@abi-software/flatmapvuer 0.3.14 → 0.4.0-beta-0

package/src/components/PubmedViewer.vue

@@ -1,150 +1,150 @@
-<template>
-  <div class="pubmed-container">
-    <!-- To view old pubmed display go to: https://github.com/Tehsurfer/flatmapvuer/commit/eca131f8d32cdcac4d136d1722d7fe4df25f6c3a -->
-  </div>
-</template>
-
-
-<script>
-/* eslint-disable no-alert, no-console */
-
-export default {
-  name: "Tooltip",
-  props: {
-    entry: {
-      type: Object,
-      default: () => {}
-    },
-  },
-  watch: {
-    'entry.featureIds': {
-      handler: function(ids) {
-        this.pubmedQueryOnIds(ids)
-      }
-    }
-  },
-  inject: ['flatmapAPI'],
-  data: function() {
-    return {
-      pubmeds: [],
-      pubmedIds: [],
-    };
-  },
-  mounted: function() {
-    if (this.entry.featureIds)
-      this.pubmedQueryOnIds(this.entry.featureIds)
-  },
-  methods: {
-    stripPMIDPrefix: function (pubmedId){
-      return pubmedId.split(':')[1]
-    },
-    buildPubmedSqlStatement: function(keastIds) {
-      let sql = 'select distinct publication from publications where entity in ('
-      if (keastIds.length === 1) {
-        sql += `'${keastIds[0]}')`
-      } else if (keastIds.length > 1) {
-        for (let i in keastIds) {
-          sql += `'${keastIds[i]}'${i >= keastIds.length - 1 ? ')' : ','} `
-        }
-      }
-      return sql
-    },
-    buildPubmedSqlStatementForModels: function(model) {
-      return `select distinct publication from publications where entity = '${model}'`
-    },
-    flatmapQuery: function(sql){
-      const data = { sql: sql}
-      return fetch(`${this.flatmapAPI}knowledge/query/`, {
-        method: 'POST',
-        headers: {
-          'Content-Type': 'application/json',
-        },
-        body: JSON.stringify(data),
-      })
-      .then(response => response.json())
-      .catch((error) => {
-        console.error('Error:', error)
-      })
-    },
-    pubmedQueryOnIds: function(keastIds){
-      if(!keastIds || keastIds.length === 0) return
-      const sql = this.buildPubmedSqlStatement(keastIds)
-      this.flatmapQuery(sql).then(data=>{
-        this.responseData = data
-        // Create pubmed url on paths if we have them
-        if (data.values.length > 0){
-          this.$emit('pubmedSearchUrl', this.pubmedSearchUrl(data.values.map(id=>this.stripPMIDPrefix(id[0]))))
-        } else { // Create pubmed url on models
-          this.pubmedQueryOnModels(this.entry.source)
-        }
-      })
-    },
-    pubmedQueryOnModels(source){
-      this.flatmapQuery(this.buildPubmedSqlStatementForModels(source)).then(data=>{
-        if (Array.isArray(data.values) && data.values.length > 0){
-          this.$emit('pubmedSearchUrl', this.pubmedSearchUrl(data.values.map(id=>this.stripPMIDPrefix(id[0]))))
-        } else {
-          this.$emit('pubmedSearchUrl', '') // Clears the pubmed search button 
-        } 
-      })
-    },
-    pubmedSearchUrl: function(ids) {
-      let url = 'https://pubmed.ncbi.nlm.nih.gov/?'
-      let params = new URLSearchParams()
-      params.append('term', ids)
-      return url + params.toString()
-    }
-  }
-};
-</script>
-
-<style scoped lang="scss">
-@import "~element-ui/packages/theme-chalk/src/link";
-@import "~element-ui/packages/theme-chalk/src/carousel";
-@import "~element-ui/packages/theme-chalk/src/carousel-item";
-
-.attribute-title{
-  font-size: 16px;
-  font-weight: 600;
-  /* font-weight: bold; */
-  text-transform: uppercase;
-}
-
-.attribute-content{
-  font-size: 14px;
-  font-weight: 400;
-}
-
-.el-link {
-  color: $app-primary-color;
-  text-decoration: none;
-  word-wrap: break-word;
-  &:hover, &:focus{
-    color: $app-primary-color;
-    text-decoration: underline;
-  }
-}
-
-::v-deep .el-carousel__button {
-  background-color: $app-primary-color;  
-}
-
-.button {
-  margin-left: 0px !important;
-  margin-top: 0px !important;
-  font-size: 14px !important;
-  background-color: $app-primary-color;
-  color: #fff;
-  &:hover{
-    color: #fff !important;
-    background: #ac76c5 !important;
-    border: 1px solid #ac76c5 !important;
-  }
-  &+.button {
-    margin-top: 10px !important;
-    background-color: $app-primary-color;
-    color: #fff; 
-  }
-}
-
+<template>
+  <div class="pubmed-container">
+    <!-- To view old pubmed display go to: https://github.com/Tehsurfer/flatmapvuer/commit/eca131f8d32cdcac4d136d1722d7fe4df25f6c3a -->
+  </div>
+</template>
+
+
+<script>
+/* eslint-disable no-alert, no-console */
+
+export default {
+  name: "Tooltip",
+  props: {
+    entry: {
+      type: Object,
+      default: () => {}
+    },
+  },
+  watch: {
+    'entry.featureIds': {
+      handler: function(ids) {
+        this.pubmedQueryOnIds(ids)
+      }
+    }
+  },
+  inject: ['flatmapAPI'],
+  data: function() {
+    return {
+      pubmeds: [],
+      pubmedIds: [],
+    };
+  },
+  mounted: function() {
+    if (this.entry.featureIds)
+      this.pubmedQueryOnIds(this.entry.featureIds)
+  },
+  methods: {
+    stripPMIDPrefix: function (pubmedId){
+      return pubmedId.split(':')[1]
+    },
