@abi-software/flatmapvuer 0.2.3-fixes-2 → 0.2.4-beta-1

package/package-lock.json

@@ -1,6 +1,6 @@
 {
   "name": "@abi-software/flatmapvuer",
-  "version": "0.2.3-fixes-2",
+  "version": "0.2.4-beta-0",
   "lockfileVersion": 1,
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@@ -18,9 +18,9 @@
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@@ -1341,65 +1341,90 @@
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-              "dev": true
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+          "dev": true,
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@@ -6101,9 +6126,9 @@
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@@ -6401,9 +6426,9 @@
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@@ -7689,9 +7714,9 @@
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-      "integrity": "sha1-tIDIkuWaLwWVTOcnvT8qTogvnhM=",
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@@ -7735,14 +7760,14 @@
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-      "resolved": "https://registry.npmjs.org/jsprim/-/jsprim-1.4.1.tgz",
-      "integrity": "sha1-MT5mvB5cwG5Di8G3SZwuXFastqI=",
+      "version": "1.4.2",
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       "dev": true,
       "requires": {
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         "extsprintf": "1.3.0",
-        "json-schema": "0.2.3",
+        "json-schema": "0.4.0",
         "verror": "1.10.0"
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@@ -9997,9 +10022,9 @@
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@@ -10055,9 +10080,9 @@
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@@ -10485,9 +10510,9 @@
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+          "resolved": "https://registry.npmjs.org/nth-check/-/nth-check-2.0.1.tgz",
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           "dev": true,
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@@ -11752,9 +11777,9 @@
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@@ -11817,9 +11842,9 @@
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     "supercluster": {
-      "version": "7.1.3",
-      "resolved": "https://registry.npmjs.org/supercluster/-/supercluster-7.1.3.tgz",
-      "integrity": "sha512-7+bR4FbF5SYsmkHfDp61QiwCKtwNDyPsddk9TzfsDA5DQr5Goii5CVD2SXjglweFCxjrzVZf945ahqYfUIk8UA==",
+      "version": "7.1.4",
+      "resolved": "https://registry.npmjs.org/supercluster/-/supercluster-7.1.4.tgz",
+      "integrity": "sha512-GhKkRM1jMR6WUwGPw05fs66pOFWhf59lXq+Q3J3SxPvhNcmgOtLRV6aVQPMRsmXdpaeFJGivt+t7QXUPL3ff4g==",
       "requires": {
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@@ -13655,45 +13680,12 @@
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+      "resolved": "https://registry.npmjs.org/wide-align/-/wide-align-1.1.5.tgz",
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       "dev": true,
       "requires": {
-        "string-width": "^1.0.2 || 2"
-      },
-      "dependencies": {
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     "word-wrap": {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@abi-software/flatmapvuer",
-  "version": "0.2.3-fixes-2",
+  "version": "0.2.4-beta-1",
   "main": "./dist/flatmapvuer.common.js",
   "files": [
     "dist/*",
@@ -17,7 +17,7 @@
   },
   "dependencies": {
     "@abi-software/flatmap-viewer": "^2.1.0-beta.14",
-    "@abi-software/svg-sprite": "^0.1.11",
+    "@abi-software/svg-sprite": "^0.1.14",
     "core-js": "^3.3.2",
     "css-element-queries": "^1.2.2",
     "current-script-polyfill": "^1.0.0",

package/src/App.vue

@@ -83,7 +83,7 @@ export default {
       displayCloseButton: false,
       initial: "Rat",
       helpMode: false,
-      flatmapAPI: "https://mapcore-demo.org/devel/flatmap/v1/"
+      flatmapAPI: "https://mapcore-demo.org/fccb/flatmap/"
     }
   },
   mounted: function() {

