@abi-software/flatmap-viewer 2.3.0-b.2 → 2.3.1-b.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.rst +1 -1
- package/package.json +1 -1
- package/src/annotation.js +123 -8
- package/src/flatmap-viewer.js +0 -14
- package/src/interactions.js +51 -85
- package/src/pathways.js +2 -2
- package/src/styling.js +10 -6
- package/src/systems.js +7 -1
- package/static/css/flatmap-viewer.css +12 -0
- package/src/controls/newcontrols.js +0 -617
- package/src/editor.js +0 -198
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/******************************************************************************
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Flatmap viewer and annotation tool
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Copyright (c) 2019 David Brooks
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Licensed under the Apache License, Version 2.0 (the "License");
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you may not use this file except in compliance with the License.
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You may obtain a copy of the License at
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http://www.apache.org/licenses/LICENSE-2.0
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Unless required by applicable law or agreed to in writing, software
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distributed under the License is distributed on an "AS IS" BASIS,
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WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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See the License for the specific language governing permissions and
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limitations under the License.
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******************************************************************************/
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'use strict';
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//==============================================================================
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// Needed for Webpack ??
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//import zoomInButton from '../static/images/zoom-in-button.png'
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//==============================================================================
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// Make sure colour string is in `#rrggbb` form.
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// Based on https://stackoverflow.com/a/47355187
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function standardise_color(str){
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const canvas = document.createElement("canvas");
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const ctx = canvas.getContext("2d");
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ctx.fillStyle = str;
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const colour = ctx.fillStyle;
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canvas.remove()
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return colour;
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}
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//==============================================================================
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export class NavigationControl
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{
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constructor(flatmap)
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{
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this._flatmap = flatmap;
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this._map = undefined;
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}
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getDefaultPosition()
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//==================
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{
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return 'top-right';
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}
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onAdd(map)
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//========
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{
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this._map = map;
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this._container = document.createElement('div');
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this._container.className = 'maplibregl-ctrl navigation-group';
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this._container.innerHTML = `<button id="flatmap-zoom-in" class="navigation-zoom-in" type="button" title="Zoom in" aria-label="Zoom in"></button>
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<button id="flatmap-zoom-out" class="navigation-zoom-out" type="button" title="Zoom out" aria-label="Zoom out"></button>
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<button id="flatmap-reset" class="navigation-reset" type="button" title="Reset" aria-label="Reset"></button>`;
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this._container.onclick = this.onClick_.bind(this);
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return this._container;
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}
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onRemove()
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//========
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{
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this._container.parentNode.removeChild(this._container);
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this._map = undefined;
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}
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onClick_(e)
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//=========
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{
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if (e.target.id === 'flatmap-zoom-in') {
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this._flatmap.zoomIn();
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} else if (e.target.id === 'flatmap-zoom-out') {
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this._flatmap.zoomOut();
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} else if (e.target.id === 'flatmap-reset') {
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this._flatmap.resetMap();
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}
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}
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}
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//==============================================================================
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export class PathControl
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{
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constructor(flatmap, pathTypes)
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{
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this._flatmap = flatmap;
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this._map = undefined;
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this.__pathTypes = pathTypes;
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}
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getDefaultPosition()
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//==================
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{
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return 'top-right';
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}
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onAdd(map)
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//========
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{
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this._map = map;
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this._container = document.createElement('div');
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this._container.className = 'maplibregl-ctrl';
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this._container.id = 'flatmap-nerve-key';
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this._legend = document.createElement('div');
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this._legend.id = 'nerve-key-text';
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this._legend.className = 'flatmap-nerve-grid';
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const innerHTML = [];
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innerHTML.push(`<label for="path-all-paths">ALL PATHS:</label><div class="nerve-line"></div><input id="path-all-paths" type="checkbox" checked/>`);
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for (const path of this.__pathTypes) {
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// need to set style background instead of class...