+    buildPubmedSqlStatement: function(keastIds) {
+      let sql = 'select distinct publication from publications where entity in ('
+      if (keastIds.length === 1) {
+        sql += `'${keastIds[0]}')`
+      } else if (keastIds.length > 1) {
+        for (let i in keastIds) {
+          sql += `'${keastIds[i]}'${i >= keastIds.length - 1 ? ')' : ','} `
+        }
+      }
+      return sql
+    },
+    buildPubmedSqlStatementForModels: function(model) {
+      return `select distinct publication from publications where entity = '${model}'`
+    },
+    flatmapQuery: function(sql){
+      const data = { sql: sql}
+      return fetch(`${this.flatmapAPI}knowledge/query/`, {
+        method: 'POST',
+        headers: {
+          'Content-Type': 'application/json',
+        },
+        body: JSON.stringify(data),
+      })
+      .then(response => response.json())
+      .catch((error) => {
+        console.error('Error:', error)
+      })
+    },
+    pubmedQueryOnIds: function(keastIds){
+      if(!keastIds || keastIds.length === 0) return
+      const sql = this.buildPubmedSqlStatement(keastIds)
+      this.flatmapQuery(sql).then(data=>{
+        this.responseData = data
+        // Create pubmed url on paths if we have them
+        if (data.values.length > 0){
+          this.$emit('pubmedSearchUrl', this.pubmedSearchUrl(data.values.map(id=>this.stripPMIDPrefix(id[0]))))
+        } else { // Create pubmed url on models
+          this.pubmedQueryOnModels(this.entry.source)
+        }
+      })
+    },
+    pubmedQueryOnModels(source){
+      this.flatmapQuery(this.buildPubmedSqlStatementForModels(source)).then(data=>{
+        if (Array.isArray(data.values) && data.values.length > 0){
+          this.$emit('pubmedSearchUrl', this.pubmedSearchUrl(data.values.map(id=>this.stripPMIDPrefix(id[0]))))
+        } else {
+          this.$emit('pubmedSearchUrl', '') // Clears the pubmed search button 
+        } 
+      })
+    },
+    pubmedSearchUrl: function(ids) {
+      let url = 'https://pubmed.ncbi.nlm.nih.gov/?'
+      let params = new URLSearchParams()
+      params.append('term', ids)
+      return url + params.toString()
+    }
+  }
+};
+</script>
+
+<style scoped lang="scss">
+@import "~element-ui/packages/theme-chalk/src/link";
+@import "~element-ui/packages/theme-chalk/src/carousel";
+@import "~element-ui/packages/theme-chalk/src/carousel-item";
+
+.attribute-title{
+  font-size: 16px;
+  font-weight: 600;
+  /* font-weight: bold; */
+  text-transform: uppercase;
+}
+
+.attribute-content{
+  font-size: 14px;
+  font-weight: 400;
+}
+
+.el-link {
+  color: $app-primary-color;
+  text-decoration: none;
+  word-wrap: break-word;
+  &:hover, &:focus{
+    color: $app-primary-color;
+    text-decoration: underline;
+  }
+}
+
+::v-deep .el-carousel__button {
+  background-color: $app-primary-color;  
+}
+
+.button {
+  margin-left: 0px !important;
+  margin-top: 0px !important;
+  font-size: 14px !important;
+  background-color: $app-primary-color;
+  color: #fff;
+  &:hover{
+    color: #fff !important;
+    background: #ac76c5 !important;
+    border: 1px solid #ac76c5 !important;
+  }
+  &+.button {
+    margin-top: 10px !important;
+    background-color: $app-primary-color;
+    color: #fff; 
+  }
+}
+
 </style>

package/src/components/SelectionsGroup.vue

@@ -0,0 +1,225 @@
+<template>
+  <div class="selections-container">
+    <el-row>
+      <el-col :span="12">
+        <div class="checkall-display-text">{{title}}</div>
+      </el-col>
+      <el-col :span="12">
+        <el-checkbox
+          v-if="selections && selections.length > 1"
+          class="all-checkbox"
+          :indeterminate="isIndeterminate"
+          v-model="checkAll"
+          @change="handleCheckAllChange"
+        >Display all</el-checkbox>
+      </el-col>
+    </el-row>
+    <el-checkbox-group
+      v-model="checkedItems"
+      size="small"
+      class="checkbox-group"
+      @change="handleCheckedItemsChange"
+    >
+      <div class="checkbox-group-inner">
+        <el-row v-for="item in selections" :key="item[identifierKey]" :label="item[identifierKey]">
+          <div class="checkbox-container">
+            <el-checkbox
+              class="my-checkbox"
+              :label="item[identifierKey]"
+              @change="visibilityToggle(item[identifierKey], $event)"
+              :checked="!(('enable' in item) && item.enable === false)">
+              <div class="path-visual" :style="getVisualStyles(item)"></div>
+              {{item[labelKey]}}
+            </el-checkbox>
+          </div>
+        </el-row>
+      </div>
+    </el-checkbox-group>
+  </div>
+</template>
+
+<script>
+/* eslint-disable no-alert, no-console */
+import Vue from "vue";
+import {
+  Checkbox,
+  CheckboxGroup,
+  Col,
+  Row
+} from "element-ui";
+import lang from "element-ui/lib/locale/lang/en";
+import locale from "element-ui/lib/locale";
+
+locale.use(lang);
+Vue.use(Checkbox);
+Vue.use(CheckboxGroup);
+Vue.use(Col);
+Vue.use(Row);
+
+
+export default {
+  name: "SelectionsGroup",
+  methods: {
+    /**
+     * Function to toggle paths to default.
