@aaronsb/kg-cli 0.6.6 → 0.7.0

package/dist/lib/validation.js

@@ -0,0 +1,354 @@
+"use strict";
+/**
+ * Shared validation module for concept/edge CRUD (ADR-089 Phase 2).
+ *
+ * These validators are used by both interactive wizard and non-interactive
+ * flag-based creation. They ensure graph integrity at all control levels
+ * (envelope protection).
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.validateOntology = validateOntology;
+exports.validateConceptId = validateConceptId;
+exports.validateVocabTerm = validateVocabTerm;
+exports.searchVocabTerms = searchVocabTerms;
+exports.searchConceptsByLabel = searchConceptsByLabel;
+exports.matchConceptByDescription = matchConceptByDescription;
+exports.validateEdgeCreation = validateEdgeCreation;
+exports.resolveConceptByLabel = resolveConceptByLabel;
+/**
+ * Validate that an ontology exists.
+ */
+async function validateOntology(client, ontologyName) {
+    try {
+        const ontologies = await client.listOntologies();
+        const exists = ontologies.ontologies.some((o) => o.ontology.toLowerCase() === ontologyName.toLowerCase());
+        if (exists) {
+            // Find exact case match
+            const match = ontologies.ontologies.find((o) => o.ontology.toLowerCase() === ontologyName.toLowerCase());
+            return {
+                valid: true,
+                data: { ontology: match.ontology },
+            };
+        }
+        return {
+            valid: false,
+            error: `Ontology '${ontologyName}' not found. Use 'kg ontology list' to see available ontologies.`,
+        };
+    }
+    catch (error) {
+        return {
+            valid: false,
+            error: `Failed to validate ontology: ${error.message}`,
+        };
+    }
+}
+/**
+ * Validate that a concept ID exists.
+ */
+async function validateConceptId(client, conceptId) {
+    try {
+        const concept = await client.getConceptById(conceptId);
+        return {
+            valid: true,
+            data: {
+                concept_id: concept.concept_id,
+                label: concept.label,
+            },
+        };
+    }
+    catch (error) {
+        if (error.response?.status === 404) {
+            return {
+                valid: false,
+                error: `Concept '${conceptId}' not found.`,
+            };
+        }
+        return {
+            valid: false,
+            error: `Failed to validate concept: ${error.response?.data?.detail || error.message}`,
+        };
+    }
+}
+/**
+ * Validate a vocabulary term exists, optionally creating it.
+ */
+async function validateVocabTerm(client, term, createIfMissing = false) {
+    try {
+        // Normalize the term (uppercase, underscores)
+        const normalizedTerm = term.toUpperCase().replace(/\s+/g, '_').replace(/[^A-Z0-9_]/g, '');
+        if (!normalizedTerm) {
+            return {
+                valid: false,
+                error: 'Vocabulary term cannot be empty after normalization.',
+            };
+        }
+        // Try to get similar terms - if the API succeeds, the term exists
+        // (API returns 404 if term not found)
+        try {
+            const similar = await client.getSimilarTypes(normalizedTerm, 5);
+            // API succeeded, term exists
+            return {
+                valid: true,
+                data: {
+                    exists: true,
+                    term: similar.relationship_type || normalizedTerm,
+                    similar_terms: similar.similar_types?.slice(0, 3).map((t) => ({
+                        term: t.relationship_type,
+                        similarity: t.similarity,
+                    })),
+                },
+            };
+        }
+        catch (apiError) {
+            // 404 means term doesn't exist, other errors are actual failures
+            if (apiError.response?.status !== 404) {
+                throw apiError;
+            }
+        }
+        // Term doesn't exist (got 404)
+        if (!createIfMissing) {
+            return {
+                valid: false,
+                error: `Vocabulary term '${normalizedTerm}' not found. Use --create-vocab to create it.`,
+                data: {
+                    exists: false,
+                    term: normalizedTerm,
+                    similar_terms: [], // Can't get similar terms for non-existent type
+                },
+            };
+        }
+        // Create the new vocab term
+        try {
+            await client.addEdgeType({
+                relationship_type: normalizedTerm,
+                category: 'structural', // Default category
+                description: `User-created vocabulary term: ${normalizedTerm}`,
+                is_builtin: false,
+            });
+            return {
+                valid: true,
+                warning: `Created new vocabulary term '${normalizedTerm}'.`,
+                data: {
+                    exists: false,
+                    created: true,
+                    term: normalizedTerm,
+                },
+            };
+        }
+        catch (createError) {
+            return {
+                valid: false,
+                error: `Failed to create vocabulary term: ${createError.response?.data?.detail || createError.message}`,
+            };
+        }
+    }
+    catch (error) {
+        return {
+            valid: false,
+            error: `Failed to validate vocabulary term: ${error.response?.data?.detail || error.message}`,
+        };
+    }
+}
+/**
+ * Search for vocabulary terms by similarity.
+ */
+async function searchVocabTerms(client, query, limit = 5) {
+    try {
+        const similar = await client.getSimilarTypes(query, limit);
+        if (!similar.similar_types || similar.similar_types.length === 0) {
+            return {
+                valid: true,
+                data: [],
+            };
+        }
+        return {
+            valid: true,
