@abhishekmcp/notes 0.1.1 → 0.3.0

package/dist/store.js

@@ -0,0 +1,410 @@
+/**
+ * The notes store: an in-memory MiniSearch full-text index + a wiki-link/tag
+ * graph (derived from per-note metadata), persisted to a JSON cache for fast
+ * warm starts with incremental mtime/size sync. Files on disk are the source of
+ * truth; this module keeps the index, the graph metadata, and the cache in sync
+ * across every mutation. All mutating ops are refused when NOTES_READONLY=1.
+ */
+import { promises as fs } from "node:fs";
+import MiniSearch from "minisearch";
+import { INDEX_VERSION, cacheDisabled, getIndexPath, getNotesDir, isReadOnly, } from "./config.js";
+import { atomicWrite, listNoteFiles, readRaw, resolveSafe, validateName, } from "./fsutil.js";
+import { extractSection, extractTodos, normalizeLinkTarget, parseNote, } from "./parse.js";
+/** One fixed options object — reused for `new MiniSearch` and `loadJSON`. */
+const MINI_OPTS = {
+    idField: "name",
+    fields: ["title", "body", "tags"],
+    storeFields: ["name", "title", "tags"],
+};
+let mini = new MiniSearch(MINI_OPTS);
+const perNote = new Map();
+// --- Index construction ---------------------------------------------------
+/** Read + parse a note file into a search doc and its metadata. */
+async function buildEntry(name, fullPath, mtimeMs, size) {
+    const raw = await readRaw(fullPath);
+    const parsed = parseNote(raw);
+    const title = parsed.title ?? name;
+    const meta = { mtimeMs, size, title, tags: parsed.tags, outLinks: parsed.links };
+    const doc = { name, title, body: parsed.body, tags: parsed.tags.join(" ") };
+    return { doc, meta };
+}
+/** Add or replace a single note in the in-memory index + metadata map. */
+async function indexNote(name, fullPath, mtimeMs, size) {
+    const { doc, meta } = await buildEntry(name, fullPath, mtimeMs, size);
+    if (perNote.has(name))
+        mini.discard(name);
+    mini.add(doc);
+    perNote.set(name, meta);
+}
+/** Remove a note from the in-memory index + metadata map. */
+function unindexNote(name) {
+    if (perNote.has(name)) {
+        mini.discard(name);
+        perNote.delete(name);
+    }
+}
+/** Build the index from scratch by walking the notes dir. */
+async function fullRebuild() {
+    mini = new MiniSearch(MINI_OPTS);
+    perNote.clear();
+    const files = await listNoteFiles();
+    for (const f of files) {
+        try {
+            await indexNote(f.name, f.fullPath, f.mtimeMs, f.size);
+        }
+        catch (err) {
+            console.error(`Skipping unindexable note "${f.name}": ${err.message}`);
+        }
+    }
+}
+/** Persist the index + metadata to the on-disk cache (best-effort). */
+async function writeCache() {
+    if (cacheDisabled())
+        return;
+    const cache = {
+        version: INDEX_VERSION,
+        perNote: Object.fromEntries(perNote),
+        minisearch: JSON.parse(JSON.stringify(mini)),
+    };
+    try {
+        await atomicWrite(getIndexPath(), JSON.stringify(cache));
+    }
+    catch (err) {
+        console.error(`Could not write index cache: ${err.message}`);
+    }
+}
+/**
+ * Load the index. Tries the cache and incrementally syncs against disk
+ * (re-parsing only new/changed files, dropping deleted ones). Falls back to a
+ * full rebuild if the cache is missing, unreadable, or the version changed.
+ * Call once on startup before serving requests.
