@abi-software/flatmapvuer 0.3.0-beta-2 → 0.3.0-beta-2-upstream-downstream
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +201 -201
- package/README.md +105 -105
- package/babel.config.js +14 -14
- package/dist/flatmapvuer.common.js +175 -117
- package/dist/flatmapvuer.common.js.map +1 -1
- package/dist/flatmapvuer.css +1 -1
- package/dist/flatmapvuer.umd.js +175 -117
- package/dist/flatmapvuer.umd.js.map +1 -1
- package/dist/flatmapvuer.umd.min.js +1 -1
- package/dist/flatmapvuer.umd.min.js.map +1 -1
- package/package-lock.json +13923 -13916
- package/package.json +66 -66
- package/public/index.html +17 -17
- package/src/App.vue +161 -161
- package/src/assets/_variables.scss +43 -43
- package/src/assets/styles.scss +7 -7
- package/src/components/EventBus.js +2 -2
- package/src/components/FlatmapVuer.vue +1326 -1311
- package/src/components/MultiFlatmapVuer.vue +349 -349
- package/src/components/PubmedViewer.vue +194 -194
- package/src/components/Tooltip.vue +481 -437
- package/src/components/index.js +9 -9
- package/src/icons/fonts/mapicon-species.eot +0 -0
- package/src/icons/fonts/mapicon-species.svg +14 -14
- package/src/icons/fonts/mapicon-species.ttf +0 -0
- package/src/icons/fonts/mapicon-species.woff +0 -0
- package/src/icons/mapicon-species-style.css +42 -42
- package/src/main.js +8 -8
- package/src/nerve-map.js +99 -0
- package/vue.config.js +31 -31
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/* harmony import */ var _node_modules_mini_css_extract_plugin_dist_loader_js_ref_8_oneOf_1_0_node_modules_css_loader_dist_cjs_js_ref_8_oneOf_1_1_node_modules_vue_loader_lib_loaders_stylePostLoader_js_node_modules_postcss_loader_src_index_js_ref_8_oneOf_1_2_node_modules_sass_loader_dist_cjs_js_ref_8_oneOf_1_3_node_modules_cache_loader_dist_cjs_js_ref_0_0_node_modules_vue_loader_lib_index_js_vue_loader_options_FlatmapVuer_vue_vue_type_style_index_0_id_db38767a_scoped_true_lang_scss___WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__("c017");
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/* harmony import */ var _node_modules_mini_css_extract_plugin_dist_loader_js_ref_8_oneOf_1_0_node_modules_css_loader_dist_cjs_js_ref_8_oneOf_1_1_node_modules_vue_loader_lib_loaders_stylePostLoader_js_node_modules_postcss_loader_src_index_js_ref_8_oneOf_1_2_node_modules_sass_loader_dist_cjs_js_ref_8_oneOf_1_3_node_modules_cache_loader_dist_cjs_js_ref_0_0_node_modules_vue_loader_lib_index_js_vue_loader_options_FlatmapVuer_vue_vue_type_style_index_0_id_db38767a_scoped_true_lang_scss___WEBPACK_IMPORTED_MODULE_0___default = /*#__PURE__*/__webpack_require__.n(_node_modules_mini_css_extract_plugin_dist_loader_js_ref_8_oneOf_1_0_node_modules_css_loader_dist_cjs_js_ref_8_oneOf_1_1_node_modules_vue_loader_lib_loaders_stylePostLoader_js_node_modules_postcss_loader_src_index_js_ref_8_oneOf_1_2_node_modules_sass_loader_dist_cjs_js_ref_8_oneOf_1_3_node_modules_cache_loader_dist_cjs_js_ref_0_0_node_modules_vue_loader_lib_index_js_vue_loader_options_FlatmapVuer_vue_vue_type_style_index_0_id_db38767a_scoped_true_lang_scss___WEBPACK_IMPORTED_MODULE_0__);
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/* harmony import */ var _node_modules_mini_css_extract_plugin_dist_loader_js_ref_8_oneOf_1_0_node_modules_css_loader_dist_cjs_js_ref_8_oneOf_1_1_node_modules_vue_loader_lib_loaders_stylePostLoader_js_node_modules_postcss_loader_src_index_js_ref_8_oneOf_1_2_node_modules_sass_loader_dist_cjs_js_ref_8_oneOf_1_3_node_modules_cache_loader_dist_cjs_js_ref_0_0_node_modules_vue_loader_lib_index_js_vue_loader_options_Tooltip_vue_vue_type_style_index_0_id_1a81b242_scoped_true_lang_scss___WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__("7db6");
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/* harmony import */ var _node_modules_mini_css_extract_plugin_dist_loader_js_ref_8_oneOf_1_0_node_modules_css_loader_dist_cjs_js_ref_8_oneOf_1_1_node_modules_vue_loader_lib_loaders_stylePostLoader_js_node_modules_postcss_loader_src_index_js_ref_8_oneOf_1_2_node_modules_sass_loader_dist_cjs_js_ref_8_oneOf_1_3_node_modules_cache_loader_dist_cjs_js_ref_0_0_node_modules_vue_loader_lib_index_js_vue_loader_options_Tooltip_vue_vue_type_style_index_0_id_1a81b242_scoped_true_lang_scss___WEBPACK_IMPORTED_MODULE_0___default = /*#__PURE__*/__webpack_require__.n(_node_modules_mini_css_extract_plugin_dist_loader_js_ref_8_oneOf_1_0_node_modules_css_loader_dist_cjs_js_ref_8_oneOf_1_1_node_modules_vue_loader_lib_loaders_stylePostLoader_js_node_modules_postcss_loader_src_index_js_ref_8_oneOf_1_2_node_modules_sass_loader_dist_cjs_js_ref_8_oneOf_1_3_node_modules_cache_loader_dist_cjs_js_ref_0_0_node_modules_vue_loader_lib_index_js_vue_loader_options_Tooltip_vue_vue_type_style_index_0_id_1a81b242_scoped_true_lang_scss___WEBPACK_IMPORTED_MODULE_0__);
