@abasb75/dicom-parser 0.0.0-test1 → 0.0.0-test3

package/Parser.js

@@ -0,0 +1,282 @@
+import Dataset from "./Dataset";
+import Tag from "./Tag";
+import Value from "./Value";
+import * as pako from "pako";
+var Parser = /** @class */ (function () {
+    function Parser(arrayBuffer) {
+        Object.defineProperty(this, "start", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: void 0
+        });
+        Object.defineProperty(this, "end", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: void 0
+        });
+        Object.defineProperty(this, "arrayBuffer", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: void 0
+        });
+        Object.defineProperty(this, "offset", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: void 0
+        });
+        Object.defineProperty(this, "dataView", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: void 0
+        });
+        Object.defineProperty(this, "tags", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: {}
+        });
+        Object.defineProperty(this, "dataSet", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: void 0
+        });
+        Object.defineProperty(this, "EXEPTED", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: ["OB", "OW", "SQ", "UN", "UT", "OF", "UC"]
+        });
+        Object.defineProperty(this, "VRS", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: ["AE", "AS", "AT", "CS", "DA", "DS", "DT", "FL", "FD", "IS", "LO", "LT", "OB", "OD", "OF", "OW", "PN", "SH", "SL", "SS", "ST", "TM", "UI", "UL", "UN", "US", "UT", "UC"]
+        });
+        Object.defineProperty(this, "IMPLICT_TRANSFER_SYNTAXES", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: ["1.2.840.10008.1.2"]
+        });
+        Object.defineProperty(this, "BIG_ENDIAN_TRANSFER_SYNTAXES", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: ["1.2.840.10008.1.2.2"]
+        });
+        Object.defineProperty(this, "DEFLATED_TRANSFER_SYNTAXES", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: ["1.2.840.10008.1.2.1.99"]
+        });
+        Object.defineProperty(this, "littleEndian", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: true
+        });
+        Object.defineProperty(this, "implicit", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: false
+        });
+        Object.defineProperty(this, "transferSyntaxUID", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: ""
+        });
+        // private UNDEFIENED_LEN:number = 0xffffffff;
+        Object.defineProperty(this, "inflated", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: false
+        });
+        Object.defineProperty(this, "concatArrayBuffers", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: function (buffer1, buffer2) {
+                var tmp = new Uint8Array(buffer1.byteLength + buffer2.byteLength);
+                tmp.set(new Uint8Array(buffer1), 0);
+                tmp.set(new Uint8Array(buffer2), buffer1.byteLength);
+                return tmp.buffer;
+            }
+        });
+        this.start = Date.now();
+        this.offset = 0;
+        this.arrayBuffer = arrayBuffer;
+        this.dataView = new DataView(arrayBuffer);
+        if (this.arrayBuffer.byteLength < 132) {
+            return;
+        }
+        var prefix = Value.getString(new Uint8Array(arrayBuffer, 128, 4));
+        if (prefix !== 'DICM') {
+            return;
+        }
+        this.offset = 132;
+        this.parse();
+    }
+    Object.defineProperty(Parser.prototype, "parse", {
+        enumerable: false,
+        configurable: true,
+        writable: true,
+        value: function () {
+            this.getNextElement();
+            this.end = Date.now();
+            this.dataSet = new Dataset(this.tags, this.dataView, this.littleEndian, this.start, this.end);
+            this.dataSet.transferSyntaxUID = this.transferSyntaxUID;
+            return this.dataSet;
+        }
+    });
+    Object.defineProperty(Parser.prototype, "getDataset", {
+        enumerable: false,
+        configurable: true,
+        writable: true,
+        value: function () {
+            return this.dataSet;
+        }
+    });
+    Object.defineProperty(Parser.prototype, "getNextElement", {
+        enumerable: false,
+        configurable: true,
+        writable: true,
+        value: function () {
+            if (this.offset >= this.arrayBuffer.byteLength) {
+                return;
+            }
+            var _a = this.getNextGroupAndElement(), group = _a.group, element = _a.element;
+            if (!group && !element) {
+                return;
+            }
+            if (group === 0xFFFE && (element === 0xE0DD || element === 0xE00D || element === 0xE000)) {
+                this.offset += 4;
+                return this.getNextElement();
+            }
+            if (!this.implicit && group !== 0x0002 && this.IMPLICT_TRANSFER_SYNTAXES.includes(this.transferSyntaxUID)) {