+ */
+export async function buildIndex() {
+    if (cacheDisabled()) {
+        await fullRebuild();
+        return;
+    }
+    let loaded = false;
+    try {
+        const raw = await fs.readFile(getIndexPath(), "utf8");
+        const cache = JSON.parse(raw);
+        if (cache.version === INDEX_VERSION && cache.minisearch) {
+            mini = MiniSearch.loadJSON(JSON.stringify(cache.minisearch), MINI_OPTS);
+            perNote.clear();
+            for (const [name, meta] of Object.entries(cache.perNote ?? {}))
+                perNote.set(name, meta);
+            loaded = true;
+        }
+    }
+    catch (err) {
+        if (err.code !== "ENOENT") {
+            console.error(`Index cache unreadable, rebuilding: ${err.message}`);
+        }
+    }
+    if (!loaded) {
+        await fullRebuild();
+        await writeCache();
+        return;
+    }
+    // Incremental sync against the current files on disk.
+    let changed = false;
+    const files = await listNoteFiles();
+    const onDisk = new Set();
+    for (const f of files) {
+        onDisk.add(f.name);
+        const prev = perNote.get(f.name);
+        if (!prev || prev.mtimeMs !== f.mtimeMs || prev.size !== f.size) {
+            try {
+                await indexNote(f.name, f.fullPath, f.mtimeMs, f.size);
+                changed = true;
+            }
+            catch (err) {
+                console.error(`Skipping unindexable note "${f.name}": ${err.message}`);
+            }
+        }
+    }
+    for (const name of [...perNote.keys()]) {
+        if (!onDisk.has(name)) {
+            unindexNote(name);
+            changed = true;
+        }
+    }
+    if (changed)
+        await writeCache();
+}
+// --- Graph accessors (used by graph.ts) -----------------------------------
+export function getAllMeta() {
+    return perNote;
+}
+export function getMeta(name) {
+    return perNote.get(normalizeLinkTarget(name));
+}
+export function noteExists(name) {
+    return perNote.has(normalizeLinkTarget(name));
+}
+/** List notes (newest first), optionally filtered by tag, with pagination. */
+export function listNotes(offset = 0, limit = 50, tag) {
+    let entries = [...perNote.entries()];
+    if (tag) {
+        const want = tag.toLowerCase().replace(/^#/, "");
+        entries = entries.filter(([, m]) => m.tags.some((t) => t.toLowerCase() === want));
+    }
+    entries.sort((a, b) => b[1].mtimeMs - a[1].mtimeMs);
+    const total = entries.length;
+    const page = entries.slice(offset, offset + limit);
+    return {
+        items: page.map(([name, m]) => ({
+            name,
+            title: m.title,
+            size: m.size,
+            mtimeMs: m.mtimeMs,
+            tags: m.tags,
+        })),
+        total,
+        hasMore: offset + limit < total,
+    };
+}
+/**
+ * Read a note's content. With `section`, returns just that heading's block.
+ * With `offset`/`limit` (character window), returns a slice + a `truncated` flag.
+ */
+export async function readNote(name, opts = {}) {
+    const abs = await resolveSafe(name);
+    const raw = await readRaw(abs);
+    let text = raw;
+    if (opts.section) {
+        const { body } = parseNote(raw);
+        const section = extractSection(body, opts.section);
+        if (section === null)
+            return { text: `Section "${opts.section}" not found in "${name}".`, truncated: false };
+        text = section;
+    }
+    if (opts.offset !== undefined || opts.limit !== undefined) {
+        const start = Math.max(0, opts.offset ?? 0);
+        const end = opts.limit !== undefined ? start + opts.limit : text.length;
+        const sliced = text.slice(start, end);