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/* harmony import */ var _node_modules_mini_css_extract_plugin_dist_loader_js_ref_8_oneOf_1_0_node_modules_css_loader_dist_cjs_js_ref_8_oneOf_1_1_node_modules_vue_loader_lib_loaders_stylePostLoader_js_node_modules_postcss_loader_src_index_js_ref_8_oneOf_1_2_node_modules_sass_loader_dist_cjs_js_ref_8_oneOf_1_3_node_modules_cache_loader_dist_cjs_js_ref_0_0_node_modules_vue_loader_lib_index_js_vue_loader_options_FlatmapVuer_vue_vue_type_style_index_0_id_032efe9d_scoped_true_lang_scss___WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__("896e");
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/* harmony import */ var _node_modules_mini_css_extract_plugin_dist_loader_js_ref_8_oneOf_1_0_node_modules_css_loader_dist_cjs_js_ref_8_oneOf_1_1_node_modules_vue_loader_lib_loaders_stylePostLoader_js_node_modules_postcss_loader_src_index_js_ref_8_oneOf_1_2_node_modules_sass_loader_dist_cjs_js_ref_8_oneOf_1_3_node_modules_cache_loader_dist_cjs_js_ref_0_0_node_modules_vue_loader_lib_index_js_vue_loader_options_FlatmapVuer_vue_vue_type_style_index_0_id_032efe9d_scoped_true_lang_scss___WEBPACK_IMPORTED_MODULE_0___default = /*#__PURE__*/__webpack_require__.n(_node_modules_mini_css_extract_plugin_dist_loader_js_ref_8_oneOf_1_0_node_modules_css_loader_dist_cjs_js_ref_8_oneOf_1_1_node_modules_vue_loader_lib_loaders_stylePostLoader_js_node_modules_postcss_loader_src_index_js_ref_8_oneOf_1_2_node_modules_sass_loader_dist_cjs_js_ref_8_oneOf_1_3_node_modules_cache_loader_dist_cjs_js_ref_0_0_node_modules_vue_loader_lib_index_js_vue_loader_options_FlatmapVuer_vue_vue_type_style_index_0_id_032efe9d_scoped_true_lang_scss___WEBPACK_IMPORTED_MODULE_0__);
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/* harmony import */ var _node_modules_mini_css_extract_plugin_dist_loader_js_ref_8_oneOf_1_0_node_modules_css_loader_dist_cjs_js_ref_8_oneOf_1_1_node_modules_vue_loader_lib_loaders_stylePostLoader_js_node_modules_postcss_loader_src_index_js_ref_8_oneOf_1_2_node_modules_sass_loader_dist_cjs_js_ref_8_oneOf_1_3_node_modules_cache_loader_dist_cjs_js_ref_0_0_node_modules_vue_loader_lib_index_js_vue_loader_options_Tooltip_vue_vue_type_style_index_0_id_212c9d5b_scoped_true_lang_scss___WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__("52d1");
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/* harmony import */ var _node_modules_mini_css_extract_plugin_dist_loader_js_ref_8_oneOf_1_0_node_modules_css_loader_dist_cjs_js_ref_8_oneOf_1_1_node_modules_vue_loader_lib_loaders_stylePostLoader_js_node_modules_postcss_loader_src_index_js_ref_8_oneOf_1_2_node_modules_sass_loader_dist_cjs_js_ref_8_oneOf_1_3_node_modules_cache_loader_dist_cjs_js_ref_0_0_node_modules_vue_loader_lib_index_js_vue_loader_options_Tooltip_vue_vue_type_style_index_0_id_212c9d5b_scoped_true_lang_scss___WEBPACK_IMPORTED_MODULE_0___default = /*#__PURE__*/__webpack_require__.n(_node_modules_mini_css_extract_plugin_dist_loader_js_ref_8_oneOf_1_0_node_modules_css_loader_dist_cjs_js_ref_8_oneOf_1_1_node_modules_vue_loader_lib_loaders_stylePostLoader_js_node_modules_postcss_loader_src_index_js_ref_8_oneOf_1_2_node_modules_sass_loader_dist_cjs_js_ref_8_oneOf_1_3_node_modules_cache_loader_dist_cjs_js_ref_0_0_node_modules_vue_loader_lib_index_js_vue_loader_options_Tooltip_vue_vue_type_style_index_0_id_212c9d5b_scoped_true_lang_scss___WEBPACK_IMPORTED_MODULE_0__);
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// CONCATENATED MODULE: ./node_modules/cache-loader/dist/cjs.js?{"cacheDirectory":"node_modules/.cache/vue-loader","cacheIdentifier":"cfef1d3c-vue-loader-template"}!./node_modules/vue-loader/lib/loaders/templateLoader.js??vue-loader-options!./node_modules/cache-loader/dist/cjs.js??ref--0-0!./node_modules/vue-loader/lib??vue-loader-options!./src/components/FlatmapVuer.vue?vue&type=template&id=db38767a&scoped=true&
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var render = function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',{directives:[{name:"loading",rawName:"v-loading",value:(_vm.loading),expression:"loading"}],staticClass:"flatmap-container",attrs:{"element-loading-text":"Loading...","element-loading-spinner":"el-icon-loading","element-loading-background":"rgba(0, 0, 0, 0.3)"}},[_c('map-svg-sprite-color'),_c('div',{staticStyle:{"height":"100%","width":"100%","position":"relative","overflow-y":"none"}},[_c('div',{ref:"display",staticStyle:{"height":"100%","width":"100%"}}),(_vm.displayWarning)?_c('el-popover',{ref:"warningPopover",attrs:{"content":_vm.warningMessage,"placement":"right","appendToBody":false,"trigger":"manual","popper-class":"warning-popper flatmap-popper right-popper"},model:{value:(_vm.hoverVisibilities[6].value),callback:function ($$v) {_vm.$set(_vm.hoverVisibilities[6], "value", $$v)},expression:"hoverVisibilities[6].value"}}):_vm._e(),(_vm.displayWarning)?