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// background: #2A62F6;
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// background: repeating-linear-gradient(to right,#EA3423 0,#EA3423 6px,transparent 6px,transparent 9px)
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innerHTML.push(`<label for="path-${path.type}">${path.label}</label><div class="nerve-line nerve-${path.type}"></div><input id="path-${path.type}" type="checkbox" checked/>`);
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}
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this._legend.innerHTML = innerHTML.join('\n');
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this.__checkedCount = this.__pathTypes.length;
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this.__halfCount = Math.trunc(this.__checkedCount/2);
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this._button = document.createElement('button');
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this._button.id = 'nerve-key-button';
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this._button.className = 'control-button text-button';
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this._button.setAttribute('type', 'button');
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this._button.setAttribute('aria-label', 'Nerve paths legend');
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this._button.setAttribute('control-visible', 'false');
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this._button.textContent = 'PATHS';
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this._button.title = 'Show/hide neuron paths';
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this._container.appendChild(this._button);
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this._container.addEventListener('click', this.onClick_.bind(this));
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return this._container;
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}
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onRemove()
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//========
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{
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this._container.parentNode.removeChild(this._container);
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this._map = undefined;
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}
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onClick_(event)
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//=============
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{
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if (event.target.id === 'nerve-key-button') {
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if (this._button.getAttribute('control-visible') === 'false') {
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this._container.appendChild(this._legend);
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this._button.setAttribute('control-visible', 'true');
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this._legend.focus();
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} else {
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this._legend = this._container.removeChild(this._legend);
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this._button.setAttribute('control-visible', 'false');
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}
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} else if (event.target.tagName === 'INPUT') {
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if (event.target.id === 'path-all-paths') {
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if (event.target.indeterminate) {
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event.target.checked = (this.__checkedCount >= this.__halfCount);
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event.target.indeterminate = false;
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}
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if (event.target.checked) {
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this.__checkedCount = this.__pathTypes.length;
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} else {
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this.__checkedCount = 0;
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}
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for (const path of this.__pathTypes) {
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const pathCheckbox = document.getElementById(`path-${path.type}`);
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if (pathCheckbox) {
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pathCheckbox.checked = event.target.checked;
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this._flatmap.enablePath(path.type, event.target.checked);
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}
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}
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} else if (event.target.id.startsWith('path-')) {
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const pathType = event.target.id.substring(5);
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this._flatmap.enablePath(pathType, event.target.checked);
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if (event.target.checked) {
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this.__checkedCount += 1;
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} else {
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this.__checkedCount -= 1;
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}
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const allPathsCheckbox = document.getElementById('path-all-paths');
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if (this.__checkedCount === 0) {
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allPathsCheckbox.checked = false;
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allPathsCheckbox.indeterminate = false;
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} else if (this.__checkedCount === this.__pathTypes.length) {
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allPathsCheckbox.checked = true;
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allPathsCheckbox.indeterminate = false;
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} else {
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allPathsCheckbox.indeterminate = true;