+        return { text: sliced, truncated: end < text.length };
+    }
+    return { text, truncated: false };
+}
+/** Heading-tree outline of a note (cheap way to grasp a big note). */
+export async function getOutline(name) {
+    const abs = await resolveSafe(name);
+    const raw = await readRaw(abs);
+    const { headings } = parseNote(raw);
+    if (headings.length === 0)
+        return `"${name}" has no headings.`;
+    return headings.map((h) => `${"  ".repeat(h.level - 1)}- ${h.text}`).join("\n");
+}
+// --- Mutations ------------------------------------------------------------
+function assertWritable() {
+    if (isReadOnly())
+        throw new Error("Server is read-only (NOTES_READONLY=1); mutations are disabled.");
+}
+/** Re-stat a file and (re)index it, then persist the cache. */
+async function syncFromDisk(name) {
+    const abs = await resolveSafe(name);
+    const stat = await fs.stat(abs);
+    await indexNote(normalizeLinkTarget(name), abs, stat.mtimeMs, stat.size);
+}
+export async function createNote(name, content, overwrite = false) {
+    assertWritable();
+    const abs = await resolveSafe(name);
+    if (!overwrite) {
+        try {
+            await fs.access(abs);
+            throw new Error(`Note "${name}" already exists. Use overwrite, or append_note.`);
+        }
+        catch (err) {
+            if (err.code !== "ENOENT")
+                throw err;
+        }
+    }
+    await atomicWrite(abs, content);
+    await syncFromDisk(name);
+    await writeCache();
+    return normalizeLinkTarget(name);
+}
+export async function appendNote(name, content) {
+    assertWritable();
+    const abs = await resolveSafe(name);
+    let existing = "";
+    try {
+        existing = await readRaw(abs);
+    }
+    catch (err) {
+        if (err.code !== "ENOENT")
+            throw err;
+    }
+    const sep = existing && !existing.endsWith("\n") ? "\n\n" : existing ? "\n" : "";
+    await atomicWrite(abs, existing + sep + content);
+    await syncFromDisk(name);
+    await writeCache();
+    return normalizeLinkTarget(name);
+}
+export async function deleteNote(name) {
+    assertWritable();
+    const abs = await resolveSafe(name);
+    await fs.unlink(abs);
+    unindexNote(normalizeLinkTarget(name));
+    await writeCache();
+}
+/** Replace wiki-links in `text` that point at `from` with `to` (alias preserved). */
+function rewriteLinks(text, from, to) {
+    const fromNorm = normalizeLinkTarget(from);
+    return text.replace(/\[\[([^\]]+)\]\]/g, (whole, inner) => {
+        const [target, ...aliasParts] = inner.split("|");
+        if (normalizeLinkTarget(target) !== fromNorm)
+            return whole;
+        const alias = aliasParts.length ? `|${aliasParts.join("|")}` : "";
+        return `[[${to}${alias}]]`;
+    });
+}
+/**
+ * Move/rename a note and rewrite every `[[from]]` wiki-link across the vault to
+ * `[[to]]`. Keeps the index, graph and cache consistent.
+ */
+export async function moveNote(from, to) {
+    assertWritable();
+    const fromNorm = normalizeLinkTarget(from);
+    const toNorm = normalizeLinkTarget(to);
+    const fromAbs = await resolveSafe(from);
+    const toAbs = await resolveSafe(to);
+    // Move the file (refuse to clobber an existing target).
+    try {
+        await fs.access(toAbs);
+        throw new Error(`Target note "${to}" already exists.`);
+    }
+    catch (err) {
+        if (err.code !== "ENOENT")
+            throw err;
+    }
+    const content = await readRaw(fromAbs);
+    await atomicWrite(toAbs, content);
+    await fs.unlink(fromAbs);
+    unindexNote(fromNorm);
+    await syncFromDisk(toNorm);
+    // Rewrite backlinks in every note that linked to `from`.
