@abhinav2203/coderag 0.2.0 → 0.2.1

package/README.md

@@ -71,10 +71,22 @@ Supported environment overrides:
 
 - `CODERAG_REPO_PATH`
 - `CODERAG_STORAGE_ROOT`
+- `CODERAG_EMBEDDING_PROVIDER`
+- `CODERAG_EMBEDDING_DIMENSIONS`
+- `CODERAG_GEMINI_MODEL`
+- `CODERAG_GEMINI_API_KEY`
+- `CODERAG_EMBEDDING_TIMEOUT_MS`
 - `CODERAG_TOP_K`
 - `CODERAG_RERANK_K`
+- `CODERAG_MAX_CONTEXT_CHARS`
 - `CODERAG_DEFAULT_DEPTH`
 - `CODERAG_MAX_DEPTH`
+- `CODERAG_LOCK_TIMEOUT_MS`
+- `CODERAG_LOCK_POLL_MS`
+- `CODERAG_LOCK_STALE_MS`
+- `CODERAG_SERVICE_HOST`
+- `CODERAG_SERVICE_PORT`
+- `CODERAG_SERVICE_API_KEY`
 - `CODERAG_LLM_ENABLED`
 - `CODERAG_LLM_TRANSPORT`
 - `CODERAG_LLM_BASE_URL`
@@ -82,6 +94,7 @@ Supported environment overrides:
 - `CODERAG_LLM_API_KEY`
 - `CODERAG_LLM_TIMEOUT_MS`
 - `CODERAG_CUSTOM_HTTP_FORMAT`
+- `CODERAG_LLM_HEADERS`
 
 ## Local LLM integration
 
@@ -171,6 +184,7 @@ coderag index [--config path]
 coderag reindex [--config path] [--full]
 coderag query "question" [--config path] [--depth 2] [--json]
 coderag serve-mcp [--config path]
+coderag serve-http [--config path]
 coderag doctor [--config path]
 ```
 
@@ -183,6 +197,8 @@ coderag doctor [--config path]
 - JavaScript and TypeScript repos are supported.
 - Call-site extraction is best effort for dynamic dispatch, reflection, or generated code. Missing call sites are returned as unresolved metadata, not guessed values.
 - The built-in embedding strategy is deterministic and zero-setup. If you need stronger semantic recall, provide a custom embedding provider through the library API.
+- `serve-http` exposes `/health`, `/ready`, `/metrics`, and `/v1/*` endpoints. `/ready` only reports ready once the index exists, contains documents, and matches the configured embedding fingerprint.
+- If you use Gemini embeddings, set `CODERAG_GEMINI_API_KEY` before indexing so the persisted embedding fingerprint matches the configured model and dimensions.
 - Live E2E runs in this repo were verified against an OpenAI-compatible NVIDIA endpoint and against both the CodeRag and CodeFlow repositories.
 
 ## Development

package/dist/cli.js

@@ -21,6 +21,15 @@ const readFlagValue = (args, flag) => {
     const index = args.indexOf(flag);
     return index === -1 ? undefined : args[index + 1];
 };
+const parseDepthFlag = (value) => {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (!/^[1-9]\d*$/.test(value)) {
+        throw new Error("--depth must be a positive integer.");
+    }
+    return Number(value);
+};
 const hasFlag = (args, flag) => args.includes(flag);
 const readPositionals = (args) => {
     const positionals = [];
@@ -116,8 +125,7 @@ export const runCli = async (argv = process.argv) => {
             if (!question) {
                 throw new Error("query requires a question argument.");
             }
-            const depthValue = readFlagValue(args, "--depth");
-            const depth = depthValue ? Number(depthValue) : undefined;
+            const depth = parseDepthFlag(readFlagValue(args, "--depth"));
             const result = await coderag.query(question, {
                 depth,
                 onToken: hasFlag(args, JSON_FLAG)

package/dist/cli.js.map

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package/dist/indexer/documents.d.ts

@@ -10,10 +10,8 @@ export declare const buildNodeDocument: (node: BlueprintNode, span: SourceSpan |
  * and uses their content as the embedding text instead of generating thin markdown.
  */
 export declare const buildIndexedDocuments: (snapshot: GraphSnapshot, embeddingProvider: EmbeddingProvider, docsPath?: string) => Promise<Record<string, IndexedNodeDocument>>;
+export declare const INDEX_SCHEMA_VERSION = 2;
 /**
  * Builds the manifest used for incremental reindex decisions.
  */
-export declare const buildIndexManifest: (repoPath: string, snapshot: GraphSnapshot, documents: Record<string, IndexedNodeDocument>, embeddingProvider?: {
-    name: string;
-    dimensions: number;
-} | string) => Promise<IndexManifest>;
+export declare const buildIndexManifest: (repoPath: string, snapshot: GraphSnapshot, documents: Record<string, IndexedNodeDocument>, embeddingProvider?: Pick<EmbeddingProvider, "name" | "model" | "dimensions"> | string) => Promise<IndexManifest>;

package/dist/indexer/documents.js

@@ -123,21 +123,36 @@ const hashIndexedFile = async (repoPath, relativePath) => [
     relativePath,
     await hashFile(path.join(repoPath, relativePath))
 ];
-const SCHEMA_VERSION = 1;
+export const INDEX_SCHEMA_VERSION = 2;
+const resolveEmbeddingMetadata = (embeddingProvider) => {
+    if (typeof embeddingProvider === "string") {
+        return {
+            provider: embeddingProvider,
+            model: embeddingProvider,
+            dimensions: 256
+        };
+    }
+    return {
+        provider: embeddingProvider.name,
+        model: embeddingProvider.model,
+        dimensions: embeddingProvider.dimensions
+    };
+};
 /**
  * Builds the manifest used for incremental reindex decisions.