+            data: similar.similar_types.map((t) => ({
+                term: t.relationship_type,
+                similarity: t.similarity,
+            })),
+        };
+    }
+    catch (error) {
+        return {
+            valid: false,
+            error: `Failed to search vocabulary: ${error.response?.data?.detail || error.message}`,
+        };
+    }
+}
+/**
+ * Search for concepts by label similarity.
+ */
+async function searchConceptsByLabel(client, query, ontology, limit = 5) {
+    try {
+        const results = await client.searchConcepts({
+            query,
+            limit,
+            min_similarity: 0.5, // Lower threshold for search
+            ontology, // Filter by ontology if specified
+        });
+        return {
+            valid: true,
+            data: results.results.map((r) => ({
+                concept_id: r.concept_id,
+                label: r.label,
+                similarity: r.score,
+            })),
+        };
+    }
+    catch (error) {
+        return {
+            valid: false,
+            error: `Failed to search concepts: ${error.response?.data?.detail || error.message}`,
+        };
+    }
+}
+/**
+ * Match a concept description against existing concepts.
+ * Uses the same similarity matching as automatic ingestion.
+ *
+ * @param description Description to match
+ * @param ontology Target ontology
+ * @param matchingMode How to handle matches: auto, force_create, match_only
+ */
+async function matchConceptByDescription(client, description, ontology, matchingMode = 'auto') {
+    if (matchingMode === 'force_create') {
+        // Skip matching entirely
+        return {
+            valid: true,
+            data: {
+                matched: false,
+                created: false,
+            },
+        };
+    }
+    try {
+        // Search for similar concepts using the description
+        const results = await client.searchConcepts({
+            query: description,
+            limit: 3,
+            min_similarity: 0.85, // High threshold for matching
+        });
+        if (results.results.length > 0) {
+            const best = results.results[0];
+            return {
+                valid: true,
+                data: {
+                    matched: true,
+                    concept_id: best.concept_id,
+                    label: best.label,
+                    similarity: best.score,
+                },
+            };
+        }
+        // No match found
+        if (matchingMode === 'match_only') {
+            return {
+                valid: false,
+                error: 'No matching concept found and matching_mode is match_only.',
+            };
+        }
+        return {
+            valid: true,
+            data: {
+                matched: false,
+            },
+        };
+    }
+    catch (error) {
+        return {
+            valid: false,
+            error: `Failed to match concept: ${error.response?.data?.detail || error.message}`,
+        };
+    }
+}
+/**
+ * Validate all components of an edge creation request.
+ */
+async function validateEdgeCreation(client, fromConceptId, toConceptId, relationshipType, options = {}) {
+    const errors = [];
+    // Validate from concept
+    const fromResult = await validateConceptId(client, fromConceptId);
+    if (!fromResult.valid) {
+        errors.push(`From concept: ${fromResult.error}`);
+    }
+    // Validate to concept
+    const toResult = await validateConceptId(client, toConceptId);
+    if (!toResult.valid) {
+        errors.push(`To concept: ${toResult.error}`);
+    }
+    // Validate vocab term
+    const vocabResult = await validateVocabTerm(client, relationshipType, options.createVocab);
+    if (!vocabResult.valid) {
+        errors.push(`Relationship type: ${vocabResult.error}`);
+    }
+    if (errors.length > 0) {
+        return {
+            valid: false,
+            error: errors.join('\n'),
+        };
+    }
+    return {
+        valid: true,
+        warning: vocabResult.warning,
+        data: {
+            from: fromResult.data,
+            to: toResult.data,
+            type: vocabResult.data.term,
+        },
+    };
+}
+/**
+ * Resolve a concept by label (semantic lookup).
+ * Searches for the best matching concept by label.
+ */
+async function resolveConceptByLabel(client, label, ontology) {
+    try {
+        // First try exact label match via list
+        const listResult = await client.listConceptsCRUD({
+            label_contains: label,
+            ontology,
+            limit: 10,
+        });
+        // Check for exact match
+        const exactMatch = listResult.concepts.find((c) => c.label.toLowerCase() === label.toLowerCase());
+        if (exactMatch) {
+            return {
+                valid: true,
+                data: {
+                    concept_id: exactMatch.concept_id,
+                    label: exactMatch.label,
+                    similarity: 1.0,
+                },
+            };
+        }
+        // Fall back to semantic search
+        const searchResult = await client.searchConcepts({
+            query: label,
+            limit: 1,
+            min_similarity: 0.7,
+        });
+        if (searchResult.results.length > 0) {
+            const best = searchResult.results[0];
+            return {
+                valid: true,
+                data: {
+                    concept_id: best.concept_id,
+                    label: best.label,
+                    similarity: best.score,
+                },
+            };
+        }
+        return {
+            valid: false,
+            error: `No concept found matching label '${label}'.`,
+        };
+    }
+    catch (error) {
+        return {
+            valid: false,
+            error: `Failed to resolve concept: ${error.response?.data?.detail || error.message}`,
+        };
+    }
+}
+//# sourceMappingURL=validation.js.map

