid $app-primary-color;
+  display: flex;
+  justify-content: center;
+  align-items: center;
+}
+
+.display {
+  width: 44px;
+  word-break: normal;
+}
+
+.title {
+  text-align: left;
+  width: 16em;
+  line-height: 1.5em !important;
+  font-size: 1em;
+  font-family: Helvetica;
+  font-weight: 500;
+  /* font-weight: bold; */
+  padding-bottom: 8px;
+}
+
+.block {
+  margin-bottom: 1.5em;
+}
+
+.pub {
+  width: 16rem;
+}
+
+.icon {
+  right: 0px;
+  position: absolute;
+  top: 10px;
+}
+
+.icon:hover {
+  cursor: pointer;
+}
+
+.popover-origin-help {
+  text-transform: none !important; // need to overide the tooltip text transform
+}
+
+.info{
+  transform: rotate(180deg);
+  color: #8300bf;
+  margin-left: 8px;
+}
+
+.seperator {
+  width:90%;
+  height:0.5px;
+  background-color:#bfbec2;
+}
+
+.main {
+  font-size: 14px;
+  text-align: left;
+  line-height: 1.5em;
+  font-family: Helvetica;
+  font-weight: 400;
+  /* outline: thin red solid; */
+  padding: 1em !important;
+  overflow: hidden;
+  min-width: 16rem;
+}
+
+.title{
+  font-size: 18px;
+  font-weight: 500;
+  font-weight: bold;
+  padding-bottom: 8px;
+  color: rgb(131, 0, 191);
+
+}
+
+.attribute-title{
+  font-size: 16px;
+  font-weight: 600;
+  /* font-weight: bold; */
+  text-transform: uppercase;
+}
+
+.attribute-content{
+  font-size: 14px;
+  font-weight: 500;
+}
+
+.popover-container {
+  height: 100%;
+  width: 100%;
+}
+
+.main {
+  .el-button.is-round{
+    border-radius: 4px;
+    padding: 9px 20px 10px 20px;
+    display: flex;
+    height: 36px;
+  }
+}
+
+.button {
+  margin-left: 0px !important;
+  margin-top: 0px !important;
+  font-size: 14px !important;
+  background-color: $app-primary-color;
+  color: #fff;
+  &+.button {
+    margin-top: 10px !important;
+  }
+  &:hover {
+    color: #fff !important;
+    background: #ac76c5 !important;
+    border: 1px solid #ac76c5 !important;
+  }
+}
+
+.tooltip-container{
+  &::after, &::before {
+    content: '';
+    display: block;
+    position: absolute;
+    width: 0;
+    height: 0;
+    border-style: solid;
+    flex-shrink: 0;
+  }
+}
+
+.mapboxgl-popup-anchor-bottom {
+  .tooltip-container {
+    &::after, &::before {
+      top: 100%;
+      border-width: 12px;
+    }
+    &::after {
+      margin-top:-1px;
+      border-color: rgb(255, 255, 255) transparent transparent  transparent ;
+    }
+    &::before {
+      margin: 0 auto;
+      border-color: $app-primary-color  transparent  transparent transparent ;
+    }
+  }
+}
+
+.mapboxgl-popup-anchor-top {
+  .tooltip-container {
+    &::after, &::before {
+      top: -24px;
+      border-width: 12px;
+    }
+    &::after {
+      margin-top: 1px;
+      border-color: transparent transparent rgb(255, 255, 255) transparent ;
+    }
+    &::before {
+      margin: 0 auto;
+      border-color: transparent transparent $app-primary-color transparent ;
+    }
+  }
+}
+
+.content-container {
+  overflow-y: scroll;
+  scrollbar-width: thin !important;
+  height: 200px;
+}
+
+.scrollbar::-webkit-scrollbar-track {
+  border-radius: 10px;
+  background-color: #f5f5f5;
+}
+
+.scrollbar::-webkit-scrollbar {
+  width: 12px;
+  right: -12px;
+  background-color: #f5f5f5;
+}
+
+.scrollbar::-webkit-scrollbar-thumb {
+  border-radius: 4px;
+  box-shadow: 0 2px 4px 0 rgba(0, 0, 0, 0.06);
+  background-color: #979797;
+}
+
+
+/* Fix for chrome bug where under triangle pops up above one on top of it  */
+.selector:not(*:root), .tooltip-container::after{
+  top: 99.4%;
+}
+</style>