  */
 export const buildIndexManifest = async (repoPath, snapshot, documents, embeddingProvider = "local-hash") => {
     const uniquePaths = [...new Set(Object.values(documents).map((document) => document.filePath))];
     const fileHashes = Object.fromEntries(await Promise.all(uniquePaths.map((relativePath) => hashIndexedFile(repoPath, relativePath))));
-    const providerName = typeof embeddingProvider === "string" ? embeddingProvider : embeddingProvider.name;
+    const embeddingMetadata = resolveEmbeddingMetadata(embeddingProvider);
     return {
-        schemaVersion: SCHEMA_VERSION,
+        schemaVersion: INDEX_SCHEMA_VERSION,
         generatedAt: new Date().toISOString(),
         repoPath: snapshot.repoPath,
         provider: snapshot.provider,
-        embeddingProvider: providerName,
-        embeddingModel: providerName === "gemini" ? "models/gemini-embedding-2-preview" : "local-hash",
+        embeddingProvider: embeddingMetadata.provider,
+        embeddingModel: embeddingMetadata.model,
+        embeddingDimensions: embeddingMetadata.dimensions,
         nodes: Object.fromEntries(Object.values(documents).map((document) => [
             document.nodeId,
             {

package/dist/indexer/documents.js.map

@@ -1 +1 @@
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package/dist/indexer/embedder.d.ts

@@ -1,6 +1,7 @@
 import type { EmbeddingProvider } from "../types.js";
 export declare class LocalHashEmbeddingProvider implements EmbeddingProvider {
     readonly name = "local-hash";
+    readonly model = "local-hash";
     readonly dimensions: number;
     constructor(dimensions?: number);
     embed(text: string): Promise<number[]>;

package/dist/indexer/embedder.js

@@ -1,6 +1,7 @@
 import { embedTextDeterministically } from "../utils/text.js";
 export class LocalHashEmbeddingProvider {
     name = "local-hash";
+    model = "local-hash";
     dimensions;
     constructor(dimensions = 256) {
         this.dimensions = dimensions;

package/dist/indexer/embedder.js.map

@@ -1 +1 @@
-{"version":3,"file":"embedder.js","sourceRoot":"","sources":["../../src/indexer/embedder.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,0BAA0B,EAAE,MAAM,kBAAkB,CAAC;AAE9D,MAAM,OAAO,0BAA0B;IAC5B,IAAI,GAAG,YAAY,CAAC;IACpB,UAAU,CAAS;IAE5B,YAAY,UAAU,GAAG,GAAG;QAC1B,IAAI,CAAC,UAAU,GAAG,UAAU,CAAC;IAC/B,CAAC;IAED,KAAK,CAAC,KAAK,CAAC,IAAY;QACtB,OAAO,0BAA0B,CAAC,IAAI,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC;IAC3D,CAAC;CACF"}
+{"version":3,"file":"embedder.js","sourceRoot":"","sources":["../../src/indexer/embedder.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,0BAA0B,EAAE,MAAM,kBAAkB,CAAC;AAE9D,MAAM,OAAO,0BAA0B;IAC5B,IAAI,GAAG,YAAY,CAAC;IACpB,KAAK,GAAG,YAAY,CAAC;IACrB,UAAU,CAAS;IAE5B,YAAY,UAAU,GAAG,GAAG;QAC1B,IAAI,CAAC,UAAU,GAAG,UAAU,CAAC;IAC/B,CAAC;IAED,KAAK,CAAC,KAAK,CAAC,IAAY;QACtB,OAAO,0BAA0B,CAAC,IAAI,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC;IAC3D,CAAC;CACF"}

package/dist/indexer/gemini-embedder.d.ts

@@ -7,8 +7,8 @@ export interface GeminiEmbeddingConfig {
 export declare class GeminiEmbeddingProvider implements EmbeddingProvider {
     readonly name = "gemini";
     readonly dimensions = 768;
+    readonly model: string;
     private readonly apiKey;
-    private readonly model;
     private readonly timeoutMs;
     constructor(config?: GeminiEmbeddingConfig);
     embed(text: string): Promise<number[]>;

package/dist/indexer/gemini-embedder.js

@@ -4,8 +4,8 @@ const DEFAULT_MODEL = "models/gemini-embedding-2-preview";
 export class GeminiEmbeddingProvider {
     name = "gemini";
     dimensions = 768;
-    apiKey;
     model;
+    apiKey;
     timeoutMs;
     constructor(config) {
         const key = config?.apiKey ?? process.env.CODERAG_GEMINI_API_KEY;
@@ -24,21 +24,21 @@ export class GeminiEmbeddingProvider {
             const response = await fetch(url, {
                 method: "POST",
                 headers: {
-                    "Content-Type": "application/json",
+                    "Content-Type": "application/json"
                 },
                 body: JSON.stringify({
                     content: {
-                        parts: [{ text }],
-                    },
+                        parts: [{ text }]
+                    }
                 }),
-                signal: controller.signal,
+                signal: controller.signal
             });
             clearTimeout(timeoutId);
             if (!response.ok) {
                 const errorBody = await response.text();
                 throw new Error(`Gemini API error: ${response.status} ${response.statusText} - ${errorBody}`);
             }
-            const data = await response.json();
+            const data = (await response.json());
             if (!data.embedding?.values) {
                 throw new Error("Invalid response from Gemini API: missing embedding values");
             }
@@ -66,23 +66,23 @@ export class GeminiEmbeddingProvider {
             const response = await fetch(url, {
                 method: "POST",
                 headers: {
-                    "Content-Type": "application/json",
+                    "Content-Type": "application/json"
                 },
                 body: JSON.stringify({
                     requests: texts.map((text) => ({
                         content: {
-                            parts: [{ text }],
-                        },
-                    })),
+                            parts: [{ text }]
+                        }
+                    }))
                 }),
-                signal: controller.signal,
+                signal: controller.signal
             });
             clearTimeout(timeoutId);
             if (!response.ok) {
                 const errorBody = await response.text();
                 throw new Error(`Gemini API error: ${response.status} ${response.statusText} - ${errorBody}`);
             }
-            const data = await response.json();
+            const data = (await response.json());
             if (!data.embeddings || data.embeddings.length !== texts.length) {
                 throw new Error("Invalid response from Gemini API: mismatched embedding count");
             }

package/dist/indexer/gemini-embedder.js.map

@@ -1 +1 @@
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package/dist/indexer/indexer.d.ts

@@ -26,6 +26,9 @@ export declare class RepoIndexer {
         snapshot: GraphSnapshot | null;
         documents: Record<string, IndexedNodeDocument>;
     }>;
-    reindex(docsPath?: string): Promise<IndexSummary>;
+    reindex(options?: {
+        full?: boolean;
+        docsPath?: string;
+    }): Promise<IndexSummary>;
     index(forceFull?: boolean, docsPath?: string): Promise<IndexSummary>;