+                this.implicit = true;
+            }
+            if (this.littleEndian && group !== 0x0002 && this.BIG_ENDIAN_TRANSFER_SYNTAXES.includes(this.transferSyntaxUID)) {
+                this.littleEndian = false;
+            }
+            if (!this.inflated && group !== 0x0002 && this.DEFLATED_TRANSFER_SYNTAXES.includes(this.transferSyntaxUID)) {
+                this.offset -= 4;
+                var meta = this.dataView.buffer.slice(0, this.offset);
+                var body = this.dataView.buffer.slice(this.offset);
+                var infaltedBody = pako.inflateRaw(body);
+                this.arrayBuffer = this.concatArrayBuffers(meta, infaltedBody);
+                this.dataView = new DataView(this.arrayBuffer);
+                this.inflated = true;
+                return this.getNextElement();
+            }
+            var vr = this.getNextVR(group, element);
+            var len = 0;
+            if (this.implicit) {
+                len = this.dataView.getUint32(this.offset, this.littleEndian);
+                this.offset += 4;
+            }
+            else if (this.EXEPTED.includes(vr)) {
+                this.offset += 2; // skip 2 byte reserved
+                len = this.dataView.getUint32(this.offset, this.littleEndian);
+                this.offset += 4;
+            }
+            else if (this.VRS.includes(vr)) {
+                len = this.dataView.getUint16(this.offset, this.littleEndian);
+                this.offset += 2;
+            }
+            else if ((!vr || !vr.match(/^[A-Z]{2}$/)) && group === 0x0002 && element === 0x0000) {
+                this.offset = 132;
+                this.tags = {};
+                this.implicit = true;
+                return this.getNextElement();
+            }
+            else {
+                return;
+            }
+            if (group === 0x0002 && element === 0x0010) {
+                this.transferSyntaxUID = (Value.getString(new Uint8Array(this.arrayBuffer, this.offset, len))).replace('\0', '');
+            }
+            var tag = new Tag(group, element, vr, len, this.offset);
+            var key = tag.generateKey();
+            this.tags[key] = tag;
+            if (len === 0xFFFFFFFF && group === 0x7FE0 && element === 0x0010) {
+                var _b = this.getNextGroupAndElement(), group_1 = _b.group, element_1 = _b.element;
+                while (true) {
+                    if (group_1 === 0xFFFE && element_1 === 0xE000) {
+                        var len_1 = this.dataView.getUint32(this.offset, this.littleEndian);
+                        this.offset += 4;
+                        var t = this.getNextGroupAndElement();
+                        group_1 = t.group;
+                        element_1 = t.element;
+                        this.offset += len_1;
+                    }
+                    else {
+                        break;
+                    }
+                }
+                this.offset -= 4;
+            }
+            if (vr === "SQ") {
+                this.getNextElement();
+            }
+            else {
+                this.offset += len;
+                this.getNextElement();
+            }
+        }
+    });
+    Object.defineProperty(Parser.prototype, "getValue", {
+        enumerable: false,
+        configurable: true,
+        writable: true,
+        value: function (len) {
+            var value = this.arrayBuffer.slice(this.offset, len);
+            this.offset += len;
+            return value;
+        }
+    });
+    Object.defineProperty(Parser.prototype, "getNextGroupAndElement", {
+        enumerable: false,
+        configurable: true,
+        writable: true,
+        value: function () {
+            try {
+                var group = this.dataView.getUint16(this.offset, this.littleEndian);
+                this.offset += 2;
+                var element = this.dataView.getUint16(this.offset, this.littleEndian);
+                this.offset += 2;
+                return { group: group, element: element };
+            }
+            catch (_a) {
+                return { group: 0, element: 0 };
+            }
+        }
+    });
+    Object.defineProperty(Parser.prototype, "getNextVR", {
+        enumerable: false,
+        configurable: true,
+        writable: true,
+        value: function (groupInt, elementInt) {
+            if (this.offset >= this.dataView.byteLength) {
+                return "";
+            }
+            if (this.implicit) {
+                return Tag.getTagVRFromDictionary(groupInt, elementInt) || "AA";
+            }
+            var vr = Value.getString(new Uint8Array(this.arrayBuffer, this.offset, 2));
+            this.offset += 2;
+            return vr;
+        }
+    });
+    return Parser;
+}());
+export default Parser;