+    const rewritten = [];
+    for (const [name, meta] of [...perNote.entries()]) {
+        if (name === toNorm)
+            continue;
+        if (!meta.outLinks.some((l) => normalizeLinkTarget(l) === fromNorm))
+            continue;
+        const abs = await resolveSafe(name);
+        const text = await readRaw(abs);
+        const updated = rewriteLinks(text, fromNorm, toNorm);
+        if (updated !== text) {
+            await atomicWrite(abs, updated);
+            await syncFromDisk(name);
+            rewritten.push(name);
+        }
+    }
+    await writeCache();
+    return { from: fromNorm, to: toNorm, rewritten };
+}
+const FIELD_MAP = { title: "title", tag: "tags", tags: "tags", body: "body" };
+/** Build a ±context snippet around the first query-term hit in the body. */
+function makeSnippet(body, terms, width = 160) {
+    const flat = body.replace(/\s+/g, " ").trim();
+    if (!flat)
+        return "";
+    const lower = flat.toLowerCase();
+    let pos = -1;
+    for (const t of terms) {
+        const i = lower.indexOf(t);
+        if (i !== -1 && (pos === -1 || i < pos))
+            pos = i;
+    }
+    if (pos === -1)
+        return flat.slice(0, width) + (flat.length > width ? "…" : "");
+    const half = Math.floor(width / 2);
+    const start = Math.max(0, pos - half);
+    const end = Math.min(flat.length, pos + half);
+    return (start > 0 ? "…" : "") + flat.slice(start, end).trim() + (end < flat.length ? "…" : "");
+}
+/**
+ * Ranked full-text search. Supports `fuzzy`, `prefix`, a `field` filter
+ * (title/tag/body, or `path` to match the note name), and pagination. Returns
+ * ranked snippets with surrounding context.
+ */
+export async function searchNotes(query, opts = {}) {
+    const offset = opts.offset ?? 0;
+    const limit = opts.limit ?? 10;
+    const terms = query.toLowerCase().split(/\s+/).filter(Boolean);
+    // `path:` is not an indexed field — filter note names directly.
+    if (opts.field === "path" || opts.field === "name") {
+        const matches = [...perNote.entries()]
+            .filter(([name]) => terms.every((t) => name.toLowerCase().includes(t)))
+            .map(([name, m]) => ({ name, title: m.title, score: 1, snippet: "" }));
+        return { hits: matches.slice(offset, offset + limit), total: matches.length, hasMore: offset + limit < matches.length };
+    }
+    const searchOpts = {
+        prefix: opts.prefix ?? true,
+        fuzzy: opts.fuzzy ? 0.2 : false,
+        boost: { title: 2, tags: 1.5 },
+    };
+    if (opts.field && FIELD_MAP[opts.field])
+        searchOpts.fields = [FIELD_MAP[opts.field]];
+    const results = mini.search(query, searchOpts);
+    const total = results.length;
+    const page = results.slice(offset, offset + limit);
+    const hits = [];
+    for (const r of page) {
+        const name = r.id;
+        let snippet = "";
+        try {
+            const abs = await resolveSafe(name);
+            const { body } = parseNote(await readRaw(abs));
+            snippet = makeSnippet(body, terms);
+        }
+        catch {
+            // Note vanished since indexing — skip snippet.
+        }
+        hits.push({ name, title: r.title ?? name, score: r.score, snippet });
+    }
+    return { hits, total, hasMore: offset + limit < total };
+}
+/** All tags across the vault with note counts (case-insensitive grouping). */
+export function listTags() {
+    const counts = new Map();
+    for (const m of perNote.values()) {
+        for (const t of m.tags) {
+            const key = t.toLowerCase();
+            const cur = counts.get(key);
+            if (cur)
+                cur.count++;
+            else
+                counts.set(key, { display: t, count: 1 });
+        }
+    }
+    return [...counts.values()]
+        .map((c) => ({ tag: c.display, count: c.count }))
+        .sort((a, b) => b.count - a.count || a.tag.localeCompare(b.tag));
+}
+/** Aggregate `- [ ]` / `- [x]` checkboxes across all notes. */
+export async function listTodos(includeDone = false) {
+    const out = [];
+    for (const name of perNote.keys()) {
+        try {
+            const abs = await resolveSafe(name);
+            const { body } = parseNote(await readRaw(abs));
+            for (const t of extractTodos(body)) {
+                if (!includeDone && t.done)
+                    continue;
+                out.push({ note: name, text: t.text, done: t.done, line: t.line });
+            }
+        }
+        catch {
+            // skip unreadable note
+        }
+    }
+    return out;
+}
+/** Notes-dir banner for startup logging. */
+export function notesDir() {
+    return getNotesDir();
+}
+/** Exposed for tests: validate a name without touching disk. */
+export { validateName };
+//# sourceMappingURL=store.js.map

package/dist/store.js.map

@@ -0,0 +1 @@
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package/dist/tokenizer.d.ts

@@ -0,0 +1,30 @@
+/**
+ * Hand-rolled BERT-uncased WordPiece tokenizer — pure JS, no dependencies.