 }

package/dist/indexer/indexer.js

@@ -3,7 +3,7 @@ import { buildGraphSnapshot } from "../adapters/codeflow-core.js";
 import { IndexingError } from "../errors/index.js";
 import { ManifestStore } from "../store/manifest-store.js";
 import { IndexLock } from "../store/index-lock.js";
-import { buildIndexManifest, buildIndexedDocuments } from "./documents.js";
+import { buildIndexManifest, buildIndexedDocuments, INDEX_SCHEMA_VERSION } from "./documents.js";
 const diffNodeIds = (previousManifest, nextManifest) => {
     if (!previousManifest) {
         return {
@@ -31,6 +31,7 @@ const buildIndexSummary = (snapshot, manifest, documents) => ({
     snapshot,
     indexedNodeCount: Object.keys(documents).length
 });
+const formatEmbeddingFingerprint = (embedding) => `${embedding.provider}:${embedding.model}:${embedding.dimensions}`;
 /**
  * Indexes the repository graph and persists the resulting search documents.
  */
@@ -47,21 +48,30 @@ export class RepoIndexer {
      * Checks if a full reindex is required based on embedding model/schema changes.
      */
     async checkEmbeddingModelMismatch() {
-        const metadata = await this.config.vectorStore?.getMetadata();
         const currentEmbedding = this.config.embeddingProvider;
         if (!currentEmbedding) {
             return { mismatch: false, expected: "unknown", actual: null };
         }
-        const expectedProvider = currentEmbedding.name;
-        const expectedModel = expectedProvider === "gemini" ? "models/gemini-embedding-2-preview" : "local-hash";
-        const expected = `${expectedProvider}:${expectedModel}`;
-        if (!metadata) {
+        const expectedFingerprint = {
+            provider: currentEmbedding.name,
+            model: currentEmbedding.model,
+            dimensions: currentEmbedding.dimensions
+        };
+        const expected = formatEmbeddingFingerprint(expectedFingerprint);
+        const manifest = await this.manifestStore.loadManifest();
+        if (!manifest) {
             return { mismatch: false, expected, actual: null };
         }
-        const actualProvider = metadata.embeddingProvider ?? "local-hash";
-        const actualModel = metadata.embeddingModel ?? "local-hash";
-        const actual = `${actualProvider}:${actualModel}`;
-        const mismatch = metadata.schemaVersion !== 1 || actualProvider !== expectedProvider || actualModel !== expectedModel;
+        const actualFingerprint = {
+            provider: manifest.embeddingProvider,
+            model: manifest.embeddingModel,
+            dimensions: manifest.embeddingDimensions
+        };
+        const actual = formatEmbeddingFingerprint(actualFingerprint);
+        const mismatch = manifest.schemaVersion !== INDEX_SCHEMA_VERSION ||
+            actualFingerprint.provider !== expectedFingerprint.provider ||
+            actualFingerprint.model !== expectedFingerprint.model ||
+            actualFingerprint.dimensions !== expectedFingerprint.dimensions;
         return { mismatch, expected, actual };
     }
     async loadState() {
@@ -83,15 +93,28 @@ export class RepoIndexer {
             ...(await this.loadState())
         };
     }
-    async reindex(docsPath) {
+    async reindex(options = {}) {
+        const full = options.full ?? false;
         const { mismatch, expected, actual } = await this.checkEmbeddingModelMismatch();
-        if (!mismatch && actual !== null) {
-            this.config.logger?.info("No embedding model mismatch detected, using incremental index");
+        if (full) {
+            this.config.logger?.info("Running full CodeRag reindex.", {
+                expected,
+                actual: actual ?? "none"
+            });
+        }
+        else if (mismatch) {
+            this.config.logger?.warn("Incremental reindex requires a matching embedding fingerprint.", {
+                expected,
+                actual: actual ?? "none"
+            });
         }
         else {
-            this.config.logger?.info("Full reindex required", { expected, actual: actual ?? "none" });
+            this.config.logger?.info("Running incremental CodeRag reindex.", {
+                expected,
+                actual: actual ?? "none"
+            });
         }
-        return this.index(true, docsPath);
+        return this.index(full, options.docsPath);
     }
     async index(forceFull = false, docsPath) {
         const graphProvider = this.config.graphProvider;
@@ -135,6 +158,7 @@ export class RepoIndexer {
                     schemaVersion: manifest.schemaVersion,
                     embeddingProvider: manifest.embeddingProvider,
                     embeddingModel: manifest.embeddingModel,
+                    embeddingDimensions: manifest.embeddingDimensions,
                     generatedAt: manifest.generatedAt
                 })
             ]);

package/dist/indexer/indexer.js.map

@@ -1 +1 @@
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package/dist/mcp/server.js

@@ -9,7 +9,7 @@ const DEPTH_SCHEMA = z.number().int().min(0).optional();
 export const createMcpServer = (coderag) => {
     const server = new McpServer({
         name: "coderag",
-        version: "0.1.0"
+        version: "0.2.1"
     });
     server.registerTool("query", {
         title: "Query repository",

package/dist/service/coderag.d.ts

@@ -11,7 +11,7 @@ export declare class CodeRag {
     private loadedState?;
     constructor(config: CodeRagConfig);
     private hydrateState;
-    private runIndex;
+    private runIndexJob;
     private ensureLoadedState;
     private findNodeOrThrow;
     /**

package/dist/service/coderag.js

@@ -35,10 +35,9 @@ export class CodeRag {
         this.loadedState = state;
         return state;
     }
-    async runIndex(forceFull, docsPath) {
+    async runIndexJob(indexOperation) {
         if (!this.activeIndexPromise) {
-            this.activeIndexPromise = this.indexer
-                .index(forceFull, docsPath)
+            this.activeIndexPromise = indexOperation()
                 .then(async (summary) => {
                 const documents = await this.manifestStore.loadDocuments();
                 this.hydrateState(summary.snapshot, documents);
@@ -62,7 +61,7 @@ export class CodeRag {
         if (isStateLoaded(waitedState.snapshot, waitedState.documents)) {
             return this.hydrateState(waitedState.snapshot, waitedState.documents);
         }
-        await this.runIndex(false);
+        await this.runIndexJob(() => this.indexer.index(false));
         return this.loadedState;
     }
     findNodeOrThrow(identifier, snapshot) {
@@ -86,7 +85,7 @@ export class CodeRag {
      * and uses their content as the embedding text instead of generating thin markdown.