_c('i',{directives:[{name:"popover",rawName:"v-popover:warningPopover",arg:"warningPopover"}],staticClass:"el-icon-warning warning-icon",on:{"mouseover":function($event){return _vm.showToolitip(6)},"mouseout":function($event){return _vm.hideToolitip(6)}}},[_c('span',{staticClass:"warning-text"},[_vm._v("Beta")])]):_vm._e(),_c('div',{staticClass:"bottom-right-control"},[_c('el-popover',{attrs:{"content":"Zoom in","placement":"left","appendToBody":false,"trigger":"manual","popper-class":"flatmap-popper left-popper"},model:{value:(_vm.hoverVisibilities[0].value),callback:function ($$v) {_vm.$set(_vm.hoverVisibilities[0], "value", $$v)},expression:"hoverVisibilities[0].value"}},[_c('map-svg-icon',{staticClass:"icon-button zoomIn",attrs:{"slot":"reference","icon":"zoomIn"},nativeOn:{"click":function($event){return _vm.zoomIn()},"mouseover":function($event){return _vm.showToolitip(0)},"mouseout":function($event){return _vm.hideToolitip(0)}},slot:"reference"})],1),_c('el-popover',{attrs:{"content":"Zoom out","placement":"top-end","appendToBody":false,"trigger":"manual","popper-class":"flatmap-popper popper-zoomout"},model:{value:(_vm.hoverVisibilities[1].value),callback:function ($$v) {_vm.$set(_vm.hoverVisibilities[1], "value", $$v)},expression:"hoverVisibilities[1].value"}},[_c('map-svg-icon',{staticClass:"icon-button zoomOut",attrs:{"slot":"reference","icon":"zoomOut"},nativeOn:{"click":function($event){return _vm.zoomOut()},"mouseover":function($event){return _vm.showToolitip(1)},"mouseout":function($event){return _vm.hideToolitip(1)}},slot:"reference"})],1),_c('el-popover',{attrs:{"content":"Reset","placement":"top","appendToBody":false,"trigger":"manual","popper-class":"flatmap-popper"},model:{value:(_vm.hoverVisibilities[2].value),callback:function ($$v) {_vm.$set(_vm.hoverVisibilities[2], "value", $$v)},expression:"hoverVisibilities[2].value"}},[_c('div',[_vm._v(" Fit to "),_c('br'),_vm._v(" window ")]),_c('map-svg-icon',{staticClass:"icon-button fitWindow",attrs:{"slot":"reference","icon":"fitWindow"},nativeOn:{"click":function($event){return _vm.resetView()},"mouseover":function($event){return _vm.showToolitip(2)},"mouseout":function($event){return _vm.hideToolitip(2)}},slot:"reference"})],1)],1),_c('el-popover',{ref:"checkBoxPopover",attrs:{"content":"Change pathway visibility","placement":"right","appendToBody":false,"trigger":"manual","popper-class":"flatmap-popper right-popper"},model:{value:(_vm.hoverVisibilities[4].value),callback:function ($$v) {_vm.$set(_vm.hoverVisibilities[4], "value", $$v)},expression:"hoverVisibilities[4].value"}}),_c('div',{staticClass:"pathway-location",class:{ open: _vm.drawerOpen, close: !_vm.drawerOpen }},[(_vm.pathways.length > 0 && _vm.pathControls)?_c('div',{directives:[{name:"popover",rawName:"v-popover:checkBoxPopover",arg:"checkBoxPopover"}],staticClass:"pathway-container"},[_c('el-popover',{ref:"markerPopover",attrs:{"content":"Find these markers for data","placement":"right","appendToBody":false,"trigger":"manual","popper-class":"flatmap-popper popper-bump-right right-popper"},model:{value:(_vm.hoverVisibilities[5].value),callback:function ($$v) {_vm.$set(_vm.hoverVisibilities[5], "value", $$v)},expression:"hoverVisibilities[5].value"}}),_c('div',{directives:[{name:"show",rawName:"v-show",value:(_vm.hoverVisibilities[5].value),expression:"hoverVisibilities[5].value"},{name:"popover",rawName:"v-popover:markerPopover",arg:"markerPopover"}],staticClass:"flatmap-marker-help",domProps:{"innerHTML":_vm._s(_vm.flatmapMarker)}}),_c('el-row',[_c('el-col',{attrs:{"span":12}},[_c('div',{staticClass:"pathways-display-text"},[_vm._v("Pathways")])]),_c('el-col',{attrs:{"span":12}},[_c('el-checkbox',{staticClass:"all-checkbox",attrs:{"indeterminate":_vm.isIndeterminate},on:{"change":_vm.handleCheckAllChange},model:{value:(_vm.checkAll),callback:function ($$v) {_vm.checkAll=$$v},expression:"checkAll"}},[_vm._v("Display all")])],1)],1),_c('el-checkbox-group',{staticClass:"checkbox-group",attrs:{"size":"small"},on:{"change":_vm.handleCheckedItemsChange},model:{value:(_vm.checkedItems),callback:function ($$v) {_vm.checkedItems=$$v},expression:"checkedItems"}},[_c('div',{staticClass:"checkbox-group-inner"},_vm._l((_vm.pathways),function(item){return _c('el-row',{key:item.type,attrs:{"label":item.type}},[_c('div',{staticClass:"checkbox-container"},[_c('el-checkbox',{staticClass:"my-checkbox",attrs:{"label":item.type,"checked":true},on:{"change":function($event){return _vm.visibilityToggle()}}},[_c('div',{staticClass:"path-visual",class:item.type}),_vm._v(" "+_vm._s(item.label)+" ")])],1)])}),1)])],1):_vm._e(),_c('div',{staticClass:"drawer-button",class:{ open: _vm.drawerOpen, close: !