+ * Mirrors google-research/bert `tokenization.py` (BasicTokenizer +
+ * WordpieceTokenizer) closely enough to feed all-MiniLM-L6-v2. We hand-roll it
+ * for the same reason we hand-roll the frontmatter parser: avoid a native /
+ * audit-heavy dependency (@huggingface/tokenizers is a Rust binding).
+ */
+export declare class WordPieceTokenizer {
+    private vocab;
+    readonly unkId: number;
+    readonly clsId: number;
+    readonly sepId: number;
+    readonly padId: number;
+    constructor(vocabText: string);
+    /** Normalize: strip control chars, pad CJK, lowercase, remove accents (NFD/Mn). */
+    private normalize;
+    /** Whitespace + punctuation split into basic tokens (BERT BasicTokenizer). */
+    private basicTokenize;
+    /** Greedy longest-match-first WordPiece split of a single word. */
+    private wordpiece;
+    /**
+     * Encode text into `[CLS] … [SEP]` token ids (truncated to maxLen) plus an
+     * all-ones attention mask. We embed one text at a time (batch 1), so no
+     * padding is needed.
+     */
+    encode(text: string, maxLen?: number): {
+        inputIds: number[];
+        attentionMask: number[];
+    };
+}

package/dist/tokenizer.js

@@ -0,0 +1,140 @@
+/**
+ * Hand-rolled BERT-uncased WordPiece tokenizer — pure JS, no dependencies.
+ * Mirrors google-research/bert `tokenization.py` (BasicTokenizer +
+ * WordpieceTokenizer) closely enough to feed all-MiniLM-L6-v2. We hand-roll it
+ * for the same reason we hand-roll the frontmatter parser: avoid a native /
+ * audit-heavy dependency (@huggingface/tokenizers is a Rust binding).
+ */
+const SPECIAL = { unk: "[UNK]", cls: "[CLS]", sep: "[SEP]", pad: "[PAD]" };
+/** True if a Unicode code point is a CJK character (BERT `_is_chinese_char`). */
+function isCjk(cp) {
+    return ((cp >= 0x4e00 && cp <= 0x9fff) ||
+        (cp >= 0x3400 && cp <= 0x4dbf) ||
+        (cp >= 0x20000 && cp <= 0x2a6df) ||
+        (cp >= 0x2a700 && cp <= 0x2b73f) ||
+        (cp >= 0x2b740 && cp <= 0x2b81f) ||
+        (cp >= 0x2b820 && cp <= 0x2ceaf) ||
+        (cp >= 0xf900 && cp <= 0xfaff) ||
+        (cp >= 0x2f800 && cp <= 0x2fa1f));
+}
+/** BERT `_is_punctuation`: all non-alphanumeric ASCII + any Unicode P* category. */
+function isPunct(ch) {
+    const cp = ch.codePointAt(0);
+    if ((cp >= 33 && cp <= 47) ||
+        (cp >= 58 && cp <= 64) ||
+        (cp >= 91 && cp <= 96) ||
+        (cp >= 123 && cp <= 126)) {
+        return true;
+    }
+    return /\p{P}/u.test(ch);
+}
+export class WordPieceTokenizer {
+    vocab;
+    unkId;
+    clsId;
+    sepId;
+    padId;
+    constructor(vocabText) {
+        this.vocab = new Map();
+        const lines = vocabText.split(/\r?\n/);
+        let i = 0;
+        for (const line of lines) {
+            // vocab.txt is one token per line; the line number is the id. Do not trim
+            // away a token that is itself whitespace-like — but blank trailing lines
+            // (from the split) must not consume ids, so stop at the first empty tail.