      */
     async index(options) {
-        return this.runIndex(true, options?.docsPath);
+        return this.runIndexJob(() => this.indexer.index(true, options?.docsPath));
     }
     /**
      * Reindexes the repository, incrementally by default.
@@ -94,17 +93,20 @@ export class CodeRag {
      * and uses their content as the embedding text instead of generating thin markdown.
      */
     async reindex(options) {
-        // reindex always does a full rebuild with model wipe
-        await this.config.vectorStore?.clear();
-        return this.runIndex(true, options?.docsPath);
+        return this.runIndexJob(() => this.indexer.reindex({
+            full: options?.full ?? false,
+            docsPath: options?.docsPath
+        }));
     }
     /**
      * Returns the current repository and runtime status.
      */
     async status() {
         const state = await this.indexer.loadState();
-        const vectorMetadata = await this.config.vectorStore?.getMetadata();
         const { mismatch, expected, actual } = await this.indexer.checkEmbeddingModelMismatch();
+        const embeddingProvider = state.manifest?.embeddingProvider ?? this.config.embeddingProvider?.name ?? "unknown";
+        const embeddingModel = state.manifest?.embeddingModel ?? this.config.embeddingProvider?.model ?? "unknown";
+        const embeddingDimensions = state.manifest?.embeddingDimensions ?? this.config.embeddingProvider?.dimensions ?? 0;
         return {
             indexed: Boolean(state.snapshot),
             indexedNodeCount: Object.keys(state.documents).length,
@@ -113,9 +115,10 @@ export class CodeRag {
             storageRoot: this.config.storageRoot,
             provider: state.snapshot?.provider ?? this.config.graphProvider?.name ?? null,
             llmEnabled: this.config.llm.enabled,
-            embeddingProvider: this.config.embeddingProvider?.name ?? "unknown",
-            embeddingModel: vectorMetadata?.embeddingModel ?? "unknown",
-            indexSchemaVersion: vectorMetadata?.schemaVersion ?? 0,
+            embeddingProvider,
+            embeddingModel,
+            embeddingDimensions,
+            indexSchemaVersion: state.manifest?.schemaVersion ?? 0,
             modelMismatch: mismatch,
             expectedEmbedding: expected,
             actualEmbedding: actual

package/dist/service/coderag.js.map

@@ -1 +1 @@
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package/dist/service/http.js

@@ -124,6 +124,10 @@ const errorResponse = (error) => {
         message: "An error occurred."
     };
 };
+const isReadyStatus = (status) => status.indexed === true &&
+    typeof status.indexedNodeCount === "number" &&
+    status.indexedNodeCount > 0 &&
+    status.modelMismatch === false;
 const createQueryHandler = (coderag) => async (request, response, requestId) => {
     const body = await readJsonBody(request, queryBodySchema);
     const result = await coderag.query(body.question, {
@@ -146,7 +150,7 @@ const createImpactHandler = (coderag) => async (request, response, requestId) =>
 };
 const createIndexHandler = (coderag) => async (request, response, requestId) => {
     const body = await readJsonBody(request, reindexBodySchema);
-    const result = body.full ? await coderag.index() : await coderag.reindex({ full: false });
+    const result = await coderag.reindex({ full: body.full ?? false });
     writeJson(request, response, 200, requestId, { data: result, requestId });
 };
 const createReindexHandler = (coderag) => async (request, response, requestId) => {
@@ -164,8 +168,9 @@ const createHealthHandler = (coderag) => async (request, response, requestId) =>
 };
 const createReadyHandler = (coderag) => async (request, response, requestId) => {
     const status = await coderag.status();
-    writeJson(request, response, 200, requestId, {
-        data: { ready: true, status },
+    const ready = isReadyStatus(status);
+    writeJson(request, response, ready ? 200 : 503, requestId, {
+        data: { ready, status },
         requestId
     });
 };

package/dist/service/http.js.map

@@ -1 +1 @@
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package/dist/store/manifest-store.d.ts

@@ -1,4 +1,4 @@
-import type { GraphSnapshot, IndexManifest, IndexedNodeDocument } from "../types.js";
+import { type GraphSnapshot, type IndexManifest, type IndexedNodeDocument } from "../types.js";
 /**
  * Persists the graph snapshot, manifest, and node documents used by CodeRag.
