@abi-software/flatmapvuer 0.3.0-beta-2-upstream-downstream-6 → 0.3.1

package/package-lock.json

@@ -1,13 +1,13 @@
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-      "integrity": "sha512-EAPipTNeWsb/3wLPeup1tVPaXfIaU68xMnVdPafIL1TV05OhASArYyIfFvnvJCNrR2NIOvDVNNTFRa+Re2MWyw==",
+      "version": "4.8.1",
+      "resolved": "https://registry.npmjs.org/terser/-/terser-4.8.1.tgz",
+      "integrity": "sha512-4GnLC0x667eJG0ewJTa6z/yXrbLGv80D9Ru6HIpCQmO+Q4PfEtBFi0ObSckqwL6VyQv/7ENJieXHo2ANmdQwgw==",
       "dev": true,
       "requires": {
         "commander": "^2.20.0",

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@abi-software/flatmapvuer",
-  "version": "0.3.0-beta-2-upstream-downstream-6",
+  "version": "0.3.1",
   "main": "./dist/flatmapvuer.common.js",
   "files": [
     "dist/*",
@@ -16,7 +16,7 @@
     "lint": "vue-cli-service lint"
   },
   "dependencies": {
-    "@abi-software/flatmap-viewer": "^2.2.0-beta.14",
+    "@abi-software/flatmap-viewer": "^2.2.0-beta.16",
     "@abi-software/svg-sprite": "^0.1.14",
     "core-js": "^3.3.2",
     "css-element-queries": "^1.2.2",

package/src/App.vue

@@ -91,9 +91,9 @@ export default {
       displayCloseButton: false,
       initial: "Rat",
       helpMode: false,
-      // flatmapAPI: "https://mapcore-demo.org/current/flatmap/v2/"
+      flatmapAPI: "https://mapcore-demo.org/current/flatmap/v2/"
       // flatmapAPI: "https://mapcore-demo.org/devel/flatmap/v3/"
-      flatmapAPI: "https://mapcore-demo.org/fccb/flatmap/"
+      // flatmapAPI: "https://mapcore-demo.org/fccb/flatmap/"
       // flatmapAPI: "https://mapcore-demo.org/devel/flatmap/v1/"
     }
   },

package/src/components/FlatmapVuer.vue

@@ -376,13 +376,13 @@ export default {
         data.eventType == "click" &&
         this.hasNeuronTooltip(data)
       ) {
-        this.createTooltipFromNeuronCuration(data)
+        this.createTooltipFromNeuronCuration(data);
         this.mapImp.showPopup(
           this.mapImp.modelFeatureIds(data.resource[0])[0],
           this.$refs.tooltip.$el,
           { className: "flatmapvuer-popover", positionAtLastClick: true }
         );
-        this.popUpCssHacks()
+        this.popUpCssHacks();
       }
     },
     popUpCssHacks: function() {
@@ -402,11 +402,6 @@ export default {
     },
     hasNeuronTooltip: function(data) {
 
-      // nerve cuff check
-      if (data.feature.nodeId) {
-        return true
-      }
-
       // neural data check
       if (data.resource[0]){
         if (data.resource[0].includes('ilxtr:neuron')){
@@ -434,19 +429,6 @@ export default {
 
       this.tooltipVisible = false;
 
-      // nerve cuff check
-      if (data.feature.nodeId) {
-        let paths = this.mapImp.nodePathModels(data.feature.nodeId);
-        if (paths.size > 0){
-          this.tooltipVisible = true;
-          this.tooltipContent = content;
-          this.tooltipContent.uberon = feature;
-          this.tooltipContent.title = data.label;
-          this.tooltipContent.featureIds = [...paths];
-        }
-        return true
-      }
-
       // neural data check
       if (feature){
         if (feature.includes('ilxtr:neuron')){