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}
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}
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}
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event.stopPropagation();
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}
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}
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//==============================================================================
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export class LayerControl
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{
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constructor(flatmap, layerManager)
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{
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this.__flatmap = flatmap;
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this.__manager = layerManager;
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this.__map = undefined;
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}
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getDefaultPosition()
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//==================
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{
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return 'top-right';
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}
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onAdd(map)
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//========
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{
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this.__map = map;
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this.__container = document.createElement('div');
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this.__container.className = 'maplibregl-ctrl';
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this.__container.id = 'flatmap-layer-control';
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this.__layers = document.createElement('div');
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this.__layers.id = 'layer-control-text';
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this.__layers.className = 'flatmap-layer-grid';
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const innerHTML = [];
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innerHTML.push(`<label for="layer-all-layers">ALL LAYERS:</label><input id="layer-all-layers" type="checkbox" checked/>`);
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for (const layer of this.__manager.layers) {
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innerHTML.push(`<label for="layer-${layer.id}">${layer.description}</label><input id="layer-${layer.id}" type="checkbox" checked/>`);
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}
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this.__layers.innerHTML = innerHTML.join('\n');
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this.__layersCount = this.__manager.layers.length;
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this.__checkedCount = this.__layersCount;
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this.__halfCount = Math.trunc(this.__checkedCount/2);
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this.__button = document.createElement('button');
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this.__button.id = 'map-layers-button';
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this.__button.className = 'control-button text-button';
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this.__button.setAttribute('type', 'button');
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this.__button.setAttribute('aria-label', 'Show/hide map layers');
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this.__button.setAttribute('control-visible', 'false');
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this.__button.textContent = 'LAYERS';
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this.__button.title = 'Show/hide map layers';
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this.__container.appendChild(this.__button);
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this.__container.addEventListener('click', this.onClick_.bind(this));
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return this.__container;
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}
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onRemove()
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//========
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{
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this.__container.parentNode.removeChild(this.__container);
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this.__map = undefined;
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}
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onClick_(event)
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//=============
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{
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if (event.target.id === 'map-layers-button') {
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if (this.__button.getAttribute('control-visible') === 'false') {
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this.__container.appendChild(this.__layers);
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this.__button.setAttribute('control-visible', 'true');
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this.__layers.focus();
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} else {
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this.__layers = this.__container.removeChild(this.__layers);
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this.__button.setAttribute('control-visible', 'false');
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}
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} else if (event.target.tagName === 'INPUT') {
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if (event.target.id === 'layer-all-layers') {
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if (event.target.indeterminate) {
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event.target.checked = (this.__checkedCount >= this.__halfCount);
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event.target.indeterminate = false;
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}
