@abasb75/dicom-parser 0.0.2-test → 0.0.3-a

package/package.json

@@ -1,27 +1,27 @@
 {
-    "name": "@abasb75/dicom-parser",
-    "version": "0.0.2-test",
-    "description": "a javascript powerfull dicom parser",
-    "main": "index.js",
-    "type": "module",
-    "types": "index.d.ts",
-    "keywords": [
-      "dicom",
-      "dcm",
-      "dcmjs",
-      "dicom-parser",
-      "pacs"
-    ],
-    "author": "Abbas Bagheri <abasbagheria@gmail.com>",
-    "license": "ISC",
-    "repository": {
-      "type": "git",
-      "url": "git+https://github.com/abasb75/dicom-parser/raction.git"
-    },
-      "bugs": {
-      "url": "https://github.com/abasb75/dicom-parser/issues"
-    },
-      "homepage": "https://github.com/abasb75/dicom-parser#readme"
-      
+  "name": "@abasb75/dicom-parser",
+  "version": "0.0.3a",
+  "description": "A lightweight DICOM parser.",
+  "main": "dist/index.js",
+  "module": "dist/index.js",
+  "types": "dist/index.d.ts",
+  "files": [
+    "dist"
+  ],
+  "scripts": {
+    "build": "tsup"
+  },
+  "dependencies": {
+    "pako": "^2.1.0"
+  },
+  "keywords": [
+    "dicom",
+    "parser",
+    "medical",
+    "radiology"
+  ],
+  "license": "MIT",
+  "devDependencies": {
+    "tsup": "^8.5.1"
   }
-  
+}

package/Dataset.d.ts

@@ -1,35 +0,0 @@
-import { Tags } from "./types";
-declare class Dataset {
-    tags: Tags;
-    transferSyntaxUID: string;
-    dataView: DataView;
-    studyInstanceUID: string;
-    studyID: string;
-    numberOfFrames: number | undefined;
-    windowWidth: number | string | undefined;
-    windowCenter: number | string | undefined;
-    seriesInstanceUID: string;
-    seriesNumber: number | string | undefined;
-    studyDate: string;
-    studyTime: number | string | undefined;
-    pixelRepresentation: number | string | undefined;
-    littleEndian: boolean;
-    pixeSpacing: number | number[] | string | undefined;
-    accessionNumber: string;
-    bitsAllocated: number | string | undefined;
-    imageType: number | string | number[] | string[] | undefined;
-    modality: number | string | number[] | string[] | undefined;
-    seriesDescription: string;
-    rows: string | number | undefined;
-    columns: string | number | undefined;
-    patientSex: any;
-    patientAge: string;
-    constructor(tags: Tags, dataView: DataView, littleEndian: boolean);
-    int(group: number, element: number): number | undefined;
-    get(group: number, element: number): string;
-    string(group: number, element: number): string;
-    getValue(element: number | string, elementId?: number | string, vr?: string): string | number | (string | number)[] | undefined;
-    private _getValue;
-    private _reformatToString;
-}
-export default Dataset;

