@abasb75/dicom-parser 0.0.1-test → 0.0.3-test

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Files changed (7) hide show
  1. package/Dataset.d.ts +27 -3
  2. package/Dataset.js +172 -9
  3. package/Parser.js +1 -1
  4. package/Value.d.ts +7 -1
  5. package/Value.js +84 -4
  6. package/package.json +22 -15
  7. package/tsconfig.tsbuildinfo +1 -1
package/Dataset.d.ts CHANGED
@@ -1,10 +1,34 @@
1
1
  import { Tags } from "./types";
2
2
  declare class Dataset {
3
3
  tags: Tags;
4
- arrayBuffer: ArrayBuffer;
5
4
  transferSyntaxUID: string;
6
- constructor(tags: Tags, arrayBuffer: ArrayBuffer);
7
- getValue(element: number | string, elementId?: number | string, vr?: string): "" | undefined;
5
+ dataView: DataView;
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+ studyInstanceUID: string;
7
+ studyID: string;
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+ numberOfFrames: number | undefined;
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+ windowWidth: number | string | undefined;
10
+ windowCenter: number | string | undefined;
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+ seriesInstanceUID: string;
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+ seriesNumber: number | string | undefined;
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+ studyDate: string;
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+ studyTime: number | string | undefined;
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+ pixelRepresentation: number | string | undefined;
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+ littleEndian: boolean;
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+ pixeSpacing: number | number[] | string | undefined;
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+ accessionNumber: string;
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+ bitsAllocated: number | string | undefined;
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+ imageType: number | string | number[] | string[] | undefined;
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+ modality: number | string | number[] | string[] | undefined;
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+ seriesDescription: string;
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+ rows: string | number | undefined;
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+ columns: string | number | undefined;
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+ patientSex: any;
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+ patientAge: string;
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+ constructor(tags: Tags, dataView: DataView, littleEndian: boolean);
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+ int(group: number, element: number): number | undefined;
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+ get(group: number, element: number): string;
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+ string(group: number, element: number): string;
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+ getValue(element: number | string, elementId?: number | string, vr?: string): string | number | (string | number)[] | undefined;
8
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  private _getValue;
9
33
  private _reformatToString;
10
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  }
package/Dataset.js CHANGED
@@ -3,27 +3,190 @@ Object.defineProperty(exports, "__esModule", { value: true });
3
3
  const Tag_1 = require("./Tag");
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  const Value_1 = require("./Value");
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  class Dataset {
6
- constructor(tags, arrayBuffer) {
6
+ constructor(tags, dataView, littleEndian) {
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  Object.defineProperty(this, "tags", {
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8
  enumerable: true,
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  configurable: true,
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  writable: true,
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  value: void 0
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  });
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- Object.defineProperty(this, "arrayBuffer", {
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+ Object.defineProperty(this, "transferSyntaxUID", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: "1.2.840.10008.1.2"
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+ });
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+ Object.defineProperty(this, "dataView", {
14
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  enumerable: true,
15
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  configurable: true,
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  writable: true,
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  value: void 0
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24
  });
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- Object.defineProperty(this, "transferSyntaxUID", {
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+ Object.defineProperty(this, "studyInstanceUID", {
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26
  enumerable: true,
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  configurable: true,
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28
  writable: true,
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- value: "1.2.840.10008.1.2"
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+ value: ""
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+ });
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+ Object.defineProperty(this, "studyID", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: ""
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+ });
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+ Object.defineProperty(this, "numberOfFrames", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
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+ });
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+ Object.defineProperty(this, "windowWidth", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
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+ });
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+ Object.defineProperty(this, "windowCenter", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
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+ });
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+ Object.defineProperty(this, "seriesInstanceUID", {