  */

package/dist/store/manifest-store.js

@@ -1,15 +1,18 @@
 import path from "node:path";
+import { z } from "zod";
 import { IndexingError } from "../errors/index.js";
+import { graphSnapshotSchema, indexedNodeDocumentSchema, indexManifestSchema } from "../types.js";
 import { fileExists, readJson, writeJson } from "../utils/filesystem.js";
 const MANIFEST_FILE = "index-manifest.json";
 const SNAPSHOT_FILE = "graph-snapshot.json";
 const DOCUMENTS_FILE = "documents.json";
-const loadOptionalJson = async (filePath) => {
+const documentMapSchema = z.record(z.string(), indexedNodeDocumentSchema);
+const loadOptionalJson = async (filePath, schema) => {
     if (!(await fileExists(filePath))) {
         return null;
     }
     try {
-        return await readJson(filePath);
+        return schema.parse(await readJson(filePath));
     }
     catch (error) {
         throw new IndexingError("Failed to read persisted CodeRag state.", { filePath }, { cause: error });
@@ -28,19 +31,19 @@ export class ManifestStore {
         this.documentsPath = path.join(storageRoot, DOCUMENTS_FILE);
     }
     async loadManifest() {
-        return loadOptionalJson(this.manifestPath);
+        return loadOptionalJson(this.manifestPath, indexManifestSchema);
     }
     async saveManifest(manifest) {
         await writeJson(this.manifestPath, manifest);
     }
     async loadSnapshot() {
-        return loadOptionalJson(this.snapshotPath);
+        return loadOptionalJson(this.snapshotPath, graphSnapshotSchema);
     }
     async saveSnapshot(snapshot) {
         await writeJson(this.snapshotPath, snapshot);
     }
     async loadDocuments() {
-        return (await loadOptionalJson(this.documentsPath)) ?? {};
+        return (await loadOptionalJson(this.documentsPath, documentMapSchema)) ?? {};
     }
     async saveDocuments(documents) {
         await writeJson(this.documentsPath, documents);

package/dist/store/manifest-store.js.map

@@ -1 +1 @@
-{"version":3,"file":"manifest-store.js","sourceRoot":"","sources":["../../src/store/manifest-store.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAC;AAE7B,OAAO,EAAE,aAAa,EAAE,MAAM,oBAAoB,CAAC;AAEnD,OAAO,EAAE,UAAU,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AAEzE,MAAM,aAAa,GAAG,qBAAqB,CAAC;AAC5C,MAAM,aAAa,GAAG,qBAAqB,CAAC;AAC5C,MAAM,cAAc,GAAG,gBAAgB,CAAC;AAExC,MAAM,gBAAgB,GAAG,KAAK,EAAS,QAAgB,EAAyB,EAAE;IAChF,IAAI,CAAC,CAAC,MAAM,UAAU,CAAC,QAAQ,CAAC,CAAC,EAAE,CAAC;QAClC,OAAO,IAAI,CAAC;IACd,CAAC;IAED,IAAI,CAAC;QACH,OAAO,MAAM,QAAQ,CAAQ,QAAQ,CAAC,CAAC;IACzC,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,MAAM,IAAI,aAAa,CAAC,yCAAyC,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC,CAAC;IACrG,CAAC;AACH,CAAC,CAAC;AAEF;;GAEG;AACH,MAAM,OAAO,aAAa;IACP,YAAY,CAAS;IACrB,YAAY,CAAS;IACrB,aAAa,CAAS;IAEvC,YAAY,WAAmB;QAC7B,IAAI,CAAC,YAAY,GAAG,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,aAAa,CAAC,CAAC;QAC1D,IAAI,CAAC,YAAY,GAAG,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,aAAa,CAAC,CAAC;QAC1D,IAAI,CAAC,aAAa,GAAG,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,cAAc,CAAC,CAAC;IAC9D,CAAC;IAED,KAAK,CAAC,YAAY;QAChB,OAAO,gBAAgB,CAAgB,IAAI,CAAC,YAAY,CAAC,CAAC;IAC5D,CAAC;IAED,KAAK,CAAC,YAAY,CAAC,QAAuB;QACxC,MAAM,SAAS,CAAC,IAAI,CAAC,YAAY,EAAE,QAAQ,CAAC,CAAC;IAC/C,CAAC;IAED,KAAK,CAAC,YAAY;QAChB,OAAO,gBAAgB,CAAgB,IAAI,CAAC,YAAY,CAAC,CAAC;IAC5D,CAAC;IAED,KAAK,CAAC,YAAY,CAAC,QAAuB;QACxC,MAAM,SAAS,CAAC,IAAI,CAAC,YAAY,EAAE,QAAQ,CAAC,CAAC;IAC/C,CAAC;IAED,KAAK,CAAC,aAAa;QACjB,OAAO,CAAC,MAAM,gBAAgB,CAAsC,IAAI,CAAC,aAAa,CAAC,CAAC,IAAI,EAAE,CAAC;IACjG,CAAC;IAED,KAAK,CAAC,aAAa,CAAC,SAA8C;QAChE,MAAM,SAAS,CAAC,IAAI,CAAC,aAAa,EAAE,SAAS,CAAC,CAAC;IACjD,CAAC;CACF"}
+{"version":3,"file":"manifest-store.js","sourceRoot":"","sources":["../../src/store/manifest-store.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAC;AAE7B,OAAO,EAAE,CAAC,EAAmB,MAAM,KAAK,CAAC;AAEzC,OAAO,EAAE,aAAa,EAAE,MAAM,oBAAoB,CAAC;AACnD,OAAO,EACL,mBAAmB,EACnB,yBAAyB,EACzB,mBAAmB,EAIpB,MAAM,aAAa,CAAC;AACrB,OAAO,EAAE,UAAU,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AAEzE,MAAM,aAAa,GAAG,qBAAqB,CAAC;AAC5C,MAAM,aAAa,GAAG,qBAAqB,CAAC;AAC5C,MAAM,cAAc,GAAG,gBAAgB,CAAC;AAExC,MAAM,iBAAiB,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,EAAE,EAAE,yBAAyB,CAAC,CAAC;AAE1E,MAAM,gBAAgB,GAAG,KAAK,EAAS,QAAgB,EAAE,MAAkB,EAAyB,EAAE;IACpG,IAAI,CAAC,CAAC,MAAM,UAAU,CAAC,QAAQ,CAAC,CAAC,EAAE,CAAC;QAClC,OAAO,IAAI,CAAC;IACd,CAAC;IAED,IAAI,CAAC;QACH,OAAO,MAAM,CAAC,KAAK,CAAC,MAAM,QAAQ,CAAU,QAAQ,CAAC,CAAU,CAAC;IAClE,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,MAAM,IAAI,aAAa,CAAC,yCAAyC,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC,CAAC;IACrG,CAAC;AACH,CAAC,CAAC;AAEF;;GAEG;AACH,MAAM,OAAO,aAAa;IACP,YAAY,CAAS;IACrB,YAAY,CAAS;IACrB,aAAa,CAAS;IAEvC,YAAY,WAAmB;QAC7B,IAAI,CAAC,YAAY,GAAG,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,aAAa,CAAC,CAAC;QAC1D,IAAI,CAAC,YAAY,GAAG,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,aAAa,CAAC,CAAC;QAC1D,IAAI,CAAC,aAAa,GAAG,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,cAAc,CAAC,CAAC;IAC9D,CAAC;IAED,KAAK,CAAC,YAAY;QAChB,OAAO,gBAAgB,CAAgB,IAAI,CAAC,YAAY,EAAE,mBAAmB,CAAC,CAAC;IACjF,CAAC;IAED,KAAK,CAAC,YAAY,CAAC,QAAuB;QACxC,MAAM,SAAS,CAAC,IAAI,CAAC,YAAY,EAAE,QAAQ,CAAC,CAAC;IAC/C,CAAC;IAED,KAAK,CAAC,YAAY;QAChB,OAAO,gBAAgB,CAAgB,IAAI,CAAC,YAAY,EAAE,mBAAmB,CAAC,CAAC;IACjF,CAAC;IAED,KAAK,CAAC,YAAY,CAAC,QAAuB;QACxC,MAAM,SAAS,CAAC,IAAI,CAAC,YAAY,EAAE,QAAQ,CAAC,CAAC;IAC/C,CAAC;IAED,KAAK,CAAC,aAAa;QACjB,OAAO,CAAC,MAAM,gBAAgB,CAAsC,IAAI,CAAC,aAAa,EAAE,iBAAiB,CAAC,CAAC,IAAI,EAAE,CAAC;IACpH,CAAC;IAED,KAAK,CAAC,aAAa,CAAC,SAA8C;QAChE,MAAM,SAAS,CAAC,IAAI,CAAC,aAAa,EAAE,SAAS,CAAC,CAAC;IACjD,CAAC;CACF"}

package/dist/store/vector-store.js

@@ -1,10 +1,13 @@
 import fs from "node:fs/promises";
 import path from "node:path";
 import * as lancedb from "@lancedb/lancedb";
+import { IndexingError } from "../errors/index.js";
 import { ensureDir, fileExists, readJson, writeJson } from "../utils/filesystem.js";
 const TABLE_NAME = "node_documents";
 const METADATA_FILE = "store-metadata.json";
-const DELETE_ALL_FILTER = "\"nodeId\" IS NOT NULL";
+const DELETE_ALL_FILTER = "`nodeId` IS NOT NULL";
+const toSqlStringLiteral = (value) => `'${value.replaceAll("'", "''")}'`;
+const createNodeIdFilter = (nodeIds) => `\`nodeId\` IN (${nodeIds.map(toSqlStringLiteral).join(", ")})`;
 export const toRow = (record) => ({
     nodeId: record.nodeId,
     name: record.name,
@@ -128,9 +131,11 @@ export class LanceVectorStore {
         if (!table) {
             return [];
         }
-        const rows = await table.query().limit(Math.max(nodeIds.length * 8, 32)).toArray();
-        const requestedNodeIds = new Set(nodeIds);
-        return rows.map((row) => fromRow(row)).filter((row) => requestedNodeIds.has(row.nodeId));
+        const rows = await table.query().where(createNodeIdFilter(nodeIds)).toArray();
+        const rowsByNodeId = new Map(rows.map((row) => fromRow(row)).map((row) => [row.nodeId, row]));
+        return nodeIds
+            .map((nodeId) => rowsByNodeId.get(nodeId))
+            .filter((row) => Boolean(row));
     }
     async close() {
         const table = await this.getTable();
@@ -149,8 +154,8 @@ export class LanceVectorStore {
         try {
             return await readJson(metadataPath);
         }
-        catch {
-            return null;
+        catch (error) {
+            throw new IndexingError("Failed to read vector store metadata.", { metadataPath }, { cause: error });
         }
     }
     async setMetadata(metadata) {

package/dist/store/vector-store.js.map

@@ -1 +1 @@
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package/dist/types.d.ts

@@ -119,6 +119,138 @@ export declare const serializableConfigSchema: z.ZodObject<{
     docsPath: z.ZodOptional<z.ZodString>;
 }, z.core.$strip>;
 export type SerializableCodeRagConfig = z.infer<typeof serializableConfigSchema>;
+export declare const sourceSpanSchema: z.ZodObject<{
+    nodeId: z.ZodString;
+    filePath: z.ZodString;
+    startLine: z.ZodNumber;
+    endLine: z.ZodNumber;
+    symbol: z.ZodOptional<z.ZodString>;
+}, z.core.$strip>;
+export declare const callSiteSchema: z.ZodObject<{
+    edgeKey: z.ZodString;
+    fromNodeId: z.ZodString;
+    toNodeId: z.ZodString;
+    filePath: z.ZodString;
+    lineNumbers: z.ZodArray<z.ZodNumber>;
+    expressions: z.ZodArray<z.ZodString>;
+}, z.core.$strip>;
+export declare const indexedNodeDocumentSchema: z.ZodObject<{
+    nodeId: z.ZodString;
+    name: z.ZodString;
+    kind: z.ZodCustom<"function" | "module" | "api" | "class" | "ui-screen", "function" | "module" | "api" | "class" | "ui-screen">;
+    filePath: z.ZodString;
+    summary: z.ZodString;
+    signature: z.ZodOptional<z.ZodString>;
+    doc: z.ZodString;
+    sourceText: z.ZodOptional<z.ZodString>;
+    vector: z.ZodArray<z.ZodNumber>;
+    startLine: z.ZodNumber;
+    endLine: z.ZodNumber;
+}, z.core.$strip>;
+export declare const graphSnapshotSchema: z.ZodObject<{
+    provider: z.ZodString;
+    repoPath: z.ZodString;
+    generatedAt: z.ZodString;
+    graph: z.ZodObject<{