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if (event.target.checked) {
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this.__checkedCount = this.__layersCount;
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} else {
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this.__checkedCount = 0;
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}
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for (const layer of this.__manager.layers) {
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const layerCheckbox = document.getElementById(`layer-${layer.id}`);
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if (layerCheckbox) {
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layerCheckbox.checked = event.target.checked;
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this.__manager.activate(layer.id, event.target.checked);
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}
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}
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} else if (event.target.id.startsWith('layer-')) {
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const layerId = event.target.id.substring(6);
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this.__manager.activate(layerId, event.target.checked);
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if (event.target.checked) {
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this.__checkedCount += 1;
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} else {
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this.__checkedCount -= 1;
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}
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const allLayersCheckbox = document.getElementById('layer-all-layers');
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if (this.__checkedCount === 0) {
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allLayersCheckbox.checked = false;
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allLayersCheckbox.indeterminate = false;
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} else if (this.__checkedCount === this.__layersCount) {
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allLayersCheckbox.checked = true;
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allLayersCheckbox.indeterminate = false;
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} else {
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allLayersCheckbox.indeterminate = true;
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}
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}
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}
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event.stopPropagation();
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}
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}
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//==============================================================================
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325
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const SCKAN_STATES = [
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{
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327
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'id': 'VALID',
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328
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'description': 'Path consistent with SCKAN'
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329
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},
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{
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'id': 'INVALID',
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'description': 'Path inconsistent with SCKAN'
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333
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}
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334
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-
];
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335
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336
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337
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-
export class SCKANControl
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338
|
-
{
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339
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-
constructor(flatmap)
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340
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{
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341
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this.__flatmap = flatmap;
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342
|
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this.__map = undefined;
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343
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}
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344
|
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getDefaultPosition()
|
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346
|
-
//==================
|
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347
|
-
{
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348
|
-
return 'top-right';
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349
|
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}
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350
|
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351
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-
onAdd(map)
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352
|
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//========
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353
|
-
{
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354
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this.__map = map;
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355
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this.__container = document.createElement('div');
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356
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this.__container.className = 'maplibregl-ctrl';
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357
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this.__container.id = 'flatmap-layer-control';
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358