56
+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
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+ });
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+ Object.defineProperty(this, "seriesNumber", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
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+ });
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+ Object.defineProperty(this, "studyDate", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
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+ });
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+ Object.defineProperty(this, "studyTime", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
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+ });
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+ Object.defineProperty(this, "pixelRepresentation", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
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+ });
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+ Object.defineProperty(this, "littleEndian", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
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+ });
91
+ Object.defineProperty(this, "pixeSpacing", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
96
+ });
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+ Object.defineProperty(this, "accessionNumber", {
98
+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
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+ });
103
+ Object.defineProperty(this, "bitsAllocated", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
107
+ value: void 0
108
+ });
109
+ Object.defineProperty(this, "imageType", {
110
+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
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+ });
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+ Object.defineProperty(this, "modality", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
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+ });
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+ Object.defineProperty(this, "seriesDescription", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
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+ });
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+ Object.defineProperty(this, "rows", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
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+ });
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+ Object.defineProperty(this, "columns", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
138
+ });
139
+ Object.defineProperty(this, "patientSex", {
140
+ enumerable: true,
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+ configurable: true,
142
+ writable: true,
143
+ value: void 0
144
+ });
145
+ Object.defineProperty(this, "patientAge", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: void 0
24
150
  });
25
151
  this.tags = tags;
26
- this.arrayBuffer = arrayBuffer;
152
+ this.dataView = dataView;
153
+ this.littleEndian = littleEndian;
154
+ this.studyID = this.get(0x0020, 0x0010);
155
+ this.studyInstanceUID = this.string(0x0020, 0x000D);
156
+ this.numberOfFrames = this.int(0x0028, 0x0008);
157
+ this.windowWidth = this.get(0x0028, 0x1050);
158
+ this.windowCenter = this.get(0x0028, 0x1051);
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+ this.seriesInstanceUID = this.get(0x0020, 0x000E);
160
+ this.seriesNumber = this.get(0x0020, 0x0011);
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+ this.studyDate = this.get(0x0008, 0x0020);
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+ this.studyTime = this.get(0x0008, 0x0030);
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+ this.pixelRepresentation = this.get(0x0028, 0x0103);
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+ this.pixeSpacing = this.get(0x0028, 0x0030);
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+ this.accessionNumber = this.string(0x0008, 0x0050);
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+ this.bitsAllocated = this.get(0x0028, 0x0100);
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+ this.imageType = this.get(0x0008, 0x0008);
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+ this.modality = this.get(0x0008, 0x0060);
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+ this.seriesDescription = this.string(0x0008, 0x103E);
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+ this.patientSex = this.get(0x0010, 0x0040);
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+ this.rows = this.get(0x0028, 0x0010);
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+ this.columns = this.get(0x0028, 0x0011);
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+ this.patientAge = this.get(0x0010, 0x1010);
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+ }
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+ int(group, element) {
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+ const is = this.getValue(group, element, "IS");
177
+ if (typeof is === "number") {
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+ return is;
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+ }
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+ else {
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+ return undefined;
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+ }
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+ }
184
+ get(group, element) {
185
+ const value = this.getValue(group, element);
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+ return value;
187
+ }
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+ string(group, element) {
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+ return this.getValue(group, element) + "";
27
190
  }
28
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  getValue(element, elementId, vr) {
29
192
  var _a;
@@ -47,7 +210,7 @@ class Dataset {
47
210
  else {
48
211
  _group = this._reformatToString(element);
49
212
  _element = this._reformatToString(elementId);
50
- if (!_group || _element)
213
+ if (!_group || !_element)
51
214
  return "";
52
215
  }
53
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  const key = `0x${_group}${_element}`;
@@ -62,9 +225,9 @@ class Dataset {
62
225
  if (!offset)
63
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  return "";
64
227
  const len = tag.valueLength;
65
- const value = this.arrayBuffer.slice(offset, len);
66
- const formedValue = Value_1.default.byVr(value, vr);