package/PixelData.d.ts

@@ -0,0 +1,7 @@
+import Dataset from "./Dataset";
+declare class PixelData {
+    static getAll(dataset: Dataset): Promise<DataView[]>;
+    static get(dataset: Dataset, frame?: number): Promise<DataView>;
+    private static _getixelDataViews;
+}
+export default PixelData;

package/PixelData.js

@@ -0,0 +1,124 @@
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g = Object.create((typeof Iterator === "function" ? Iterator : Object).prototype);
+    return g.next = verb(0), g["throw"] = verb(1), g["return"] = verb(2), typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (g && (g = 0, op[0] && (_ = 0)), _) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
+            }
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+import Tag from "./Tag";
+var PixelData = /** @class */ (function () {
+    function PixelData() {
+    }
+    Object.defineProperty(PixelData, "getAll", {
+        enumerable: false,
+        configurable: true,
+        writable: true,
+        value: function (dataset) {
+            return __awaiter(this, void 0, void 0, function () {
+                return __generator(this, function (_a) {
+                    return [2 /*return*/, PixelData._getixelDataViews(dataset)];
+                });
+            });
+        }
+    });
+    Object.defineProperty(PixelData, "get", {
+        enumerable: false,
+        configurable: true,
+        writable: true,
+        value: function (dataset_1) {
+            return __awaiter(this, arguments, void 0, function (dataset, frame) {
+                var pixelDatas;
+                if (frame === void 0) { frame = 0; }
+                return __generator(this, function (_a) {
+                    pixelDatas = PixelData._getixelDataViews(dataset);
+                    if (frame > pixelDatas.length) {
+                        throw new Error("Frame ".concat(frame, " not found."));
+                    }
+                    return [2 /*return*/, pixelDatas[frame]];
+                });
+            });
+        }
+    });
+    Object.defineProperty(PixelData, "_getixelDataViews", {
+        enumerable: false,
+        configurable: true,
+        writable: true,
+        value: function (dataset) {
+            var pixelData = dataset.tags['0x7FE00010'] || dataset.tags['0x7FE00008'] || dataset.tags['0x7FE00009'];
+            var pixelDatas = [];
+            var numberOfFrames = dataset.pixelModule.numberOfFrames || 1;
+            if (pixelData.valueLength === 0xFFFFFFFF) {
+                var offset = pixelData.offset;
+                while (true) {
+                    if (offset >= dataset.dataView.byteLength) {
+                        break;
+                    }
+                    var group = dataset.dataView.getUint16(offset, dataset.littleEndian);
+                    offset += 2;
+                    var element = dataset.dataView.getUint16(offset, dataset.littleEndian);
+                    offset += 2;
+                    if (group !== 0xFFFE && element !== 0xE000) {
+                        break;
+                    }
+                    else {
+                    }
+                    console.log('group', Tag.intTo4digitString(group));
+                    console.log('element', Tag.intTo4digitString(element));
+                    var len = dataset.dataView.getUint32(offset, dataset.littleEndian);
+                    offset += 4;
+                    if (len !== 0) {
+                        console.log('element is 2', len);
+                        if (len > 4) {
+                            var dataView = new DataView(dataset.dataView.buffer.slice(offset, offset + len));
+                            pixelDatas.push(dataView);
+                        }
+                        else {
+                            offset - 4;
+                        }
+                        offset += len;
+                    }
+                }
+            }
+            else {
+                var frameLen = pixelData.valueLength / numberOfFrames;
+                for (var i = 0; i < numberOfFrames; i++) {
+                    var offset = pixelData.offset + (frameLen * i);
+                    var dataView = new DataView(dataset.dataView.buffer.slice(offset, offset + frameLen));
+                    pixelDatas.push(dataView);
+                }
+            }
+            return pixelDatas;
+        }
+    });
+    return PixelData;
+}());
+export default PixelData;

package/README.md

@@ -53,7 +53,7 @@ import { parse } from "@abasb75/dicom-parser";
 
 ...
 