+            const tok = line.replace(/\r$/, "");
+            if (tok === "" && i >= lines.length - 2)
+                break;
+            this.vocab.set(tok, i);
+            i++;
+        }
+        this.unkId = this.vocab.get(SPECIAL.unk);
+        this.clsId = this.vocab.get(SPECIAL.cls);
+        this.sepId = this.vocab.get(SPECIAL.sep);
+        this.padId = this.vocab.get(SPECIAL.pad) ?? 0;
+        if (this.unkId === undefined || this.clsId === undefined || this.sepId === undefined) {
+            throw new Error("vocab.txt is missing required special tokens ([UNK]/[CLS]/[SEP]).");
+        }
+    }
+    /** Normalize: strip control chars, pad CJK, lowercase, remove accents (NFD/Mn). */
+    normalize(text) {
+        let out = "";
+        for (const ch of text) {
+            const cp = ch.codePointAt(0);
+            if (cp === 0 || cp === 0xfffd)
+                continue; // invalid
+            if (cp !== 9 && cp !== 10 && cp !== 13 && cp < 32)
+                continue; // control chars
+            out += isCjk(cp) ? ` ${ch} ` : ch;
+        }
+        return out
+            .toLowerCase()
+            .normalize("NFD")
+            .replace(/\p{Mn}/gu, "");
+    }
+    /** Whitespace + punctuation split into basic tokens (BERT BasicTokenizer). */
+    basicTokenize(text) {
+        const tokens = [];
+        for (const word of this.normalize(text).split(/\s+/)) {
+            if (!word)
+                continue;
+            let cur = "";
+            for (const ch of word) {
+                if (isPunct(ch)) {
+                    if (cur) {
+                        tokens.push(cur);
+                        cur = "";
+                    }
+                    tokens.push(ch);
+                }
+                else {
+                    cur += ch;
+                }
+            }
+            if (cur)
+                tokens.push(cur);
+        }
+        return tokens;
+    }
+    /** Greedy longest-match-first WordPiece split of a single word. */
+    wordpiece(word) {
+        if (word.length > 200)
+            return [SPECIAL.unk]; // BERT max_input_chars_per_word
+        const out = [];
+        let start = 0;
+        while (start < word.length) {
+            let end = word.length;
+            let found = null;
+            while (start < end) {
+                const sub = (start > 0 ? "##" : "") + word.slice(start, end);
+                if (this.vocab.has(sub)) {
+                    found = sub;
+                    break;
+                }
+                end--;
+            }
+            if (found === null)
+                return [SPECIAL.unk]; // any unmatchable piece → whole word UNK
+            out.push(found);
+            start = end;
+        }
+        return out;
+    }
+    /**
+     * Encode text into `[CLS] … [SEP]` token ids (truncated to maxLen) plus an
+     * all-ones attention mask. We embed one text at a time (batch 1), so no
+     * padding is needed.
+     */
+    encode(text, maxLen = 256) {
+        const pieceIds = [];
+        for (const tok of this.basicTokenize(text)) {
+            for (const piece of this.wordpiece(tok)) {
+                pieceIds.push(this.vocab.get(piece) ?? this.unkId);
+            }
+        }
+        const body = pieceIds.slice(0, Math.max(0, maxLen - 2));
+        const inputIds = [this.clsId, ...body, this.sepId];
+        return { inputIds, attentionMask: inputIds.map(() => 1) };
+    }
+}
+//# sourceMappingURL=tokenizer.js.map

package/dist/tokenizer.js.map

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package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@abhishekmcp/notes",
-  "version": "0.1.1",
-  "description": "MCP server for local markdown notes — search, create, link, and read notes from any MCP client.",
+  "version": "0.3.0",
+  "description": "MCP server for local markdown notes — ranked search, tags, todos, and a wiki-link knowledge graph, from any MCP client.",
   "type": "module",
   "bin": {
     "mcp-notes": "dist/index.js"
@@ -43,6 +43,8 @@
   },
   "dependencies": {
     "@modelcontextprotocol/sdk": "^1.29.0",
+    "minisearch": "^7.1.0",
+    "onnxruntime-web": "^1.27.0",
     "zod": "^3.23.8"
   },
   "devDependencies": {