_vm.drawerOpen },on:{"click":_vm.toggleDrawer}},[_c('i',{staticClass:"el-icon-arrow-left"})])]),_c('el-popover',{ref:"backgroundPopover",attrs:{"placement":"top-start","width":"175","appendToBody":false,"trigger":"click","popper-class":"background-popper"}},[_c('el-row',{staticClass:"backgroundText"},[_vm._v("Organs display")]),_c('el-row',{staticClass:"backgroundControl"},[_c('el-radio-group',{staticClass:"flatmap-radio",on:{"change":_vm.setColour},model:{value:(_vm.colourRadio),callback:function ($$v) {_vm.colourRadio=$$v},expression:"colourRadio"}},[_c('el-radio',{attrs:{"label":true}},[_vm._v("Colour")]),_c('el-radio',{attrs:{"label":false}},[_vm._v("Greyscale")])],1)],1),_c('el-row',{staticClass:"backgroundSpacer"}),_c('el-row',{staticClass:"backgroundText"},[_vm._v("Outlines display")]),_c('el-row',{staticClass:"backgroundControl"},[_c('el-radio-group',{staticClass:"flatmap-radio",on:{"change":_vm.setOutlines},model:{value:(_vm.outlinesRadio),callback:function ($$v) {_vm.outlinesRadio=$$v},expression:"outlinesRadio"}},[_c('el-radio',{attrs:{"label":true}},[_vm._v("Show")]),_c('el-radio',{attrs:{"label":false}},[_vm._v("Hide")])],1)],1),_c('el-row',{staticClass:"backgroundSpacer"}),_c('el-row',{staticClass:"backgroundText"},[_vm._v("Change background")]),_c('el-row',{staticClass:"backgroundControl"},_vm._l((_vm.availableBackground),function(item){return _c('div',{key:item,class:['backgroundChoice', item, item == _vm.currentBackground ? 'active' :''],on:{"click":function($event){return _vm.backgroundChangeCallback(item)}}})}),0)],1),_c('el-popover',{attrs:{"content":"Change background color","placement":"right","appendToBody":false,"trigger":"manual","popper-class":"flatmap-popper right-popper"},model:{value:(_vm.hoverVisibilities[3].value),callback:function ($$v) {_vm.$set(_vm.hoverVisibilities[3], "value", $$v)},expression:"hoverVisibilities[3].value"}},[_c('map-svg-icon',{directives:[{name:"popover",rawName:"v-popover:backgroundPopover",arg:"backgroundPopover"}],staticClass:"icon-button background-colour",class:{ open: _vm.drawerOpen, close: !_vm.drawerOpen },attrs:{"slot":"reference","icon":"changeBckgd"},nativeOn:{"mouseover":function($event){return _vm.showToolitip(3)},"mouseout":function($event){return _vm.hideToolitip(3)}},slot:"reference"})],1),_c('Tooltip',{ref:"tooltip",staticClass:"tooltip",attrs:{"content":_vm.tooltipContent},on:{"resource-selected":_vm.resourceSelected}})],1)],1)}
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var Tooltipvue_type_template_id_212c9d5b_scoped_true_render = function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',{staticClass:"tooltip-container"},[(_vm.content)?_c('el-main',{directives:[{name:"loading",rawName:"v-loading",value:(_vm.loading),expression:"loading"}],staticClass:"main"},[(_vm.content.title)?_c('div',{staticClass:"block"},[_c('span',{staticClass:"title"},[_vm._v(_vm._s(_vm.capitalise(_vm.content.title)))])]):_c('div',{staticClass:"block"},[_c('span',{staticClass:"title"},[_vm._v(_vm._s(_vm.content.featureId))])]),(_vm.content.featureIds)?_c('pubmed-viewer',{directives:[{name:"show",rawName:"v-show",value:(false),expression:"false"}],staticClass:"block",attrs:{"entry":_vm.content},on:{"pubmedSearchUrl":_vm.pubmedSearchUrlUpdate}}):_vm._e(),_vm._v(" "+_vm._s(_vm.content.paths)+" "),(this.components)?_c('div',{staticClass:"block"},[_c('div',{staticClass:"attribute-title"},[_vm._v("Components")]),_vm._l((_vm.components),function(component){return _c('div',{key:component,staticClass:"attribute-content"},[_vm._v(" "+_vm._s(_vm.capitalise(component))+" ")])})],2):_vm._e(),(this.origins)?_c('div',{staticClass:"block"},[_c('div',{staticClass:"attribute-title"},[_vm._v("Origin "),_c('el-popover',{attrs:{"width":"250","trigger":"hover","append-to-body":false,"popper-class":"popover-origin-help"}},[_c('i',{staticClass:"el-icon-warning-outline info",attrs:{"slot":"reference"},slot:"reference"}),_c('div',[_vm._v(" Origin is the point of the neuron path closest to the brain (or spinal cord) ")])])],1),_vm._l((_vm.origins),function(origin){return _c('div',{key:origin,staticClass:"attribute-content"},[_vm._v(" "+_vm._s(_vm.capitalise(origin))+" ")])}),_c('el-button',{directives:[{name:"show",rawName:"v-show",value:(_vm.originsWithDatasets.length > 0),expression:"originsWithDatasets.length > 0"}],staticClass:"button",on:{"click":_vm.openDendrites}},[_vm._v(" Explore origin data ")])],2):_vm._e(),(this.destinations)?_c('div',{staticClass:"block"},[_c('div',{staticClass:"attribute-title"},[_vm._v("Destination "),_c('el-popover',{attrs:{"width":"250","trigger":"hover","append-to-body":false,"popper-class":"popover-origin-help"}},[_c('i',{staticClass:"el-icon-warning-outline info",attrs:{"slot":"reference"},slot:"reference"}),_c('div',[_vm._v(" Destination is the point of the neuron path furthest from the brain (or spinal cord) ")])])],1),_vm._l((_vm.destinations),function(destination){return _c('div',{key:destination,staticClass:"attribute-content"},[_vm._v(" "+_vm._s(_vm.capitalise(destination))+" ")])}),_c('el-button',{directives:[{name:"show",rawName:"v-show",value:(_vm.destinationsWithDatasets.length > 0),expression:"destinationsWithDatasets.length > 0"}],staticClass:"button",on:{"click":_vm.openAxons}},[_vm._v(" Explore destination data ")])],2):_vm._e(),(_vm.content.uberon)?_c('div',{staticClass:"block"},[_c('div',{staticClass:"attribute-title"},[_vm._v("Feature Id")]),_c('span',{staticClass:"attribute-content"},[_vm._v(_vm._s(_vm.content.uberon))])]):_vm._e(),_c('el-button',{directives:[{name:"show",rawName:"v-show",value:(_vm.componentsWithDatasets.length > 0),expression:"componentsWithDatasets.length > 0"}],staticClass:"button",on:{"click":_vm.openAll}},[_vm._v(" Search for data on components ")]),(_vm.pubmedSearchUrl)?_c('el-button',{staticClass:"button",attrs:{"icon":"el-icon-notebook-2"},on:{"click":function($event){return _vm.openUrl(_vm.pubmedSearchUrl)}}},[_vm._v(" Open publications in pubmed ")]):_vm._e()],1):_vm._e()],1)}
