@abasb75/dicom-parser 0.0.0-test20 → 0.0.0-test20a

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Files changed (9) hide show
  1. package/Dataset.d.ts +3 -0
  2. package/Dataset.js +27 -0
  3. package/Parser.d.ts +1 -0
  4. package/Parser.js +27 -7
  5. package/Value.js +0 -1
  6. package/package.json +1 -1
  7. package/utils/PixelData.d.ts +1 -0
  8. package/utils/PixelData.js +25 -5
  9. package/tsconfig.tsbuildinfo +0 -1
package/Dataset.d.ts CHANGED
@@ -1,5 +1,7 @@
1
1
  import { DicomDate, DicomPatientModule, DicomPixelModule, DicomScalingModule, DicomTime, DicomVOILutModule, Tags } from "./types";
2
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  declare class Dataset {
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+ static Float: string;
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+ static Integer: string;
3
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  /** duration of parse */
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  start: number;
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  end: number | undefined;
@@ -25,6 +27,7 @@ declare class Dataset {
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  scalingModule: DicomScalingModule;
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  constructor(tags: Tags, dataView: DataView, littleEndian: boolean, start: number, end: number);
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  hasPixelData(): boolean;
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+ getPixelTypes(): string | null;
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  getPixelData(frame?: number): Promise<DataView>;
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  getVOILutModule(): DicomVOILutModule;
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  getPatientModule(): DicomPatientModule;
package/Dataset.js CHANGED
@@ -201,6 +201,21 @@ var Dataset = /** @class */ (function () {
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  return false;
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  }
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  });
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+ Object.defineProperty(Dataset.prototype, "getPixelTypes", {
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+ enumerable: false,
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+ configurable: true,
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+ writable: true,
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+ value: function () {
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+ if (this.tags['0x7FE00008']
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+ || this.tags['0x7FE00009']) {
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+ return Dataset.Float;
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+ }
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+ else if (this.tags['0x7FE00010']) {
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+ return Dataset.Integer;
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+ }
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+ return null;
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+ }
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+ });
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  Object.defineProperty(Dataset.prototype, "getPixelData", {
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  enumerable: false,
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  configurable: true,
@@ -443,6 +458,18 @@ var Dataset = /** @class */ (function () {
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  return Tag.intTo4digitString(input);
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  }
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  });
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+ Object.defineProperty(Dataset, "Float", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: "Float"
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+ });
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+ Object.defineProperty(Dataset, "Integer", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: "Integer"
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+ });
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  return Dataset;
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  }());
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  export default Dataset;
package/Parser.d.ts CHANGED
@@ -5,6 +5,7 @@ declare class Parser {
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  private end;
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  private arrayBuffer;
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  private offset;
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+ private startOfset;
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  private dataView;
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  private tags;
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  private dataSet;
package/Parser.js CHANGED
@@ -28,6 +28,12 @@ var Parser = /** @class */ (function () {
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  writable: true,
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  value: void 0
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  });
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+ Object.defineProperty(this, "startOfset", {
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+ enumerable: true,
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+ configurable: true,
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+ writable: true,
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+ value: 132
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+ });
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  Object.defineProperty(this, "dataView", {
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  enumerable: true,
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  configurable: true,
@@ -124,12 +130,11 @@ var Parser = /** @class */ (function () {
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  this.offset = 132;
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  }
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  else {
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- // in some image (128 empty byte and DICM) does not exist.
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- // const {group} = this.getNextGroupAndElement();
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- // if(group!==0x0002){
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- // return;
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- // }
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  this.offset = 0;
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+ while (Value.getString(this.dataView.buffer.slice(this.offset, this.offset + 1)) === "") {
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+ this.offset++;
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+ }
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+ this.startOfset = this.offset;
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  }
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  this.parse();
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  }
@@ -177,7 +182,8 @@ var Parser = /** @class */ (function () {
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  if (!this.implicit && group !== 0x0002 && this.IMPLICT_TRANSFER_SYNTAXES.includes(this.transferSyntaxUID)) {
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  this.implicit = true;
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  }
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- if (this.littleEndian && group !== 0x0002 && this.BIG_ENDIAN_TRANSFER_SYNTAXES.includes(this.transferSyntaxUID)) {
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+ if (this.littleEndian && group !== 0x0002
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+ && this.BIG_ENDIAN_TRANSFER_SYNTAXES.includes(this.transferSyntaxUID)) {
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  this.littleEndian = false;
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  }
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  if (!this.inflated && group !== 0x0002 && this.DEFLATED_TRANSFER_SYNTAXES.includes(this.transferSyntaxUID)) {
@@ -206,7 +212,7 @@ var Parser = /** @class */ (function () {
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  this.offset += 2;
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  }
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  else if ((!vr || !vr.match(/^[A-Z]{2}$/)) && group === 0x0002 && element === 0x0000) {
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- this.offset = 132;
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+ this.offset = this.startOfset;
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  this.tags = {};
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  this.implicit = true;
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  continue;
@@ -219,6 +225,20 @@ var Parser = /** @class */ (function () {
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  if (group === 0x0002 && element === 0x0010) {
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  this.transferSyntaxUID = (Value.getString(new Uint8Array(this.arrayBuffer, this.offset, len))).replace('\0', '');
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  }
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+ // find dataset thats may be as big endian dicom.