package/Dataset.js

@@ -1,241 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const Tag_1 = require("./Tag");
-const Value_1 = require("./Value");
-class Dataset {
-    constructor(tags, dataView, littleEndian) {
-        Object.defineProperty(this, "tags", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "transferSyntaxUID", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: "1.2.840.10008.1.2"
-        });
-        Object.defineProperty(this, "dataView", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "studyInstanceUID", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: ""
-        });
-        Object.defineProperty(this, "studyID", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: ""
-        });
-        Object.defineProperty(this, "numberOfFrames", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "windowWidth", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "windowCenter", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "seriesInstanceUID", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "seriesNumber", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "studyDate", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "studyTime", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "pixelRepresentation", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "littleEndian", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "pixeSpacing", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "accessionNumber", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "bitsAllocated", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "imageType", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "modality", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "seriesDescription", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "rows", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "columns", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "patientSex", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "patientAge", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        this.tags = tags;
-        this.dataView = dataView;
-        this.littleEndian = littleEndian;
-        this.studyID = this.get(0x0020, 0x0010);
-        this.studyInstanceUID = this.string(0x0020, 0x000D);
-        this.numberOfFrames = this.int(0x0028, 0x0008);
-        this.windowWidth = this.get(0x0028, 0x1050);
-        this.windowCenter = this.get(0x0028, 0x1051);
-        this.seriesInstanceUID = this.get(0x0020, 0x000E);
-        this.seriesNumber = this.get(0x0020, 0x0011);
-        this.studyDate = this.get(0x0008, 0x0020);
-        this.studyTime = this.get(0x0008, 0x0030);
-        this.pixelRepresentation = this.get(0x0028, 0x0103);
-        this.pixeSpacing = this.get(0x0028, 0x0030);
-        this.accessionNumber = this.string(0x0008, 0x0050);
-        this.bitsAllocated = this.get(0x0028, 0x0100);
-        this.imageType = this.get(0x0008, 0x0008);
-        this.modality = this.get(0x0008, 0x0060);
-        this.seriesDescription = this.string(0x0008, 0x103E);
-        this.patientSex = this.get(0x0010, 0x0040);
-        this.rows = this.get(0x0028, 0x0010);
-        this.columns = this.get(0x0028, 0x0011);
-        this.patientAge = this.get(0x0010, 0x1010);
-    }
-    int(group, element) {
-        const is = this.getValue(group, element, "IS");
-        if (typeof is === "number") {
-            return is;
-        }
-        else {
-            return undefined;
-        }
-    }
-    get(group, element) {
-        const value = this.getValue(group, element);
-        return value;
-    }
-    string(group, element) {
-        return this.getValue(group, element) + "";
-    }
-    getValue(element, elementId, vr) {
-        var _a;
-        if (!element && !elementId) {
-            return "";
-        }
-        let _group, _element = "";
-        if (typeof element === 'string' && element.length >= 8) {
-            const el = element.replace(/^0[xX]/, '');
-            if (el.length !== 8) {
-                return "";
-            }
-            _group = el.slice(0, 3);
-            _element = el.slice(4, 7);
-        }
-        else if (typeof element === 'number' && element > 0xffff) {
-            const el = Tag_1.default.intTo4digitString(element);
-            _group = el.slice(0, 3);
-            _element = el.slice(4, 7);
-        }
-        else {
-            _group = this._reformatToString(element);
-            _element = this._reformatToString(elementId);
-            if (!_group || !_element)
-                return "";
-        }
-        const key = `0x${_group}${_element}`;
-        if (!this.tags[key]) {
-            return "";
-        }
-        const _vr = vr || ((_a = this.tags[key]) === null || _a === void 0 ? void 0 : _a.vr) || Tag_1.default.getTagVRFromDictionary(_group, _element) || "AA";
-        return this._getValue(this.tags[key], _vr);
-    }
-    _getValue(tag, vr = "AA") {
-        const offset = tag.offset;
-        if (!offset)
-            return "";
-        const len = tag.valueLength;
-        const value = Value_1.default.byVr(this.dataView, offset, len, vr, this.littleEndian);
-        tag.value = value;
-        return value;
-    }
-    _reformatToString(input) {
-        if (!input)
-            return "";
-        if (typeof input === "string") {
-            return input.replace(/^0[xX]/, '');
-        }
-        return Tag_1.default.intTo4digitString(input);
-    }
-}
-exports.default = Dataset;

package/Loader.d.ts

@@ -1,8 +0,0 @@
-declare class Loader {
-    private dicomSrc;
-    private xhr;
-    constructor(dicomSrc?: string);
-    load(dicomSrc?: string | File): Promise<ArrayBuffer | undefined>;
-    cancel(): void;
-}
-export default Loader;

package/Loader.js

@@ -1,65 +0,0 @@
-"use strict";
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-class Loader {
-    constructor(dicomSrc) {
-        Object.defineProperty(this, "dicomSrc", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "xhr", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        this.dicomSrc = dicomSrc;
-        this.xhr = new XMLHttpRequest();
-    }
-    load(dicomSrc) {
-        return __awaiter(this, void 0, void 0, function* () {
-            if (typeof dicomSrc === "string") {
-                const dicom = dicomSrc || this.dicomSrc;
-                if (!dicom)
-                    return;
-                return new Promise((resolve, reject) => {
-                    this.xhr.onload = () => {
-                        resolve(this.xhr.response);
-                    };
-                    this.xhr.onerror = () => {
-                        reject(this.xhr);
-                    };
-                    this.xhr.responseType = 'arraybuffer';
-                    this.xhr.open('GET', dicom, true);
-                    this.xhr.send();
-                });
-            }
-            else if (dicomSrc instanceof File) {
-                return new Promise((resolve, reject) => {
-                    dicomSrc.arrayBuffer().then((arrayBuffer) => {
-                        resolve(arrayBuffer);
-                    }).catch(reason => reject(reason));
-                });
-            }
-            return new Promise((resolve, reject) => {
-                if (false)
-                    resolve(new ArrayBuffer(1));
-                reject("dicom source is not valid");
-            });
-        });
-    }
-    cancel() {
-        this.xhr.abort();
-    }
-}
-exports.default = Loader;

