@abasb75/dicom-parser 0.0.0-test20a → 0.0.0-test22

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Files changed (6) hide show
  1. package/Dataset.d.ts +6 -12
  2. package/Dataset.js +65 -5
  3. package/package.json +2 -2
  4. package/tsconfig.tsbuildinfo +1 -0
  5. package/types.d.ts +4 -2
  6. package/utils/PaletteColor.js +13 -17
package/Dataset.d.ts CHANGED
@@ -33,22 +33,16 @@ declare class Dataset {
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  getPatientModule(): DicomPatientModule;
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  getPixelModule(): DicomPixelModule;
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  getScalingModule(): DicomScalingModule;
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- date(group: number, element: number): string | {
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- year: string;
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- month: string;
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- day: string;
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- };
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- time(group: number, element: number): string | {
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- hour: string;
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- minute: string;
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- second: string;
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- };
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+ date(group: number, element: number): any;
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+ time(group: number, element: number): any;
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  int(group: number, element: number): number | undefined;
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- get(group: number, element: number): string;
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+ get(group: number, element: number): any;
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  string(group: number, element: number): string;
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- getValue(element: number | string, elementId?: number | string, vr?: string): string | number | DataView | (string | number)[] | undefined;
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+ getValue(element: number | string, elementId?: number | string, vr?: string): {} | undefined;
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  getPaletteColorData(): import("./types").PaletteColorData | undefined;
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+ private _findTagsByKey;
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  private _getValue;
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+ private _getSqValues;
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  private _reformatToString;
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  }
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  export default Dataset;
package/Dataset.js CHANGED
@@ -273,11 +273,13 @@ var Dataset = /** @class */ (function () {
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  configurable: true,
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  writable: true,
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  value: function () {
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+ var pixelMeasuresSequence = this.get(0x0028, 0x9110);
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  return {
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+ pixelMeasuresSequence: pixelMeasuresSequence,
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  photometricInterpretation: this.get(0x0028, 0x0004),
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  numberOfFrames: this.int(0x0028, 0x0008),
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  pixelRepresentation: this.int(0x0028, 0x0103),
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- pixeSpacing: this.get(0x0028, 0x0030),
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+ pixelSpacing: this.get(0x0028, 0x0030),
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  rows: this.int(0x0028, 0x0010),
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  columns: this.int(0x0028, 0x0011),
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  bitsAllocated: this.int(0x0028, 0x0100),
@@ -390,7 +392,6 @@ var Dataset = /** @class */ (function () {
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  configurable: true,
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  writable: true,
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  value: function (element, elementId, vr) {
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- var _a;
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  if (!element && !elementId) {
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  return "";
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  }
@@ -415,11 +416,15 @@ var Dataset = /** @class */ (function () {
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  return "";
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  }
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  var key = "0x".concat(_group).concat(_element);
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- if (!this.tags[key]) {
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+ var tag = this._findTagsByKey(key, this.tags);
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+ if (!tag) {
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  return "";
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  }
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- var _vr = vr || ((_a = this.tags[key]) === null || _a === void 0 ? void 0 : _a.vr) || Tag.getTagVRFromDictionary(_group, _element) || "AA";
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- return this._getValue(this.tags[key], _vr);
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+ var _vr = vr || (tag === null || tag === void 0 ? void 0 : tag.vr) || Tag.getTagVRFromDictionary(_group, _element) || "AA";
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+ if (_vr === "SQ") {
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+ return this._getSqValues(key);
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+ }