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359
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this.__sckan = document.createElement('div');
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this.__sckan.id = 'sckan-control-text';
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361
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this.__sckan.className = 'flatmap-layer-grid';
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362
|
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363
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const innerHTML = [];
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364
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innerHTML.push(`<label for="sckan-all-paths">ALL PATHS:</label><input id="sckan-all-paths" type="checkbox" checked/>`);
|
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365
|
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for (const state of SCKAN_STATES) {
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366
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innerHTML.push(`<label for="sckan-${state.id}">${state.description}</label><input id="sckan-${state.id}" type="checkbox" checked/>`);
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367
|
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}
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368
|
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this.__sckan.innerHTML = innerHTML.join('\n');
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369
|
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this.__sckanCount = SCKAN_STATES.length;
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371
|
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this.__checkedCount = this.__sckanCount;
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372
|
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this.__halfCount = Math.trunc(this.__checkedCount/2);
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373
|
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374
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this.__button = document.createElement('button');
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375
|
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this.__button.id = 'map-sckan-button';
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376
|
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this.__button.className = 'control-button text-button';
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377
|
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this.__button.setAttribute('type', 'button');
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378
|
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this.__button.setAttribute('aria-label', 'Show/hide valid SCKAN paths');
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379
|
-
this.__button.setAttribute('control-visible', 'false');
|
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380
|
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this.__button.textContent = 'SCKAN';
|
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381
|
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this.__button.title = 'Show/hide valid SCKAN paths';
|
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382
|
-
this.__container.appendChild(this.__button);
|
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383
|
-
|
|
384
|
-
this.__container.addEventListener('click', this.onClick_.bind(this));
|
|
385
|
-
return this.__container;
|
|
386
|
-
}
|
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387
|
-
|
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388
|
-
onRemove()
|
|
389
|
-
//========
|
|
390
|
-
{
|
|
391
|
-
this.__container.parentNode.removeChild(this.__container);
|
|
392
|
-
this.__map = undefined;
|
|
393
|
-
}
|
|
394
|
-
|
|
395
|
-
onClick_(event)
|
|
396
|
-
//=============
|
|
397
|
-
{
|
|
398
|
-
if (event.target.id === 'map-sckan-button') {
|
|
399
|
-
if (this.__button.getAttribute('control-visible') === 'false') {
|
|
400
|
-
this.__container.appendChild(this.__sckan);
|
|
401
|
-
this.__button.setAttribute('control-visible', 'true');
|
|
402
|
-
this.__sckan.focus();
|
|
403
|
-
} else {
|
|
404
|
-
this.__sckan = this.__container.removeChild(this.__sckan);
|
|
405
|
-
this.__button.setAttribute('control-visible', 'false');
|
|
406
|
-
}
|
|
407
|
-
} else if (event.target.tagName === 'INPUT') {
|
|
408
|
-
if (event.target.id === 'sckan-all-paths') {
|
|
409
|
-
if (event.target.indeterminate) {
|
|
410
|
-
event.target.checked = (this.__checkedCount >= this.__halfCount);
|
|
411
|
-
event.target.indeterminate = false;
|
|
412
|
-
}
|
|
413
|
-
if (event.target.checked) {
|
|
414
|
-
this.__checkedCount = this.__sckanCount;
|
|
415
|
-
} else {
|
|
416
|
-
this.__checkedCount = 0;
|
|
417
|
-
}
|
|
418
|
-
for (const state of SCKAN_STATES) {
|
|
419
|
-
const sckanCheckbox = document.getElementById(`sckan-${state.id}`);
|
|
420
|
-
if (sckanCheckbox) {
|
|
421
|
-
sckanCheckbox.checked = event.target.checked;
|
|
422
|
-
this.__flatmap.showSckanPaths(state.id, event.target.checked);
|
|
423
|
-
}
|
|
424
|
-
}
|
|
425
|
-
} else if (event.target.id.startsWith('sckan-')) {
|
|
426
|
-
const sckanId = event.target.id.substring(6);
|
|
427
|
-
this.__flatmap.showSckanPaths(sckanId, event.target.checked);
|
|
428
|
-
if (event.target.checked) {
|
|
429
|
-
this.__checkedCount += 1;
|
|
430
|
-
} else {
|
|
431
|
-
this.__checkedCount -= 1;
|
|
432
|
-
}
|
|
433
|
-
const allLayersCheckbox = document.getElementById('sckan-all-paths');
|
|
434
|
-
if (this.__checkedCount === 0) {
|
|
435
|
-
allLayersCheckbox.checked = false;
|
|
436
|
-
allLayersCheckbox.indeterminate = false;
|
|
437
|
-
} else if (this.__checkedCount === this.__sckanCount) {
|
|
438
|
-
allLayersCheckbox.checked = true;
|
|
439
|
-
allLayersCheckbox.indeterminate = false;
|
|
440
|
-
} else {
|
|
441
|
-
allLayersCheckbox.indeterminate = true;
|
|
442
|
-
}
|
|
443
|
-
}
|
|
444
|
-
}
|
|
445
|
-
event.stopPropagation();
|
|
446
|
-
}
|
|
447
|
-
}
|
|
448
|
-
|
|
449
|
-
|
|
450
|
-
|
|
451
|
-
|
|
452
|
-
class StateControl
|
|
453
|
-
{
|
|
454
|
-
constructor(id, flatmap, states, controlFunction)
|
|
455
|
-
{
|
|
456
|
-
this.__id = id;
|
|
457
|
-
this.__flatmap = flatmap;
|
|
458
|
-
this.__states = states;
|
|
459
|
-
this.__controlFunction = controlFunction;
|
|
460
|
-