package/Parser.d.ts

@@ -1,29 +0,0 @@
-import Dataset from "./Dataset";
-declare class Parser {
-    private arrayBuffer;
-    private offset;
-    private dataView;
-    private tags;
-    private dataSet;
-    private EXEPTED;
-    private VRS;
-    private IMPLICT_TRANSFER_SYNTAXES;
-    private BIG_ENDIAN_TRANSFER_SYNTAXES;
-    private DEFLATED_TRANSFER_SYNTAXES;
-    private littleEndian;
-    private implicit;
-    private transferSyntaxUID;
-    private inflated;
-    constructor(arrayBuffer: ArrayBuffer);
-    parse(): Dataset;
-    getDataset(): Dataset | undefined;
-    getNextTag(): void;
-    getValue(len: number): ArrayBuffer;
-    getNextGroupAndElement(): {
-        group: number;
-        element: number;
-    };
-    getNextVR(groupInt: number, elementInt: number): string;
-    concatArrayBuffers: (buffer1: ArrayBuffer, buffer2: ArrayBuffer) => ArrayBufferLike;
-}
-export default Parser;

package/Parser.js

@@ -1,225 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const Dataset_1 = require("./Dataset");
-const Tag_1 = require("./Tag");
-const Value_1 = require("./Value");
-const pako = require("pako");
-class Parser {
-    constructor(arrayBuffer) {
-        Object.defineProperty(this, "arrayBuffer", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "offset", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "dataView", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "tags", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: {}
-        });
-        Object.defineProperty(this, "dataSet", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: void 0
-        });
-        Object.defineProperty(this, "EXEPTED", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: ["OB", "OW", "SQ", "UN"]
-        });
-        Object.defineProperty(this, "VRS", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: ["AE", "AS", "AT", "CS", "DA", "DS", "DT", "FL", "FD", "IS", "LO", "LT", "OB", "OD", "OF", "OW", "PN", "SH", "SL", "SS", "ST", "TM", "UI", "UL", "UN", "US", "UT", "UC"]
-        });
-        Object.defineProperty(this, "IMPLICT_TRANSFER_SYNTAXES", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: ["1.2.840.10008.1.2"]
-        });
-        Object.defineProperty(this, "BIG_ENDIAN_TRANSFER_SYNTAXES", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: ["1.2.840.10008.1.2.2"]
-        });
-        Object.defineProperty(this, "DEFLATED_TRANSFER_SYNTAXES", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: ["1.2.840.10008.1.2.1.99"]
-        });
-        Object.defineProperty(this, "littleEndian", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: true
-        });
-        Object.defineProperty(this, "implicit", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: false
-        });
-        Object.defineProperty(this, "transferSyntaxUID", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: ""
-        });
-        // private UNDEFIENED_LEN:number = 0xffffffff;
-        Object.defineProperty(this, "inflated", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: false
-        });
-        Object.defineProperty(this, "concatArrayBuffers", {
-            enumerable: true,
-            configurable: true,
-            writable: true,
-            value: function (buffer1, buffer2) {
-                var tmp = new Uint8Array(buffer1.byteLength + buffer2.byteLength);
-                tmp.set(new Uint8Array(buffer1), 0);
-                tmp.set(new Uint8Array(buffer2), buffer1.byteLength);
-                return tmp.buffer;
-            }
-        });
-        this.offset = 0;
-        this.arrayBuffer = arrayBuffer;
-        this.dataView = new DataView(arrayBuffer);
-        if (this.arrayBuffer.byteLength < 132) {
-            console.error("is not valid dicom file");
-            return;
-        }
-        const prefix = Value_1.default.getString(new Uint8Array(arrayBuffer, 128, 4));
-        if (prefix !== 'DICM') {
-            console.error("is not valid dicom file");
-            return;
-        }
-        this.offset = 132;
-        this.parse();
-    }
-    parse() {
-        this.getNextTag();
-        this.dataSet = new Dataset_1.default(this.tags, this.dataView, this.littleEndian);
-        console.log(this.dataSet);
-        this.dataSet.transferSyntaxUID = this.transferSyntaxUID;
-        return this.dataSet;
-    }
-    getDataset() {
-        return this.dataSet;
-    }
-    getNextTag() {
-        if (this.offset >= this.arrayBuffer.byteLength) {