package/src/components/FlatmapVuer.vue

@@ -6,7 +6,7 @@
     element-loading-spinner="el-icon-loading"
     element-loading-background="rgba(0, 0, 0, 0.3)"
   >
-    <SvgSpriteColor />
+    <map-svg-sprite-color />
     <div style="height:100%;width:100%;position:relative;overflow-y:none">
       <div style="height:100%;width:100%;" ref="display"></div>
       <el-popover
@@ -37,7 +37,7 @@
           popper-class="flatmap-popper left-popper"
           v-model="hoverVisibilities[0].value"
         >
-          <SvgIcon
+          <map-svg-icon
             icon="zoomIn"
             class="icon-button zoomIn"
             slot="reference"
@@ -54,7 +54,7 @@
           popper-class="flatmap-popper popper-zoomout"
           v-model="hoverVisibilities[1].value"
         >
-          <SvgIcon
+          <map-svg-icon
             icon="zoomOut"
             class="icon-button zoomOut"
             slot="reference"
@@ -71,7 +71,7 @@
           popper-class="flatmap-popper"
           v-model="hoverVisibilities[2].value"
         >
-          <SvgIcon
+          <map-svg-icon
             icon="resetZoom"
             class="icon-button resetView"
             slot="reference"
@@ -197,7 +197,7 @@
         trigger="manual"
         popper-class="flatmap-popper right-popper"
       >
-        <SvgIcon
+        <map-svg-icon
           v-popover:backgroundPopover
           icon="changeBckgd"
           class="icon-button background-colour"
@@ -211,6 +211,7 @@
         ref="tooltip"
         class="tooltip"
         :content="tooltipContent"
+        :flatmapAPI="flatmapAPI"
         @resource-selected="resourceSelected"
       />
     </div>
@@ -221,7 +222,7 @@
 /* eslint-disable no-alert, no-console */
 import Vue from "vue";
 import Tooltip from "./Tooltip";
-import { SvgIcon, SvgSpriteColor } from "@abi-software/svg-sprite";
+import { MapSvgIcon, MapSvgSpriteColor } from "@abi-software/svg-sprite";
 import {
   Checkbox,
   CheckboxGroup,
@@ -253,8 +254,8 @@ const mapResize = map => {
 export default {
   name: "FlatmapVuer",
   components: {
-    SvgIcon,
-    SvgSpriteColor,
+    MapSvgIcon,
+    MapSvgSpriteColor,
     Tooltip
   },
   beforeCreate: function() {
@@ -352,10 +353,8 @@ export default {
           eventType: eventType
         };
         // Disable the nueron pop up for now.
-        /*
         if (feature && feature.type !== "marker")
           this.checkAndCreatePopups(data);
-          */
         this.$emit("resource-selected", data);
       };
     },
@@ -635,7 +634,7 @@ export default {
     },
     warningMessage: {
       type: String,
-      default: "Beta feature - under active development"
+      default: "Beta feature - This map is based on the connectivity of a rat. New connectivity and species specificity will be added as the SPARC program progress."
     },
     /**
      * State containing state of the flatmap.

package/src/components/PubmedViewer.vue

@@ -43,6 +43,13 @@ export default {
       type: String,
       default: ''
     },
+    /**
+     * Specify the endpoint of the flatmap server.
+     */
+    flatmapAPI: {
+      type: String,
+      default: "https://mapcore-demo.org/flatmaps/"
+    }
   },
   watch: {
     'featureId': function (val){
@@ -85,8 +92,9 @@ export default {
     flatmapQuery: function(identifier){
       this.pubmeds = []
       this.loading.response = true
+      let endpoint = this.flatmapAPI + 'knowledge/query/';
       const data = { sql: 'select publication from publications where entity=?', "params": [identifier]};
-      fetch('https://mapcore-demo.org/devel/flatmap/v1/knowledge/query/', {
+      fetch(endpoint, {
         method: 'POST',
         headers: {
           'Content-Type': 'application/json',

package/src/components/Tooltip.vue

@@ -9,7 +9,7 @@
       </div>
       
 
-      <pubmed-viewer v-if="content.featureId" class="block" :featureId="content.featureId" @pubmedSearchUrl="pubmedSearchUrlUpdate"/>
+      <pubmed-viewer v-if="content.featureId" class="block" :flatmapAPI=flatmapAPI :featureId="content.featureId" @pubmedSearchUrl="pubmedSearchUrlUpdate"/>
       <div v-if="content.components" class="block">
         <div class="attribute-title">Components</div>
         <span class="attribute-content">{{content.components}}</span>
@@ -71,6 +71,13 @@ export default {
     content: {
       type: Object,
       default: undefined
+    },
+        /**
+     * Specify the endpoint of the flatmap server.
+     */
+    flatmapAPI: {
+      type: String,
+      default: "https://mapcore-demo.org/flatmaps/"
     }
   },
   data: function() {