this.__map = undefined;
|
|
461
|
-
}
|
|
462
|
-
|
|
463
|
-
getDefaultPosition()
|
|
464
|
-
//==================
|
|
465
|
-
{
|
|
466
|
-
return 'top-right';
|
|
467
|
-
}
|
|
468
|
-
|
|
469
|
-
onAdd(map)
|
|
470
|
-
//========
|
|
471
|
-
{
|
|
472
|
-
this.__map = map;
|
|
473
|
-
this.__container = document.createElement('div');
|
|
474
|
-
this.__container.className = 'maplibregl-ctrl';
|
|
475
|
-
this.__container.id = 'flatmap-state-control';
|
|
476
|
-
|
|
477
|
-
this.__control = document.createElement('div');
|
|
478
|
-
this.__control.id = `${this.__id}-control-text`;
|
|
479
|
-
this.__control.className = 'flatmap-state-grid';
|
|
480
|
-
|
|
481
|
-
const innerHTML = [];
|
|
482
|
-
innerHTML.push(`<label for="sckan-all-paths">ALL PATHS:</label><input id="sckan-all-paths" type="checkbox" checked/>`);
|
|
483
|
-
for (const state of SCKAN_STATES) {
|
|
484
|
-
innerHTML.push(`<label for="sckan-${state.id}">${state.description}</label><input id="sckan-${state.id}" type="checkbox" checked/>`);
|
|
485
|
-
}
|
|
486
|
-
this.__sckan.innerHTML = innerHTML.join('\n');
|
|
487
|
-
|
|
488
|
-
this.__sckanCount = SCKAN_STATES.length;
|
|
489
|
-
this.__checkedCount = this.__sckanCount;
|
|
490
|
-
this.__halfCount = Math.trunc(this.__checkedCount/2);
|
|
491
|
-
|
|
492
|
-
this.__button = document.createElement('button');
|
|
493
|
-
this.__button.id = 'map-sckan-button';
|
|
494
|
-
this.__button.className = 'control-button text-button';
|
|
495
|
-
this.__button.setAttribute('type', 'button');
|
|
496
|
-
this.__button.setAttribute('aria-label', 'Show/hide valid SCKAN paths');
|
|
497
|
-
this.__button.setAttribute('control-visible', 'false');
|
|
498
|
-
this.__button.textContent = 'SCKAN';
|
|
499
|
-
this.__button.title = 'Show/hide valid SCKAN paths';
|
|
500
|
-
this.__container.appendChild(this.__button);
|
|
501
|
-
|
|
502
|
-
this.__container.addEventListener('click', this.onClick_.bind(this));
|
|
503
|
-
return this.__container;
|
|
504
|
-
}
|
|
505
|
-
|
|
506
|
-
onRemove()
|
|
507
|
-
//========
|
|
508
|
-
{
|
|
509
|
-
this.__container.parentNode.removeChild(this.__container);
|
|
510
|
-
this.__map = undefined;
|
|
511
|
-
}
|
|
512
|
-
|
|
513
|
-
onClick_(event)
|
|
514
|
-
//=============
|
|
515
|
-
{
|
|
516
|
-
if (event.target.id === 'map-sckan-button') {
|
|
517
|
-
if (this.__button.getAttribute('control-visible') === 'false') {
|
|
518
|
-
this.__container.appendChild(this.__sckan);
|
|
519
|
-
this.__button.setAttribute('control-visible', 'true');
|
|
520
|
-
this.__sckan.focus();
|
|
521
|
-
} else {
|
|
522
|
-
this.__sckan = this.__container.removeChild(this.__sckan);
|
|
523
|
-
this.__button.setAttribute('control-visible', 'false');
|
|
524
|
-
}
|
|
525
|
-
} else if (event.target.tagName === 'INPUT') {
|
|
526
|
-
if (event.target.id === 'sckan-all-paths') {
|
|
527
|
-
if (event.target.indeterminate) {
|
|
528
|
-
event.target.checked = (this.__checkedCount >= this.__halfCount);
|
|
529
|
-
event.target.indeterminate = false;
|
|
530
|
-
}
|
|
531
|
-
if (event.target.checked) {
|
|
532
|
-
this.__checkedCount = this.__sckanCount;
|
|
533
|
-
} else {
|
|
534
|
-
this.__checkedCount = 0;
|
|
535
|
-
}
|
|
536
|
-
for (const state of SCKAN_STATES) {
|
|
537
|
-
const sckanCheckbox = document.getElementById(`sckan-${state.id}`);
|
|
538
|
-
if (sckanCheckbox) {
|
|
539
|
-
sckanCheckbox.checked = event.target.checked;
|
|
540
|
-
this.__flatmap.showSckanPaths(state.id, event.target.checked);
|
|
541
|
-
}
|
|
542
|
-
}
|
|
543
|
-
} else if (event.target.id.startsWith('sckan-')) {
|
|
544
|
-
const sckanId = event.target.id.substring(6);
|
|
545
|
-
this.__flatmap.showSckanPaths(sckanId, event.target.checked);
|
|
546
|
-
if (event.target.checked) {
|
|
547
|
-
this.__checkedCount += 1;
|
|
548
|
-
} else {
|
|
549
|
-
this.__checkedCount -= 1;
|
|
550
|
-
}
|
|
551
|
-
const allLayersCheckbox = document.getElementById('sckan-all-paths');
|
|
552
|
-
if (this.__checkedCount === 0) {
|
|
553
|
-
allLayersCheckbox.checked = false;
|
|
554
|
-
allLayersCheckbox.indeterminate = false;
|
|
555
|
-
} else if (this.__checkedCount === this.__sckanCount) {
|
|
556
|
-
allLayersCheckbox.checked = true;
|
|
557
|
-
allLayersCheckbox.indeterminate = false;
|
|
558
|
-
} else {
|
|
559
|
-
allLayersCheckbox.indeterminate = true;
|
|
560
|
-
}
|
|
561
|
-
}
|
|
562
|
-
}
|
|
563
|
-
event.stopPropagation();
|
|
564
|
-
}
|
|
565
|
-
}
|
|
566
|
-
|
|
567
|
-
//==============================================================================
|
|
568
|
-
|
|
569
|
-
export class BackgroundControl
|
|
570
|
-
{
|
|
571
|
-
constructor(flatmap)
|
|
572
|
-
{
|
|
573
|
-
this.__flatmap = flatmap;
|
|
574
|
-
this.__map = undefined;
|
|
575
|
-
}
|
|
576
|
-
|
|
577
|
-
getDefaultPosition()
|
|
578
|
-
//==================
|
|
579
|
-
{
|
|
580
|
-
return 'bottom-right';
|
|
581
|
-
}
|
|
582
|
-
|
|
583
|
-
onAdd(map)
|
|
584
|
-
//========
|
|
585
|
-
{
|
|
586
|
-
this.__map = map;
|
|
587
|
-
this.__container = document.createElement('div');
|
|
588
|
-
this.__container.className = 'maplibregl-ctrl';
|
|
589
|
-
this.__colourDiv = document.createElement('div');
|
|
590
|
-
this.__colourDiv.setAttribute('aria-label', 'Change background colour');
|
|
591
|
-
this.__colourDiv.title = 'Change background colour';
|
|
592
|
-
const background = standardise_color(this.__flatmap.getBackgroundColour());
|
|
593
|
-
this.__colourDiv.innerHTML = `<input type="color" id="colourPicker" value="${background}">`;
|
|
594
|
-
this.__container.appendChild(this.__colourDiv);
|
|
595
|
-
this.__colourDiv.addEventListener('input', this.__updateColour.bind(this), false);
|
|
596
|
-
this.__colourDiv.addEventListener('change', this.__updateColour.bind(this), false);
|
|
597
|
-
return this.__container;
|
|
598
|
-
}
|
|
599
|
-
|
|
600
|
-
onRemove()
|
|
601
|
-
//========
|
|
602
|
-
{
|
|
603
|
-
this.__container.parentNode.removeChild(this.__container);
|
|
604
|
-
this.__map = undefined;
|
|
605
|
-
}
|
|
606
|
-
|
|
607
|
-
__updateColour(event)
|
|
608
|
-
//===================
|
|
609
|
-
{
|
|
610
|
-
const colour = event.target.value;
|
|
611
|
-
this.__flatmap.setBackgroundColour(colour);
|
|
612
|
-
this.__flatmap.controlEvent('change', 'background', colour)
|
|
613
|
-
event.stopPropagation();
|
|
614
|
-
}
|
|
615
|
-
}
|
|
616
|
-
|
|
617
|
-
//==============================================================================
|