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+ return this._getValue(tag, _vr);
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  }
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  });
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  Object.defineProperty(Dataset.prototype, "getPaletteColorData", {
@@ -430,6 +435,30 @@ var Dataset = /** @class */ (function () {
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  return PaletteColor.get(this);
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  }
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  });
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+ Object.defineProperty(Dataset.prototype, "_findTagsByKey", {
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+ enumerable: false,
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+ configurable: true,
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+ writable: true,
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+ value: function (key, tags) {
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+ if (tags[key]) {
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+ return tags[key];
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+ }
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+ var keys = Object.keys(tags);
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+ var sqs = [];
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+ keys.forEach(function (key) {
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+ if (tags[key].vr === 'SQ' && typeof tags[key].value === "object") {
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+ sqs.push(tags[key].value);
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+ }
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+ });
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+ for (var i = 0; i < sqs.length; i++) {
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+ var finded = this._findTagsByKey(key, sqs[i]);
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+ if (finded) {
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+ return finded;
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+ }
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+ }
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+ return null;
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+ }
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+ });
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  Object.defineProperty(Dataset.prototype, "_getValue", {
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  enumerable: false,
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  configurable: true,
@@ -445,6 +474,37 @@ var Dataset = /** @class */ (function () {
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  return value;
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  }
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  });
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+ Object.defineProperty(Dataset.prototype, "_getSqValues", {
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+ enumerable: false,
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+ configurable: true,
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+ writable: true,
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+ value: function (key) {
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+ var _this = this;
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+ var _a;
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+ var sqValues = {};
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+ var values = (_a = this.tags[key]) === null || _a === void 0 ? void 0 : _a.value;
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+ if (!values)
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+ return {};
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+ var keys = Object.keys(values);
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+ if (!keys || !Array.isArray(keys) || keys.length < 1) {
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+ return {};
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+ }
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+ keys.forEach(function (key) {
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+ var _a, _b, _c, _d;
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+ //@ts-ignore
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+ if (typeof values[key] === "object") {
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+ var name_1 = (_a = (values[key])) === null || _a === void 0 ? void 0 : _a.name;
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+ if (typeof name_1 === "string" && name_1.length > 0) {
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+ var offset = (_b = (values[key])) === null || _b === void 0 ? void 0 : _b.offset;
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+ var vr = (_c = (values[key])) === null || _c === void 0 ? void 0 : _c.vr;
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+ var len = (_d = (values[key])) === null || _d === void 0 ? void 0 : _d.valueLength;
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+ //@ts-ignore
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+ sqValues[name_1] = Value.byVr(_this.dataView, offset, len, vr, _this.littleEndian);
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+ }
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+ }
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+ });
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+ }
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+ });
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  Object.defineProperty(Dataset.prototype, "_reformatToString", {
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  enumerable: false,
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  configurable: true,
package/package.json CHANGED
@@ -1,7 +1,7 @@
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  {
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  "name": "@abasb75/dicom-parser",
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- "version": "0.0.0-test20a",
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- "description": "a javascript powerfull dicom parser",