-const dataset = parse(arrayBuffer); // ArrayBuffer
+const dataset = parse(arrayBuffer);
 
 ```
 

package/Tag.d.ts

@@ -0,0 +1,17 @@
+declare class Tag {
+    name: string;
+    vr: string;
+    group: number;
+    element: number;
+    value: unknown;
+    valueLength: number;
+    offset: number;
+    constructor(group: number, element: number, vr: string, valueLength: number, offset: number, value?: ArrayBuffer, name?: string | null);
+    generateKey(): string;
+    static getTagNameFromDictionary(groupInt: number, elementInt: number): string;
+    static getTagVRFromDictionary(group: number | string, element: number | string): string;
+    static intTo4digitString(int: number): string;
+    static int8digitString(int: number): string;
+    getValue(): void;
+}
+export default Tag;

package/Tag.js

@@ -0,0 +1,128 @@
+import TagsDictionaryEnums from "./enums/TagsDictionary";
+var Tag = /** @class */ (function () {
+    function Tag(group, element, vr, valueLength, offset, value, name) {
+        Object.defineProperty(this, "name", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: void 0
+        });
+        Object.defineProperty(this, "vr", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: void 0
+        });
+        Object.defineProperty(this, "group", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: void 0
+        });
+        Object.defineProperty(this, "element", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: void 0
+        });
+        Object.defineProperty(this, "value", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: void 0
+        });
+        Object.defineProperty(this, "valueLength", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: void 0
+        });
+        Object.defineProperty(this, "offset", {
+            enumerable: true,
+            configurable: true,
+            writable: true,
+            value: void 0
+        });
+        this.group = group;
+        this.element = element;
+        this.vr = vr;
+        this.name = name || Tag.getTagNameFromDictionary(this.group, this.element) || '';
+        this.value = value || undefined;
+        this.valueLength = valueLength;
+        this.offset = offset;
+        if (this.name === '') {
+        }
+    }
+    Object.defineProperty(Tag.prototype, "generateKey", {
+        enumerable: false,
+        configurable: true,
+        writable: true,
+        value: function () {
+            var group = Tag.intTo4digitString(this.group);
+            var element = Tag.intTo4digitString(this.element);
+            return "0x".concat(group).concat(element);
+        }
+    });
+    Object.defineProperty(Tag, "getTagNameFromDictionary", {
+        enumerable: false,
+        configurable: true,
+        writable: true,
+        value: function (groupInt, elementInt) {
+            var group = Tag.intTo4digitString(groupInt);
+            var element = Tag.intTo4digitString(elementInt);
+            var groupItems = TagsDictionaryEnums[group];
+            if (!groupItems)
+                return "";
+            var elementItem = groupItems[element];
+            if (!elementItem)
+                return "";
+            return elementItem[1];
+        }
+    });
+    Object.defineProperty(Tag, "getTagVRFromDictionary", {
+        enumerable: false,
+        configurable: true,
+        writable: true,
+        value: function (group, element) {
+            var _group, _element;
+            if (typeof group === "number") {
+                _group = Tag.intTo4digitString(group);
+            }
+            if (typeof element === "number") {
+                _element = Tag.intTo4digitString(element);
+            }
+            var groupItems = TagsDictionaryEnums[_group || group];
+            if (!groupItems)
+                return "";
+            var elementItem = groupItems[_element || element];
+            if (!elementItem)
+                return "";
+            return elementItem[0];
+        }
+    });
+    Object.defineProperty(Tag, "intTo4digitString", {
+        enumerable: false,
+        configurable: true,
+        writable: true,
+        value: function (int) {
+            return ('0000' + int.toString(16).toUpperCase()).slice(-4);
+        }
+    });
+    Object.defineProperty(Tag, "int8digitString", {
+        enumerable: false,
+        configurable: true,
+        writable: true,
+        value: function (int) {
+            return ('00000000' + int.toString(16).toUpperCase()).slice(-8);
+        }
+    });
+    Object.defineProperty(Tag.prototype, "getValue", {
+        enumerable: false,
+        configurable: true,
+        writable: true,
+        value: function () {
+        }
+    });
+    return Tag;
+}());
+export default Tag;

package/Value.d.ts

@@ -0,0 +1,12 @@
+declare class Value {
+    static byVr(dataView: DataView, offset: number, len: number, vr: string, littleEndian: boolean): string | number | DataView | (string | number)[] | undefined;
+    static CS(dataView: DataView, offset: number, len: number): string | string[];
+    static IS(dataView: DataView, offset: number, len: number): string | number;
+    static DA(dataView: DataView, offset: number, len: number): string;
+    static DS(dataView: DataView, offset: number, len: number): string | number | (string | number)[];
+    static TM(dataView: DataView, offset: number, len: number): string;
+    static US(dataView: DataView, offset: number, len: number, littleEndian?: boolean): number | undefined;
+    static OW(dataView: DataView, offset: number, len: number): DataView;
+    static getString(bytes: Uint8Array | Int8Array | ArrayBuffer): string;
+}
+export default Value;