package/src/components/Tooltip.vue

@@ -7,74 +7,76 @@
       <div class="block" v-else>
         <span class="title">{{content.featureId}}</span>
       </div>
-      <!-- Currently we don't show the pubmed viewer, will remove once we are certain it won't be used -->
-      <pubmed-viewer v-if="content.featureIds" v-show="false" class="block" :entry="content" @pubmedSearchUrl="pubmedSearchUrlUpdate"/>
-      {{content.paths}}
-      <div v-if="this.origins" class="block">
-        <div>
-          <span class="attribute-title">Origin</span>
-          <el-popover
-          width="250"
-          trigger="hover"
-          :append-to-body=false
-          popper-class="popover-origin-help"
-          >
-          <i slot="reference" class="el-icon-warning-outline info"/>
-          <span style="word-break: keep-all;">
-            <i>Origin</i> {{originDescription}}
-          </span>
-          </el-popover>
+      <div class="content-container scrollbar">
+        <!-- Currently we don't show the pubmed viewer, will remove once we are certain it won't be used -->
+        <pubmed-viewer v-if="content.featureIds" v-show="false" class="block" :entry="content" @pubmedSearchUrl="pubmedSearchUrlUpdate"/>
+        {{content.paths}}
+        <div v-if="this.origins" class="block">
+          <div>
+            <span class="attribute-title">Origin</span>
+            <el-popover
+            width="250"
+            trigger="hover"
+            :append-to-body=false
+            popper-class="popover-origin-help"
+            >
+            <i slot="reference" class="el-icon-warning-outline info"/>
+            <span style="word-break: keep-all;">
+              <i>Origin</i> {{originDescription}}
+            </span>
+            </el-popover>
+          </div>
+          <div v-for="origin in origins" class="attribute-content"  :key="origin">
+            {{ capitalise(origin) }}
+          </div>
+          <el-button v-show="originsWithDatasets.length > 0" class="button" @click="openDendrites">
+            Explore origin data
+          </el-button>
         </div>
-        <div v-for="origin in origins" class="attribute-content"  :key="origin">
-          {{ capitalise(origin) }}
+        <div v-if="this.components" class="block">
+          <div class="attribute-title">Components</div>
+          <div v-for="component in components" class="attribute-content"  :key="component">
+            {{ capitalise(component) }}
+          </div>
         </div>
-        <el-button v-show="originsWithDatasets.length > 0" class="button" @click="openDendrites">
-          Explore origin data
-        </el-button>
-      </div>
-      <div v-if="this.components" class="block">
-        <div class="attribute-title">Components</div>
-        <div v-for="component in components" class="attribute-content"  :key="component">
-          {{ capitalise(component) }}
-        </div>
-      </div>
-      <div v-if="this.destinations" class="block">
-        <div>
-          <span class="attribute-title">Destination</span>
-          <el-popover
-          width="250"
-          trigger="hover"
-          :append-to-body=false
-          popper-class="popover-origin-help"
-          >
-          <i slot="reference" class="el-icon-warning-outline info"/>
-          <span style="word-break: keep-all;">
-          <i>Destination</i> is where the axons terminate
-          </span>
-          </el-popover>
-        </div>
-        <div v-for="destination in destinations" class="attribute-content"  :key="destination">
-          {{ capitalise(destination) }}
+        <div v-if="this.destinations" class="block">
+          <div>
+            <span class="attribute-title">Destination</span>
+            <el-popover
+            width="250"
+            trigger="hover"
+            :append-to-body=false
+            popper-class="popover-origin-help"
+            >
+            <i slot="reference" class="el-icon-warning-outline info"/>
+            <span style="word-break: keep-all;">
+            <i>Destination</i> is where the axons terminate
+            </span>
+            </el-popover>
+          </div>
+          <div v-for="destination in destinations" class="attribute-content"  :key="destination">
+            {{ capitalise(destination) }}
+          </div>
+          <el-button v-show="destinationsWithDatasets.length > 0" class="button" @click="openAxons">
+            Explore destination data
+          </el-button>
         </div>
-        <el-button v-show="destinationsWithDatasets.length > 0" class="button" @click="openAxons">
-          Explore destination data
+
+        <!-- We will serach on components until we can search on neurons -->
+        <el-button v-show="components.length > 0" class="button" @click="openAll">
+          Search for data on components
         </el-button>
-      </div>
 
-      <!-- We will serach on components until we can search on neurons -->
-      <el-button v-show="components.length > 0" class="button" @click="openAll">
-        Search for data on components
-      </el-button>
-
-      <!-- Disable neuron search until it is ready -->
-      <!-- <el-button v-for="action in content.actions" round :key="action.title"
-        class="button" @click="resourceSelected(action)">
-        <i v-if="action.title === 'Search for datasets' || action.title === 'View Dataset' " class="el-icon-coin"></i>
-        {{action.title}}
-      </el-button> -->
-      <el-button  v-if="pubmedSearchUrl" class="button" icon="el-icon-notebook-2" @click="openUrl(pubmedSearchUrl)">
-        Open publications in pubmed
-      </el-button>
+        <!-- Disable neuron search until it is ready -->
+        <!-- <el-button v-for="action in content.actions" round :key="action.title"
+          class="button" @click="resourceSelected(action)">
+          <i v-if="action.title === 'Search for datasets' || action.title === 'View Dataset' " class="el-icon-coin"></i>
+          {{action.title}}
+        </el-button> -->
+        <el-button  v-if="pubmedSearchUrl" class="button" icon="el-icon-notebook-2" @click="openUrl(pubmedSearchUrl)">
+          Open publications in pubmed
+        </el-button>
+      </div>
     </el-main>
   </div>
 </template>
@@ -486,6 +488,29 @@ export default {
   }
 }
 
+.content-container {
+  overflow-y: scroll;
+  scrollbar-width: thin !important;
+  height: 200px;
+}
+
+.scrollbar::-webkit-scrollbar-track {
+  border-radius: 10px;
+  background-color: #f5f5f5;
+}
+
+.scrollbar::-webkit-scrollbar {
+  width: 12px;
+  right: -12px;
+  background-color: #f5f5f5;
+}
+
+.scrollbar::-webkit-scrollbar-thumb {
+  border-radius: 4px;
+  box-shadow: 0 2px 4px 0 rgba(0, 0, 0, 0.06);
+  background-color: #979797;
+}
+
 
 /* Fix for chrome bug where under triangle pops up above one on top of it  */
 .selector:not(*:root), .tooltip-container::after{