67
- tag.value = formedValue;
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+ const value = Value_1.default.byVr(this.dataView, offset, len, vr, this.littleEndian);
229
+ tag.value = value;
230
+ return value;
68
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  }
69
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  _reformatToString(input) {
70
233
  if (!input)
package/Parser.js CHANGED
@@ -119,7 +119,7 @@ class Parser {
119
119
  }
120
120
  parse() {
121
121
  this.getNextTag();
122
- this.dataSet = new Dataset_1.default(this.tags, this.arrayBuffer);
122
+ this.dataSet = new Dataset_1.default(this.tags, this.dataView, this.littleEndian);
123
123
  console.log(this.dataSet);
124
124
  this.dataSet.transferSyntaxUID = this.transferSyntaxUID;
125
125
  return this.dataSet;
package/Value.d.ts CHANGED
@@ -1,5 +1,11 @@
1
1
  declare class Value {
2
- static byVr(arrayBuffer: ArrayBuffer, vr: string): string;
2
+ static byVr(dataView: DataView, offset: number, len: number, vr: string, littleEndian: boolean): string | number | (string | number)[] | undefined;
3
+ static CS(dataView: DataView, offset: number, len: number): string | string[];
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+ static IS(dataView: DataView, offset: number, len: number): string | number;
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+ static DA(dataView: DataView, offset: number, len: number): string;
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+ static DS(dataView: DataView, offset: number, len: number): string | number | (string | number)[];
7
+ static TM(dataView: DataView, offset: number, len: number): string;
3
8
  static getString(bytes: Uint8Array | Int8Array | ArrayBuffer): string;
9
+ static US(dataView: DataView, offset: number, len: number, littleEndian?: boolean): number | undefined;
4
10
  }
5
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  export default Value;
package/Value.js CHANGED
@@ -1,16 +1,96 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  class Value {
4
- static byVr(arrayBuffer, vr) {
4
+ static byVr(dataView, offset, len, vr, littleEndian) {
5
5
  switch (vr) {
6
- case "UL":
6
+ case "CS":
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+ return Value.CS(dataView, offset, len);
8
+ case "US":
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+ return Value.US(dataView, offset, len, littleEndian);
10
+ case "IS":
11
+ return Value.IS(dataView, offset, len);
12
+ case "DS":
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+ return Value.DS(dataView, offset, len);
14
+ case "DA":
15
+ return Value.DA(dataView, offset, len);
16
+ case "TM":
17
+ return Value.TM(dataView, offset, len);
18
+ case "UI":
19
+ case "SH":
20
+ case "LO":
7
21
  default:
8
- return Value.getString(arrayBuffer);
22
+ return Value.getString(new Uint8Array(dataView.buffer, offset, len));
9
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  }
10
24
  }
25
+ static CS(dataView, offset, len) {
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+ let value = Value.getString(new Uint8Array(dataView.buffer, offset, len));
27
+ const values = value.split("\\");
28
+ if (values.length === 0) {
29
+ return value;
30
+ }
31
+ else if (values.length === 1) {
32
+ return values[0];
33
+ }
34
+ else {
35
+ return values;
36
+ }
37
+ }
38
+ static IS(dataView, offset, len) {
39
+ const value = Value.getString(new Uint8Array(dataView.buffer, offset, len));
40
+ if (/^[0-9]+$/.exec(value)) {
41
+ return parseInt(value);
42
+ }
43
+ return value;
44
+ }
45
+ static DA(dataView, offset, len) {
46
+ const value = Value.getString(new Uint8Array(dataView.buffer, offset, len));
47
+ if (/^[0-9]{8}$/.exec(value)) {
48
+ return `${value.slice(0, 4)}-${value.slice(4, 6)}-${value.slice(6, 8)}`;
49
+ }
50
+ return value;
51
+ }
52
+ static DS(dataView, offset, len) {
53
+ let value = Value.getString(new Uint8Array(dataView.buffer, offset, len));
54
+ const values = value.split("\\").map(v => {
55
+ if (/^[0-9]+$/.exec(v)) {
56
+ return parseInt(v);
57
+ }
58
+ else if (/^[0-9]+\.[0-9]+$/.exec(v)) {
59
+ return parseFloat(v);
60
+ }
61
+ return v;
62
+ });
63
+ if (values.length === 0) {
64
+ return value;
65
+ }
66
+ else if (values.length === 1) {
67
+ return values[0];
68
+ }
69
+ else {
70
+ return values;
71
+ }
72
+ }
73
+ static TM(dataView, offset, len) {
74
+ let value = Value.getString(new Uint8Array(dataView.buffer, offset, len)).trim().split('.')[0];
75
+ if (![2, 4, 6].includes(value.length)) {
76
+ return value;
77
+ }
78
+ if (value.length === 4) {
79
+ value += "00";
80
+ }
81
+ else if (value.length === 2) {
82
+ value += "0000";
83
+ }
84
+ return `${value.slice(0, 2)}:${value.slice(2, 4)}:${value.slice(4, 6)}`;
85
+ }
11
86
  static getString(bytes) {
12
87
  const decoder = new TextDecoder();
13
- return decoder.decode(bytes);
88
+ return decoder.decode(bytes).trim();
89
+ }
90
+ static US(dataView, offset, len, littleEndian = true) {
91
+ if (len === 2) {
92
+ return dataView.getUint16(offset, littleEndian);
93
+ }
14
94
  }
15
95
  }
16
96
  exports.default = Value;
package/package.json CHANGED
@@ -1,27 +1,34 @@
1
1
  {
2
2
  "name": "@abasb75/dicom-parser",
3
- "version": "0.0.1-test",
4
- "description": "a powerfull dicom parser",
3
+ "version": "0.0.3-test",
4
+ "description": "a javascript powerfull dicom parser",
5
5
  "main": "index.js",
6
6
  "type": "module",
7
7
  "types": "index.d.ts",
8
8
  "keywords": [
9
- "dicom",
10
- "dcm",
11
- "dcmjs",
12
- "dicom-parser",
13
- "pacs"
9
+ "dicom",
10
+ "dcm",
11
+ "dcmjs",
12
+ "dicom-parser",
13
+ "pacs"
14
14
  ],
15
15
  "author": "Abbas Bagheri <abasbagheria@gmail.com>",
16
16
  "license": "ISC",
17
17
  "repository": {
18
- "type": "git",
19
- "url": "git+https://github.com/abasb75/dicom-parser/raction.git"
18
+ "type": "git",
19
+ "url": "git+https://github.com/abasb75/dicom-parser/raction.git"
20
20
  },
21
- "bugs": {
22
- "url": "https://github.com/abasb75/dicom-parser/issues"
21
+ "bugs": {
22
+ "url": "https://github.com/abasb75/dicom-parser/issues"
23
23
  },
24
- "homepage": "https://github.com/abasb75/dicom-parser#readme"
25
-
26
- }
27
-
24
+ "homepage": "https://github.com/abasb75/dicom-parser#readme",
25
+ "dependencies": {
26
+ "pako": "^2.1.0"
27
+ },
28
+ "peerDependencies": {
29
+ "pako": "^2.1.0"
30
+ },
31
+ "devDependencies": {
32
+ "pako": "^2.1.0"
33
+ }
34
+ }
package/tsconfig.tsbuildinfo CHANGED
@@ -1 +1 @@
1
- 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