-            return;
-        }
-        const { group, element } = this.getNextGroupAndElement();
-        if (!group && !element) {
-            return;
-        }
-        if (group === 0xFFFE && (element === 0xE0DD || element === 0xE00D || element === 0xE000)) {
-            this.offset += 4;
-            return this.getNextTag();
-        }
-        if (!this.implicit && group !== 0x0002 && this.IMPLICT_TRANSFER_SYNTAXES.includes(this.transferSyntaxUID)) {
-            this.implicit = true;
-        }
-        if (this.littleEndian && group !== 0x0002 && this.BIG_ENDIAN_TRANSFER_SYNTAXES.includes(this.transferSyntaxUID)) {
-            this.littleEndian = false;
-        }
-        if (!this.inflated && group !== 0x0002 && this.DEFLATED_TRANSFER_SYNTAXES.includes(this.transferSyntaxUID)) {
-            this.offset -= 4;
-            const meta = this.dataView.buffer.slice(0, this.offset);
-            const body = this.dataView.buffer.slice(this.offset);
-            const infaltedBody = pako.inflateRaw(body);
-            this.arrayBuffer = this.concatArrayBuffers(meta, infaltedBody);
-            this.dataView = new DataView(this.arrayBuffer);
-            this.inflated = true;
-            return this.getNextTag();
-        }
-        const vr = this.getNextVR(group, element);
-        let len = 0;
-        if (this.implicit) {
-            len = this.dataView.getUint32(this.offset, this.littleEndian);
-            this.offset += 4;
-        }
-        else if (this.EXEPTED.includes(vr)) {
-            this.offset += 2; // skip 2 byte reserved
-            len = this.dataView.getUint32(this.offset, this.littleEndian);
-            this.offset += 4;
-        }
-        else if (this.VRS.includes(vr)) {
-            len = this.dataView.getUint16(this.offset, this.littleEndian);
-            this.offset += 2;
-        }
-        else if ((!vr || !vr.match(/^[A-Z]{2}$/)) && group === 0x0002 && element === 0x0000) {
-            console.log("pyz");
-            this.offset = 132;
-            this.tags = {};
-            this.implicit = true;
-            return this.getNextTag();
-        }
-        else {
-            console.log("ended", vr);
-            return;
-        }
-        if (group === 0x0002 && element === 0x0010) {
-            console.log("transfer syntax uid", this.transferSyntaxUID);
-            this.transferSyntaxUID = (Value_1.default.getString(new Uint8Array(this.arrayBuffer, this.offset, len))).replace('\0', '');
-        }
-        const tag = new Tag_1.default(group, element, vr, len, this.offset);
-        const key = tag.generateKey();
-        this.tags[key] = tag;
-        if (vr === "SQ") {
-            this.getNextTag();
-        }
-        else {
-            this.offset += len;
-            this.getNextTag();
-        }
-    }
-    getValue(len) {
-        const value = this.arrayBuffer.slice(this.offset, len);
-        this.offset += len;
-        return value;
-    }
-    getNextGroupAndElement() {
-        try {
-            const group = this.dataView.getUint16(this.offset, this.littleEndian);
-            this.offset += 2;
-            const element = this.dataView.getUint16(this.offset, this.littleEndian);
-            this.offset += 2;
-            return { group, element };
-        }
-        catch (_a) {
-            return { group: 0, element: 0 };
-        }
-    }
-    getNextVR(groupInt, elementInt) {
-        if (this.implicit) {
-            return Tag_1.default.getTagVRFromDictionary(groupInt, elementInt) || "AA";
-        }
-        const vr = Value_1.default.getString(new Uint8Array(this.arrayBuffer, this.offset, 2));
-        this.offset += 2;
-        return vr;
-    }
-}
-exports.default = Parser;

package/Tag.d.ts

@@ -1,17 +0,0 @@
-declare class Tag {
-    name: string;
-    vr: string;
-    group: number;
-    element: number;
-    value: unknown;
-    valueLength: number;
-    offset: number;
-    constructor(group: number, element: number, vr: string, valueLength: number, offset: number, value?: ArrayBuffer, name?: string | null);
-    generateKey(): string;
-    static getTagNameFromDictionary(groupInt: number, elementInt: number): string;
-    static getTagVRFromDictionary(group: number | string, element: number | string): string;
-    static intTo4digitString(int: number): string;
-    static int8digitString(int: number): string;
-    getValue(): void;
-}
-export default Tag;