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var PubmedViewervue_type_template_id_1d12a6d3_scoped_true_render = function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',{staticClass:"pubmed-container"},[_c('div',{directives:[{name:"loading",rawName:"v-loading",value:(_vm.loading.response),expression:"loading.response"}],staticClass:"block"},[_c('div',{staticClass:"attribute-title"},[_vm._v("Pubmed Resources")]),_c('br'),_c('el-carousel',{attrs:{"autoplay":false,"indicator-position":"outside","height":"250px","width":"200px"}},_vm._l((_vm.pubmeds),function(pub,i){return _c('el-carousel-item',{key:i},[_c('div',{staticClass:"attribute-content"},[_c('div',{domProps:{"innerHTML":_vm._s(pub.html)}}),_c('el-link',{staticClass:"el-link",attrs:{"href":pub.url,"underline":false,"target":"_blank"}},[_vm._v(_vm._s(pub.url))])],1)])}),1)],1)])}
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// EXTERNAL MODULE: ./src/components/Tooltip.vue?vue&type=style&index=0&id=
|
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var
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// EXTERNAL MODULE: ./src/components/Tooltip.vue?vue&type=style&index=0&id=212c9d5b&scoped=true&lang=scss&
|
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var Tooltipvue_type_style_index_0_id_212c9d5b_scoped_true_lang_scss_ = __webpack_require__("e025");
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// CONCATENATED MODULE: ./src/components/Tooltip.vue
|
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@@ -15791,11 +15833,11 @@ var Tooltipvue_type_style_index_0_id_1a81b242_scoped_true_lang_scss_ = __webpack
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var Tooltip_component = normalizeComponent(
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components_Tooltipvue_type_script_lang_js_,
|
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-
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Tooltipvue_type_template_id_212c9d5b_scoped_true_render,
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Tooltipvue_type_template_id_212c9d5b_scoped_true_staticRenderFns,
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false,
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null,
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)
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@@ -16116,8 +16158,8 @@ var mapResize = function mapResize(map) {
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this.drawerOpen = !this.drawerOpen;
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},
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/**
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* Function to toggle colour/greyscale of organs.
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/**
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* Function to toggle colour/greyscale of organs.
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*/
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setColour: function setColour(flag) {
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this.colourRadio = flag;
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@@ -16130,8 +16172,8 @@ var mapResize = function mapResize(map) {
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}
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},
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/**
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* Function to toggle outlines f organs.
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/**
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* Function to toggle outlines f organs.
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*/
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setOutlines: function setOutlines(flag) {
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this.outlineRadio = flag;
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@@ -16144,9 +16186,9 @@ var mapResize = function mapResize(map) {
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}
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},
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/**
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* Function to toggle paths to default.
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* Also called when the associated button is pressed.
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/**
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* Function to toggle paths to default.