+        projectName: z.ZodString;
+        mode: z.ZodEnum<{
+            essential: "essential";
+            yolo: "yolo";
+        }>;
+        phase: z.ZodEnum<{
+            spec: "spec";
+            implementation: "implementation";
+            integration: "integration";
+        }>;
+        generatedAt: z.ZodString;
+        nodes: z.ZodArray<z.ZodObject<{
+            id: z.ZodString;
+            kind: z.ZodCustom<"function" | "module" | "api" | "class" | "ui-screen", "function" | "module" | "api" | "class" | "ui-screen">;
+            name: z.ZodString;
+            summary: z.ZodString;
+            path: z.ZodOptional<z.ZodString>;
+            signature: z.ZodOptional<z.ZodString>;
+            contract: z.ZodObject<{
+                responsibilities: z.ZodDefault<z.ZodArray<z.ZodString>>;
+                inputs: z.ZodDefault<z.ZodArray<z.ZodObject<{
+                    name: z.ZodString;
+                    type: z.ZodString;
+                    description: z.ZodOptional<z.ZodString>;
+                }, z.core.$strip>>>;
+                outputs: z.ZodDefault<z.ZodArray<z.ZodObject<{
+                    name: z.ZodString;
+                    type: z.ZodString;
+                    description: z.ZodOptional<z.ZodString>;
+                }, z.core.$strip>>>;
+                dependencies: z.ZodDefault<z.ZodArray<z.ZodString>>;
+            }, z.core.$loose>;
+            sourceRefs: z.ZodDefault<z.ZodArray<z.ZodObject<{
+                kind: z.ZodString;
+                path: z.ZodOptional<z.ZodString>;
+                symbol: z.ZodOptional<z.ZodString>;
+                section: z.ZodOptional<z.ZodString>;
+                detail: z.ZodOptional<z.ZodString>;
+            }, z.core.$loose>>>;
+        }, z.core.$loose>>;
+        edges: z.ZodArray<z.ZodObject<{
+            from: z.ZodString;
+            to: z.ZodString;
+            kind: z.ZodString;
+        }, z.core.$loose>>;
+        workflows: z.ZodDefault<z.ZodArray<z.ZodUnknown>>;
+        warnings: z.ZodDefault<z.ZodArray<z.ZodString>>;
+    }, z.core.$loose>;
+    sourceSpans: z.ZodRecord<z.ZodString, z.ZodObject<{
+        nodeId: z.ZodString;
+        filePath: z.ZodString;
+        startLine: z.ZodNumber;
+        endLine: z.ZodNumber;
+        symbol: z.ZodOptional<z.ZodString>;
+    }, z.core.$strip>>;
+    callSites: z.ZodRecord<z.ZodString, z.ZodObject<{
+        edgeKey: z.ZodString;
+        fromNodeId: z.ZodString;
+        toNodeId: z.ZodString;
+        filePath: z.ZodString;
+        lineNumbers: z.ZodArray<z.ZodNumber>;
+        expressions: z.ZodArray<z.ZodString>;
+    }, z.core.$strip>>;
+}, z.core.$strip>;
+export declare const indexManifestNodeEntrySchema: z.ZodObject<{
+    nodeId: z.ZodString;
+    filePath: z.ZodString;
+    docHash: z.ZodString;
+    fileHash: z.ZodString;
+}, z.core.$strip>;
+export declare const indexManifestSchema: z.ZodObject<{
+    schemaVersion: z.ZodNumber;
+    generatedAt: z.ZodString;
+    repoPath: z.ZodString;
+    provider: z.ZodString;
+    embeddingProvider: z.ZodEnum<{
+        "local-hash": "local-hash";
+        gemini: "gemini";
+    }>;
+    embeddingModel: z.ZodString;
+    embeddingDimensions: z.ZodNumber;
+    nodes: z.ZodRecord<z.ZodString, z.ZodObject<{
+        nodeId: z.ZodString;
+        filePath: z.ZodString;
+        docHash: z.ZodString;
+        fileHash: z.ZodString;
+    }, z.core.$strip>>;
+    fileHashes: z.ZodRecord<z.ZodString, z.ZodString>;
+}, z.core.$strip>;
+export declare const vectorStoreMetadataSchema: z.ZodObject<{
+    schemaVersion: z.ZodNumber;
+    embeddingProvider: z.ZodEnum<{
+        "local-hash": "local-hash";
+        gemini: "gemini";
+    }>;
+    embeddingModel: z.ZodString;
+    embeddingDimensions: z.ZodNumber;
+    generatedAt: z.ZodOptional<z.ZodString>;
+}, z.core.$strip>;
 export interface Logger {
     debug(message: string, context?: Record<string, unknown>): void;
     info(message: string, context?: Record<string, unknown>): void;
@@ -174,6 +306,7 @@ export interface IndexManifest {
     provider: string;
     embeddingProvider: EmbeddingProviderKind;
     embeddingModel: string;
+    embeddingDimensions: number;
     nodes: Record<string, IndexManifestNodeEntry>;
     fileHashes: Record<string, string>;
 }
@@ -236,6 +369,7 @@ export interface IndexSummary {
 }
 export interface EmbeddingProvider {
     readonly name: string;
+    readonly model: string;
     readonly dimensions: number;
     embed(text: string): Promise<number[]>;
 }

package/dist/types.js