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+ "version": "0.0.0-test22",
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+ "description": "a powerfull javascript dicom parser",
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  "main": "index.js",
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  "type": "module",
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  "types": "index.d.ts",
package/tsconfig.tsbuildinfo ADDED
@@ -0,0 +1 @@
1
+ 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package/types.d.ts CHANGED
@@ -43,7 +43,7 @@ interface DicomPixelModule {
43
43
  photometricInterpretation: string;
44
44
  numberOfFrames: number | undefined;
45
45
  pixelRepresentation: number | undefined;
46
- pixeSpacing: any | undefined;
46
+ pixelSpacing: any | undefined;
47
47
  rows: number | number | undefined;
48
48
  columns: number | number | undefined;
49
49
  bitsAllocated: number | undefined;
@@ -68,6 +68,7 @@ interface DicomPixelModule {
68
68
  segmentedGreenPaletteColorLookupTableData: any;
69
69
  segmentedBluePaletteColorLookupTableData: any;
70
70
  segmentedAlphaPaletteColorLookupTableData: any;
71
+ pixelMeasuresSequence: any;
71
72
  }
72
73
  interface DicomScalingModule {
73
74
  rescaleSlope: number | undefined;
@@ -82,10 +83,11 @@ interface PixelDataDecodeOptions {
82
83
  dataset?: Dataset;
83
84
  }
84
85
  interface PaletteColorDataColor {
85
- data: number[];
86
+ data: Uint8Array[] | Uint16Array[];
86
87
  firstInputValueMapped: number;
87
88
  lutEntries: number;
88
89
  bitsPerEntry: number;
90
+ littleEndian: boolean;
89
91
  }
90
92
  interface PaletteColorData {
91
93
  red: PaletteColorDataColor | undefined;
package/utils/PaletteColor.js CHANGED
@@ -11,10 +11,10 @@ var PaletteColor = /** @class */ (function () {
11
11
  return undefined;
12
12
  }
13
13
  var littleEndian = dataset.littleEndian;
14
- var red = PaletteColor.getData(redPaletteColorLookupTableDescriptor, redPaletteColorLookupTableData, segmentedRedPaletteColorLookupTableData, bitsAllocated, littleEndian);
15
- var green = PaletteColor.getData(greenPaletteColorLookupTableDescriptor, greenPaletteColorLookupTableData, segmentedGreenPaletteColorLookupTableData, bitsAllocated, littleEndian);
16
- var blue = PaletteColor.getData(bluePaletteColorLookupTableDescriptor, bluePaletteColorLookupTableData, segmentedBluePaletteColorLookupTableData, bitsAllocated, littleEndian);
17
- var alpha = PaletteColor.getData(alphaPaletteColorLookupTableDescriptor, alphaPaletteColorLookupTableData, segmentedAlphaPaletteColorLookupTableData, bitsAllocated, littleEndian);
14
+ var red = PaletteColor.getData(redPaletteColorLookupTableDescriptor, redPaletteColorLookupTableData, segmentedRedPaletteColorLookupTableData, littleEndian);
15
+ var green = PaletteColor.getData(greenPaletteColorLookupTableDescriptor, greenPaletteColorLookupTableData, segmentedGreenPaletteColorLookupTableData, littleEndian);
16
+ var blue = PaletteColor.getData(bluePaletteColorLookupTableDescriptor, bluePaletteColorLookupTableData, segmentedBluePaletteColorLookupTableData, littleEndian);
17
+ var alpha = PaletteColor.getData(alphaPaletteColorLookupTableDescriptor, alphaPaletteColorLookupTableData, segmentedAlphaPaletteColorLookupTableData, littleEndian);
18
18
  return {
19
19
  red: red,
20
20
  green: green,
@@ -27,7 +27,7 @@ var PaletteColor = /** @class */ (function () {
27
27
  enumerable: false,
28
28
  configurable: true,
29
29
  writable: true,
30
- value: function (descriptor, paletteData, segmentedPaletteData, bitsAllocated, littleEndian) {
30
+ value: function (descriptor, paletteData, segmentedPaletteData, littleEndian) {
31
31
  var _a;
32
32
  if (!Array.isArray(descriptor)
33
33
  || descriptor.length < 3) {
@@ -42,12 +42,12 @@ var PaletteColor = /** @class */ (function () {
42
42
  }
43
43
  if (paletteData) {
44
44
  tableDataArray = bitsPerEntry === 16
45
- ? PaletteColor.get16Array(paletteData, bitsAllocated, littleEndian)
45
+ ? PaletteColor.get16Array(paletteData, littleEndian)
46
46
  : PaletteColor.get8Array(paletteData);
47
47
  }
48
48
  else if (segmentedPaletteData) {
49
49
  var segmentedTableDataArray = bitsPerEntry === 16
50
- ? PaletteColor.get16Array(segmentedPaletteData, bitsAllocated, littleEndian)
50
+ ? PaletteColor.get16Array(segmentedPaletteData, littleEndian)
51
51
  : PaletteColor.get8Array(segmentedPaletteData);
52
52
  tableDataArray = (_a = PaletteColor.segmentedDataToData(segmentedTableDataArray, lutEntries)) === null || _a === void 0 ? void 0 : _a.tableData;
53
53
  }
@@ -58,7 +58,8 @@ var PaletteColor = /** @class */ (function () {
58
58
  data: tableDataArray,
59
59
  firstInputValueMapped: firstInputValueMapped,
60
60
  lutEntries: lutEntries,
61
- bitsPerEntry: bitsPerEntry
61
+ bitsPerEntry: bitsPerEntry,
62
+ littleEndian: littleEndian,
62
63
  };
63
64
  }
64
65
  });
@@ -66,15 +67,10 @@ var PaletteColor = /** @class */ (function () {
66
67
  enumerable: false,
67
68
  configurable: true,
68
69
  writable: true,
69
- value: function (paletteData, bitsAllocated, littleEndian) {
70
+ value: function (paletteData, littleEndian) {
70
71
  var array = [];
71
72
  for (var i = 0; i < paletteData.byteLength; i += 2) {
72
- if (bitsAllocated === 8) {
73
- array.push(paletteData.getUint16(i, littleEndian) >> 8);
74
- }
75
- else {
76
- array.push(paletteData.getUint16(i, littleEndian));
77
- }
73
+ array.push(paletteData.getUint16(i, littleEndian));
78
74
  }
79
75
  return array;
80
76
  }
@@ -116,7 +112,7 @@ var PaletteColor = /** @class */ (function () {
116
112
  segmentedDataOffset++;
117
113
  tableDataOffset++;
118
114
  }
119
- lastValue = tableData[segmentedDataOffset - 1] & 0xFFFF;
115
+ lastValue = tableData[segmentedDataOffset - 1] & 0xffff;
120
116
  break;
121
117
  case 1:
122
118
  if (typeof lastValue !== "number") {
@@ -128,7 +124,7 @@ var PaletteColor = /** @class */ (function () {
128
124
  tableData[tableDataOffset] = (lastValue + ((newValue - lastValue) / len));
129
125
  tableDataOffset++;
130
126
  }
131
- lastValue = newValue & 0xFFFF;
127
+ lastValue = newValue & 0xffff;
132
128
  break;
133
129
  case 2: // untested
134
130
  if (typeof lastValue !== "number") {