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* Also called when the associated button is pressed.
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*/
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resetView: function resetView() {
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if (this.mapImp) {
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@@ -16159,9 +16201,9 @@ var mapResize = function mapResize(map) {
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}
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},
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/**
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* Function to zoom in.
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* Also called when the associated button is pressed.
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/**
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* Function to zoom in.
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* Also called when the associated button is pressed.
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*/
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zoomIn: function zoomIn() {
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if (this.mapImp) {
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@@ -16169,9 +16211,9 @@ var mapResize = function mapResize(map) {
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}
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},
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/**
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* Function to zoom out.
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* Also called when the associated button is pressed.
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/**
|
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* Function to zoom out.
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* Also called when the associated button is pressed.
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*/
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zoomOut: function zoomOut() {
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if (this.mapImp) {
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@@ -16234,14 +16276,16 @@ var mapResize = function mapResize(map) {
|
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},
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// checkNeuronClicked shows a neuron path pop up if a path was recently clicked
|
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|
checkAndCreatePopups: function checkAndCreatePopups(data) {
|
|
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-
if (data.eventType == "click" && this.
|
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|
+
if (data.eventType == "click" && this.hasNeuronTooltip(data)) {
|
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|
+
this.createTooltipFromNeuronCuration(data);
|
|
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|
this.mapImp.showPopup(this.mapImp.modelFeatureIds(data.resource[0])[0], this.$refs.tooltip.$el, {
|
|
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|
-
className: "
|
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+
className: "flatmapvuer-popover",
|
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|
+
positionAtLastClick: true
|
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|
});
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this.
|
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+
this.popUpCssHacks();
|
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}
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},
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|
-
|
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|
+
popUpCssHacks: function popUpCssHacks() {
|
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|
// Below is a hack to remove flatmap tooltips while popup is open
|
|
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|
var ftooltip = document.querySelector(".flatmap-tooltip-popup");
|
|
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|
if (ftooltip) ftooltip.style.display = "none";
|
|
@@ -16255,6 +16299,27 @@ var mapResize = function mapResize(map) {
|
|
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resourceSelected: function resourceSelected(action) {
|
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|
this.$emit("resource-selected", action);
|
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|
},
|
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|
+
hasNeuronTooltip: function hasNeuronTooltip(data) {
|
|
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|
+
// nerve cuff check
|
|
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|
+
if (data.feature.nodeId) {
|
|
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|
+
return true;
|
|
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|
+
} // neural data check
|
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|
+
|
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|
+
|
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|
+
if (data.resource[0]) {
|
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|
+
if (data.resource[0].includes('ilxtr:neuron')) {
|
|
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|
+
return true;
|
|
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|
+
}
|
|
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|
+
} // annotated with datset check
|
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+
|
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|
+
|
|
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|
+
if (data.dataset) {
|
|
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|
+
return true;
|
|
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|
+
} // if there is no cuff, neural data, or dataset we do not display neuron tooltip
|
|
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|
+
|
|
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|
+
|
|
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|
+
return false;
|
|
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|
+
},
|
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|
createTooltipFromNeuronCuration: function createTooltipFromNeuronCuration(data) {
|
|
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|
var feature = data.resource[0];
|
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|
var content = {
|
|
@@ -16264,14 +16329,12 @@ var mapResize = function mapResize(map) {
|
|
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|
distribution: undefined,
|
|
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actions: []
|
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|
};
|
|
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|
-
var foundAnnotations = false;
|
|
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|
this.tooltipVisible = false; // nerve cuff check
|
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|
if (data.feature.nodeId) {
|
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var paths = this.mapImp.nodePathModels(data.feature.nodeId);
|
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if (paths.size > 0) {
|
|
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|
-
foundAnnotations = true;
|
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|
this.tooltipVisible = true;
|
|
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|
this.tooltipContent = content;
|
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this.tooltipContent.uberon = feature;
|
|
@@ -16285,17 +16348,17 @@ var mapResize = function mapResize(map) {
|
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if (feature) {
|
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if (feature.includes('ilxtr:neuron')) {
|
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-
foundAnnotations = true;
|
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|
this.tooltipVisible = true;
|
|
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|
this.tooltipContent = content;
|
|
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|
this.tooltipContent.uberon = feature;
|
|
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|
this.tooltipContent.title = data.label;
|
|
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|
this.tooltipContent.featureIds = [feature];
|
|
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this.tooltipContent.actions.push({
|
|
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|
-
title: "Search for
|
|
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|
+
title: "Search for datasets",
|
|
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|
label: "Neuron Datasets",
|
|
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|
resource: feature.split(":")[1],
|
|
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|
type: "Neuron Search",
|
|
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|
+
feature: feature,
|
|
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|
nervePath: true
|
|
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|
});
|
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|
}
|
|
@@ -16303,7 +16366,6 @@ var mapResize = function mapResize(map) {
|
|
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|
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|
if (data.dataset) {
|
|
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|
-
foundAnnotations = true;
|
|
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|
this.tooltipVisible = true;
|
|
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|
this.tooltipContent = content;
|
|
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|
this.tooltipContent.uberon = feature;
|
|
@@ -16312,15 +16374,10 @@ var mapResize = function mapResize(map) {
|
|
|
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|
title: "View dataset",
|
|
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|
resource: data.dataset,
|
|
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|
type: "URL",
|
|
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|
+
feature: feature,
|
|
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|
nervePath: false
|
|
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|
});
|
|
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|
}
|
|
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|
-
|
|
16319
|
-
if (foundAnnotations) {
|
|
16320
|
-
return true;
|
|
16321
|
-
} else {
|
|
16322
|
-
return false;
|
|
16323
|
-
}
|
|
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16381
|
},
|
|
16325
16382
|
// Keeping this as an API
|
|
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|
showPopup: function showPopup(featureId, node, options) {
|
|
@@ -16331,7 +16388,8 @@ var mapResize = function mapResize(map) {
|
|
|
16331
16388
|
if (!myOptions.className) myOptions.className = "flatmapvuer-popover";
|
|
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|
} else {
|
|
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|
myOptions = {
|
|
16334
|
-
className: "flatmapvuer-popover"
|
|
16391
|
+
className: "flatmapvuer-popover",
|
|
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|
+
positionAtLastClick: true
|
|
16335
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|
};
|
|
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|
}
|
|
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|
|
|
@@ -16485,8 +16543,8 @@ var mapResize = function mapResize(map) {
|
|
|
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|
this.drawerOpen = flag;
|
|
16486
16544
|
},
|
|
16487
16545
|
|
|
16488
|
-
/**
|
|
16489
|
-
* Function to display features with annotation matching the provided term.