+     * Also called when the associated button is pressed.
+     */
+    reset: function() {
+      this.checkAll = true;
+      this.checkedItems = [];
+      this.selections.forEach(item => {
+        if (!(('enable' in item) && item.enable === false)) {
+          this.checkedItems.push(item[this.identifierKey]);
+        } else {
+          this.checkAll = false;
+        }
+      });
+    },
+    visibilityToggle: function(key, value) {
+      this.$emit("changed", {key, value});
+    },
+    handleCheckedItemsChange: function(value) {
+      let checkedCount = value.length;
+      this.checkAll = checkedCount === this.selections.length;
+    },
+    handleCheckAllChange(val) {
+      this.checkedItems = val ? this.selections.map(a => a[this.identifierKey]) : [];
+      this.$emit("checkAll",
+      {
+        keys: this.selections.map(a => a[this.identifierKey]),
+        value: val
+      });
+    },
+    getVisualStyles(item) {
+      if ('colour' in item) {
+        if (('dashed' in item) && (item.dashed === true)) {
+          const background = `repeating-linear-gradient(90deg,${item.colour},${item.colour} 6px,transparent 0,transparent 9px)`;
+          return {'background':background};
+        }
+        else {
+          const background = item.colour;
+          return {background};
+        }
+      }
+      return {};
+    }
+  },
+  props: {
+    identifierKey: {
+      type: String,
+      default: "id"
+    },
+    labelKey: {
+      type: String,
+      default: "label"
+    },
+    title: {
+      type: String,
+      default: ""
+    },
+    selections: {
+      type: Array,
+      default: function() {
+        return [];
+      },
+    },
+  },
+  computed: {
+    isIndeterminate: function() {
+      const count = this.checkedItems.length;
+      if ((count === 0) || this.checkAll){
+        return false;
+      }
+      return true;
+    }
+  },
+  data: function() {
+    return {
+      checkedItems: [],
+      checkAll: true,
+    };
+  },
+  mounted: function() {
+    this.reset();
+  }
+};
+</script>
+
+<!-- Add "scoped" attribute to limit CSS to this component only -->
+<style scoped lang="scss">
+@import "~element-ui/packages/theme-chalk/src/checkbox";
+@import "~element-ui/packages/theme-chalk/src/checkbox-group";
+@import "~element-ui/packages/theme-chalk/src/row";
+
+.selection-container {
+  margin-top:5px;
+}
+
+.path-visual {
+  margin: 3px 0;
+  height: 3px;
+  width: 25px;
+  margin-right: 5px;
+  display: inline-block;
+}
+
+.checkall-display-text {
+  width: 59px;
+  height: 20px;
+  color: rgb(48, 49, 51);
+  font-size: 14px;
+  font-weight: normal;
+  line-height: 20px;
+  margin-left: 8px;
+}
+
+.all-checkbox {
+  float: right;
+}
+
+.checkbox-container {
+  display: flex;
+  cursor: pointer;
+}
+
+.checkbox-group {
+  width: 260px;
+  border: 1px solid rgb(144, 147, 153);
+  border-radius: 4px;
+  background: #ffffff;
+}
+
+.my-checkbox {
+  background-color: #fff;
+  width: 100%;
+}
+
+.checkbox-group-inner {
+  padding: 18px;
+}
+
+::v-deep .el-checkbox__label {
+  padding-left: 5px;
+  color: $app-primary-color;
+  font-size: 12px;
+  font-weight: 500;
+  letter-spacing: 0px;
+  line-height: 14px;
+}
+
+::v-deep .el-checkbox__input {
+  &.is-indeterminate,
+  &.is-checked {
+    .el-checkbox__inner {
+      background-color: $app-primary-color;
+      border-color: $app-primary-color;
+    }
+  }
+}
+
+::v-deep .el-checkbox__label {
+  color: $app-primary-color !important;
+}
+
+</style>
+