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+ // if(
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+ // this.littleEndian
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+ // && Object.keys(tags)?.length===0
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+ // && len > this.dataView.byteLength
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+ // ){
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+ // console.log({group,element,len,vr});
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+ // this.littleEndian =false;
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+ // this.offset = this.startOfset;
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+ // return this.getElements();
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+ // }else{
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+ // console.log({group,element,len,vr});
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+ // return tags;
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+ // }
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  var tag = new Tag(group, element, vr, len, this.offset);
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  if (len === 0xFFFFFFFF && group === 0x7FE0 && element === 0x0010) {
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  var _b = this.getNextGroupAndElement(), group_1 = _b.group, element_1 = _b.element;
package/Value.js CHANGED
@@ -132,7 +132,6 @@ var Value = /** @class */ (function () {
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  if (littleEndian === void 0) { littleEndian = true; }
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  if (len === 2) {
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  var value = dataView.getUint16(offset, littleEndian);
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- console.log({ littleEndian: littleEndian, value: value, v: dataView.getUint16(offset + 2, littleEndian) });
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  return value;
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  }
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  else if (len > 2) {
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
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  "name": "@abasb75/dicom-parser",
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- "version": "0.0.0-test20",
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+ "version": "0.0.0-test20a",
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  "description": "a javascript powerfull dicom parser",
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  "main": "index.js",
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  "type": "module",
package/utils/PixelData.d.ts CHANGED
@@ -9,5 +9,6 @@ declare class PixelData {
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  private static _isJPEG;
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  private static _isJPEG2000;
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  private static _makeFragments;
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+ private static bitToByte;
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  }
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  export default PixelData;
package/utils/PixelData.js CHANGED
@@ -57,6 +57,7 @@ var PixelData = /** @class */ (function () {
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  configurable: true,
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  writable: true,
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  value: function (dataset, frameIndex) {
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+ var _a;
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  var pixelDataElement = dataset.tags['0x7FE00010'] || dataset.tags['0x7FE00008'] || dataset.tags['0x7FE00009'];
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  if (!pixelDataElement) {
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  throw new Error("dicom has not pixels");
@@ -66,7 +67,19 @@ var PixelData = /** @class */ (function () {
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  return PixelData._encapsulatePixelDatas(dataset, pixelDataElement, frameIndex);
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  }
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  else {
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- var frameLen = pixelDataElement.valueLength / numberOfFrames;
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+ var _b = dataset === null || dataset === void 0 ? void 0 : dataset.pixelModule, columns = _b.columns, rows = _b.rows, samplesPerPixel = _b.samplesPerPixel, bitsAllocated = _b.bitsAllocated;
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+ var frameLen = 0;
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+ if ((_a = dataset.pixelModule) === null || _a === void 0 ? void 0 : _a.numberOfFrames) {
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+ frameLen = pixelDataElement.valueLength / numberOfFrames;
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+ }
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+ else if (columns && rows && samplesPerPixel && bitsAllocated) {
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+ var bytesAllocated = PixelData.bitToByte(bitsAllocated);
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+ frameLen = rows * columns * bytesAllocated * samplesPerPixel;
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+ }
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+ else {
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+ frameLen = pixelDataElement.valueLength / numberOfFrames;
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+ }
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+ frameLen = Math.min(frameLen, pixelDataElement.valueLength);
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  var offset = pixelDataElement.offset + (frameLen * frameIndex);
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  return new DataView(dataset.dataView.buffer.slice(offset, offset + frameLen));
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  }
@@ -179,7 +192,6 @@ var PixelData = /** @class */ (function () {
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  if (PixelData._isJPEG(fragment.offset + 8, dataset.dataView)
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  || PixelData._isJPEG2000(fragment.offset + 8, dataset.dataView)) {
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  basicOffsetTable.push(fragment.offset);
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- console.log('magics is jpeg/jpeg2000');
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  }
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  }
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  return basicOffsetTable;
@@ -204,10 +216,8 @@ var PixelData = /** @class */ (function () {
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  writable: true,
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  value: function (position, dataView) {
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  var magics2 = [0xFF, 0x4F, 0xFF, 0x51];
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- console.log('magics2', magics2);
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  for (var i = 0; i < magics2.length; i++) {
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  var finded = dataView.getUint8(position + i);
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- console.log(finded);
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  if (finded !== magics2[i]) {
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  break;
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  }
@@ -237,7 +247,6 @@ var PixelData = /** @class */ (function () {
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  var offset = basicOffsetIndex;
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  var dataView = dataset.dataView;
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  while (true) {
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- console.log(offset, dataView.byteLength);
241
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  if (offset >= dataView.byteLength) {
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  break;
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  }
@@ -260,6 +269,17 @@ var PixelData = /** @class */ (function () {
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  return fragments;
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  }
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  });
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+ Object.defineProperty(PixelData, "bitToByte", {
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+ enumerable: false,
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+ configurable: true,
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+ writable: true,
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+ value: function (bit) {
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+ if (bit <= 8) {
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+ return bit / 8;
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+ }
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+ return Math.ceil(bit / 8);
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+ }
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+ });
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  return PixelData;
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  }());
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  export default PixelData;
package/tsconfig.tsbuildinfo DELETED
@@ -1 +0,0 @@
1
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