|
|
16546
|
+
/**
|
|
16547
|
+
* Function to display features with annotation matching the provided term.
|
|
16490
16548
|
*/
|
|
16491
16549
|
searchAndShowResult: function searchAndShowResult(term) {
|
|
16492
16550
|
if (this.mapImp) {
|
|
@@ -16549,16 +16607,16 @@ var mapResize = function mapResize(map) {
|
|
|
16549
16607
|
default: "Beta feature - This map is based on the connectivity of a rat. New connectivity and species specificity will be added as the SPARC program progress."
|
|
16550
16608
|
},
|
|
16551
16609
|
|
|
16552
|
-
/**
|
|
16553
|
-
* State containing state of the flatmap.
|
|
16610
|
+
/**
|
|
16611
|
+
* State containing state of the flatmap.
|
|
16554
16612
|
*/
|
|
16555
16613
|
state: {
|
|
16556
16614
|
type: Object,
|
|
16557
16615
|
default: undefined
|
|
16558
16616
|
},
|
|
16559
16617
|
|
|
16560
|
-
/**
|
|
16561
|
-
* Specify the endpoint of the flatmap server.
|
|
16618
|
+
/**
|
|
16619
|
+
* Specify the endpoint of the flatmap server.
|
|
16562
16620
|
*/
|
|
16563
16621
|
flatmapAPI: {
|
|
16564
16622
|
type: String,
|
|
@@ -16633,8 +16691,8 @@ var mapResize = function mapResize(map) {
|
|
|
16633
16691
|
});
|
|
16634
16692
|
// CONCATENATED MODULE: ./src/components/FlatmapVuer.vue?vue&type=script&lang=js&
|
|
16635
16693
|
/* harmony default export */ var components_FlatmapVuervue_type_script_lang_js_ = (FlatmapVuervue_type_script_lang_js_);
|
|
16636
|
-
// EXTERNAL MODULE: ./src/components/FlatmapVuer.vue?vue&type=style&index=0&id=
|
|
16637
|
-
var
|
|
16694
|
+
// EXTERNAL MODULE: ./src/components/FlatmapVuer.vue?vue&type=style&index=0&id=db38767a&scoped=true&lang=scss&
|
|
16695
|
+
var FlatmapVuervue_type_style_index_0_id_db38767a_scoped_true_lang_scss_ = __webpack_require__("2ee8");
|
|
16638
16696
|
|
|
16639
16697
|
// CONCATENATED MODULE: ./src/components/FlatmapVuer.vue
|
|
16640
16698
|
|
|
@@ -16651,13 +16709,13 @@ var FlatmapVuer_component = normalizeComponent(
|
|
|
16651
16709
|
staticRenderFns,
|
|
16652
16710
|
false,
|
|
16653
16711
|
null,
|
|
16654
|
-
"
|
|
16712
|
+
"db38767a",
|
|
16655
16713
|
null
|
|
16656
16714
|
|
|
16657
16715
|
)
|
|
16658
16716
|
|
|
16659
16717
|
/* harmony default export */ var FlatmapVuer = (FlatmapVuer_component.exports);
|
|
16660
|
-
// CONCATENATED MODULE: ./node_modules/cache-loader/dist/cjs.js?{"cacheDirectory":"node_modules/.cache/vue-loader","cacheIdentifier":"
|
|
16718
|
+
// CONCATENATED MODULE: ./node_modules/cache-loader/dist/cjs.js?{"cacheDirectory":"node_modules/.cache/vue-loader","cacheIdentifier":"cfef1d3c-vue-loader-template"}!./node_modules/vue-loader/lib/loaders/templateLoader.js??vue-loader-options!./node_modules/cache-loader/dist/cjs.js??ref--0-0!./node_modules/vue-loader/lib??vue-loader-options!./src/components/MultiFlatmapVuer.vue?vue&type=template&id=f20f0c88&scoped=true&
|
|
16661
16719
|
var MultiFlatmapVuervue_type_template_id_f20f0c88_scoped_true_render = function () {var _vm=this;var _h=_vm.$createElement;var _c=_vm._self._c||_h;return _c('div',{staticClass:"multi-container"},[_c('div',{staticStyle:{"position":"absolute","z-index":"10"}},[_c('div',{staticClass:"species-display-text"},[_vm._v(" Species ")]),_c('el-popover',{ref:"selectPopover",attrs:{"content":"Select a species","placement":"right","appendToBody":false,"trigger":"manual","popper-class":"flatmap-popper right-popper"},model:{value:(_vm.helpMode),callback:function ($$v) {_vm.helpMode=$$v},expression:"helpMode"}}),_c('el-select',{directives:[{name:"popover",rawName:"v-popover:selectPopover",arg:"selectPopover"}],staticClass:"select-box",attrs:{"id":"flatmap-select","popper-append-to-body":_vm.appendToBody,"placeholder":"Select","popper-class":"flatmap_dropdown"},on:{"change":_vm.flatmapChanged},model:{value:(_vm.activeSpecies),callback:function ($$v) {_vm.activeSpecies=$$v},expression:"activeSpecies"}},_vm._l((_vm.speciesList),function(item,key){return _c('el-option',{key:key,attrs:{"label":key,"value":key}},[_c('el-row',[_c('el-col',{attrs:{"span":8}},[_c('i',{class:item.iconClass})]),_c('el-col',{attrs:{"span":12}},[_vm._v(_vm._s(key))])],1)],1)}),1)],1),_vm._l((_vm.speciesList),function(item,key){return _c('FlatmapVuer',{directives:[{name:"show",rawName:"v-show",value:(_vm.activeSpecies==key),expression:"activeSpecies==key"}],key:key,ref:key,refInFor:true,staticStyle:{"height":"100%"},attrs:{"showLayer":_vm.showLayer,"entry":item.taxo,"displayWarning":item.displayWarning,"warningMessage":_vm.warningMessage,"featureInfo":_vm.featureInfo,"minZoom":_vm.minZoom,"pathControls":_vm.pathControls,"searchable":_vm.searchable,"helpMode":_vm.helpMode,"renderAtMounted":_vm.renderAtMounted,"displayMinimap":_vm.displayMinimap,"flatmapAPI":_vm.flatmapAPI,"sparcAPI":_vm.sparcAPI},on:{"resource-selected":_vm.FlatmapSelected,"ready":_vm.FlatmapReady,"pan-zoom-callback":_vm.panZoomCallback}})})],2)}
|
|
16662
16720
|
var MultiFlatmapVuervue_type_template_id_f20f0c88_scoped_true_staticRenderFns = []
|
|
16663
16721
|
|
|
@@ -16858,11 +16916,11 @@ external_vue_default.a.use(lib_popover_default.a);
|
|
|
16858
16916
|
this.$emit('flatmapChanged', this.activeSpecies);
|
|
16859
16917
|
},
|
|
16860
16918
|
|
|
16861
|
-
/**
|
|
16862
|
-
* Function used for getting the current states of the scene. This exported states
|
|
16863
|
-
* can be imported using the importStates method.
|
|
16864
|
-
*
|
|
16865
|
-
* @public
|
|
16919
|
+
/**
|
|
16920
|
+
* Function used for getting the current states of the scene. This exported states
|
|
16921
|
+
* can be imported using the importStates method.
|
|
16922
|
+
*
|
|
16923
|
+
* @public
|
|
16866
16924
|
*/
|
|
16867
16925
|
getState: function getState() {
|
|
16868
16926
|
var state = {
|
|
@@ -16874,11 +16932,11 @@ external_vue_default.a.use(lib_popover_default.a);
|
|
|
16874
16932
|
return state;
|
|
16875
16933
|
},
|
|
16876
16934
|
|
|
16877
|
-
/**
|
|
16878
|
-
* Function used for importing the states of the scene. This exported states
|
|
16879
|
-
* can be imported using the read states method.
|
|
16880
|
-
*
|
|
16881
|
-
* @public
|
|
16935
|
+
/**
|
|
16936
|
+
* Function used for importing the states of the scene. This exported states
|
|
16937
|
+
* can be imported using the read states method.
|
|
16938
|
+
*
|
|
16939
|
+
* @public
|
|
16882
16940
|
*/
|
|
16883
16941
|
setState: function setState(state) {
|
|
16884
16942
|
var _this3 = this;
|
|
@@ -16926,9 +16984,9 @@ external_vue_default.a.use(lib_popover_default.a);
|
|
|
16926
16984
|
default: false
|
|
16927
16985
|
},
|
|
16928
16986
|
|
|
16929
|
-
/**
|
|
16930
|
-
* Initial species for the flatmap.
|
|
16931
|
-
* This value will be ignored if a valid state object is provided.
|
|
16987
|
+
/**
|
|
16988
|
+
* Initial species for the flatmap.
|
|
16989
|
+
* This value will be ignored if a valid state object is provided.
|
|
16932
16990
|
*/
|
|
16933
16991
|
initial: {
|
|
16934
16992
|
type: String,
|
|
@@ -16956,16 +17014,16 @@ external_vue_default.a.use(lib_popover_default.a);
|
|
|
16956
17014
|
},
|
|
16957
17015
|
availableSpecies: {},
|
|
16958
17016
|
|
|
16959
|
-
/**
|
|
16960
|
-
* State containing state of the flatmap.
|
|
17017
|
+
/**
|
|
17018
|
+
* State containing state of the flatmap.
|
|
16961
17019
|
*/
|
|
16962
17020
|
state: {
|
|
16963
17021
|
type: Object,
|
|
16964
17022
|
default: undefined
|
|
16965
17023
|
},
|
|
16966
17024
|
|
|
16967
|
-
/**
|
|
16968
|
-
* Specify the endpoint of the flatmap server.
|
|
17025
|
+
/**
|
|
17026
|
+
* Specify the endpoint of the flatmap server.
|
|
16969
17027
|
*/
|
|
16970
17028
|
flatmapAPI: {
|
|
16971
17029
|
type: String,
|