@@ -73,4 +73,118 @@ export const serializableConfigSchema = z.object({
     }),
     docsPath: z.string().optional()
 });
+const persistedNodeKindSchema = z.custom((value) => typeof value === "string" && value.length > 0, "Expected a non-empty blueprint node kind.");
+const persistedContractFieldSchema = z.object({
+    name: z.string().min(1),
+    type: z.string().min(1),
+    description: z.string().optional()
+});
+const persistedSourceRefSchema = z
+    .object({
+    kind: z.string().min(1),
+    path: z.string().optional(),
+    symbol: z.string().optional(),
+    section: z.string().optional(),
+    detail: z.string().optional()
+})
+    .passthrough();
+const persistedContractSchema = z
+    .object({
+    responsibilities: z.array(z.string()).default([]),
+    inputs: z.array(persistedContractFieldSchema).default([]),
+    outputs: z.array(persistedContractFieldSchema).default([]),
+    dependencies: z.array(z.string()).default([])
+})
+    .passthrough();
+export const sourceSpanSchema = z.object({
+    nodeId: z.string().min(1),
+    filePath: z.string().min(1),
+    startLine: z.number().int().positive(),
+    endLine: z.number().int().positive(),
+    symbol: z.string().optional()
+});
+export const callSiteSchema = z.object({
+    edgeKey: z.string().min(1),
+    fromNodeId: z.string().min(1),
+    toNodeId: z.string().min(1),
+    filePath: z.string().min(1),
+    lineNumbers: z.array(z.number().int().positive()),
+    expressions: z.array(z.string())
+});
+export const indexedNodeDocumentSchema = z.object({
+    nodeId: z.string().min(1),
+    name: z.string().min(1),
+    kind: persistedNodeKindSchema,
+    filePath: z.string().min(1),
+    summary: z.string(),
+    signature: z.string().optional(),
+    doc: z.string(),
+    sourceText: z.string().optional(),
+    vector: z.array(z.number()),
+    startLine: z.number().int().positive(),
+    endLine: z.number().int().positive()
+});
+const persistedBlueprintNodeSchema = z
+    .object({
+    id: z.string().min(1),
+    kind: persistedNodeKindSchema,
+    name: z.string().min(1),
+    summary: z.string(),
+    path: z.string().optional(),
+    signature: z.string().optional(),
+    contract: persistedContractSchema,
+    sourceRefs: z.array(persistedSourceRefSchema).default([])
+})
+    .passthrough();
+const persistedBlueprintEdgeSchema = z
+    .object({
+    from: z.string().min(1),
+    to: z.string().min(1),
+    kind: z.string().min(1)
+})
+    .passthrough();
+const persistedBlueprintGraphSchema = z
+    .object({
+    projectName: z.string().min(1),
+    mode: z.enum(["essential", "yolo"]),
+    phase: z.enum(["spec", "implementation", "integration"]),
+    generatedAt: z.string().min(1),
+    nodes: z.array(persistedBlueprintNodeSchema),
+    edges: z.array(persistedBlueprintEdgeSchema),
+    workflows: z.array(z.unknown()).default([]),
+    warnings: z.array(z.string()).default([])
+})
+    .passthrough();
+export const graphSnapshotSchema = z.object({
+    provider: z.string().min(1),
+    repoPath: z.string().min(1),
+    generatedAt: z.string().min(1),
+    graph: persistedBlueprintGraphSchema,
+    sourceSpans: z.record(z.string(), sourceSpanSchema),
+    callSites: z.record(z.string(), callSiteSchema)
+});
+export const indexManifestNodeEntrySchema = z.object({
+    nodeId: z.string().min(1),
+    filePath: z.string().min(1),
+    docHash: z.string().min(1),
+    fileHash: z.string().min(1)
+});
+export const indexManifestSchema = z.object({
+    schemaVersion: z.number().int().positive(),
+    generatedAt: z.string().min(1),
+    repoPath: z.string().min(1),
+    provider: z.string().min(1),
+    embeddingProvider: embeddingProviderKindSchema,
+    embeddingModel: z.string().min(1),
+    embeddingDimensions: z.number().int().positive(),
+    nodes: z.record(z.string(), indexManifestNodeEntrySchema),
+    fileHashes: z.record(z.string(), z.string().min(1))
+});
+export const vectorStoreMetadataSchema = z.object({
+    schemaVersion: z.number().int().positive(),
+    embeddingProvider: embeddingProviderKindSchema,
+    embeddingModel: z.string().min(1),
+    embeddingDimensions: z.number().int().positive(),
+    generatedAt: z.string().min(1).optional()
+});
 //# sourceMappingURL=types.js.map

package/dist/types.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@abhinav2203/coderag",
-  "version": "0.2.0",
+  "version": "0.2.1",
   "description": "Standalone code retrieval and MCP server for JS/TS repositories built on @abhinav2203/codeflow-core.",
   "license": "Apache-2.0",
   "type": "module",