package/dist/lib/validation.js.map

@@ -0,0 +1 @@
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package/dist/mcp/formatters/concept.d.ts

@@ -0,0 +1,24 @@
+/**
+ * Concept and search result formatters
+ */
+import type { SearchResponse, ConceptDetailsResponse, FindConnectionBySearchResponse, RelatedConceptsResponse } from '../../types/index.js';
+/**
+ * Format search results as markdown
+ */
+export declare function formatSearchResults(result: SearchResponse): string;
+/**
+ * Format concept details as markdown
+ * @param concept - The concept details to format
+ * @param truncateEvidence - Whether to truncate full_text context to 200 chars (default: true)
+ */
+export declare function formatConceptDetails(concept: ConceptDetailsResponse, truncateEvidence?: boolean): string;
+/**
+ * Format connection paths as markdown
+ * Enhanced to match CLI output with full concept details, evidence samples, and path visualization
+ */
+export declare function formatConnectionPaths(result: FindConnectionBySearchResponse): string;
+/**
+ * Format related concepts as markdown
+ */
+export declare function formatRelatedConcepts(result: RelatedConceptsResponse): string;
+//# sourceMappingURL=concept.d.ts.map

package/dist/mcp/formatters/concept.d.ts.map

@@ -0,0 +1 @@
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package/dist/mcp/formatters/concept.js

@@ -0,0 +1,243 @@
+"use strict";
+/**
+ * Concept and search result formatters
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.formatSearchResults = formatSearchResults;
+exports.formatConceptDetails = formatConceptDetails;
+exports.formatConnectionPaths = formatConnectionPaths;
+exports.formatRelatedConcepts = formatRelatedConcepts;
+const utils_js_1 = require("./utils.js");
+/**
+ * Format search results as markdown
+ */
+function formatSearchResults(result) {
+    let output = `# Search: "${result.query}"\n\n`;
+    output += `Found ${result.count} concepts (threshold: ${(result.threshold_used || 0.7) * 100}%)\n\n`;
+    if (result.count === 0) {
+        output += 'No concepts found matching this query.\n';
+        return output;
+    }
+    result.results.forEach((concept, i) => {
+        output += `## ${i + 1}. ${concept.label}\n`;
+        if (concept.description) {
+            output += `${concept.description}\n\n`;
+        }
+        output += `ID: ${concept.concept_id}\n`;
+        output += `Similarity: ${(concept.score * 100).toFixed(1)}%\n`;
+        output += `Documents: ${concept.documents.join(', ')}\n`;
+        output += `Evidence: ${concept.evidence_count} instances\n`;
+        if (concept.grounding_strength !== undefined || concept.grounding_display) {
+            output += `Grounding: ${(0, utils_js_1.formatGroundingWithConfidence)(concept.grounding_strength, concept.grounding_display, concept.confidence_score)}\n`;
+        }
+        if (concept.diversity_score !== undefined && concept.diversity_score !== null && concept.diversity_related_count !== undefined) {
+            output += `Diversity: ${(concept.diversity_score * 100).toFixed(1)}% (${concept.diversity_related_count} related concepts)\n`;
+        }
+        if (concept.authenticated_diversity !== undefined && concept.authenticated_diversity !== null) {
+            const authDiv = concept.authenticated_diversity;
+            const sign = authDiv >= 0 ? '+' : '';
+            // Near-zero values (|authDiv| < 0.05) are "unclear" - grounding too weak to authenticate
+            const status = Math.abs(authDiv) < 0.05 ? 'unclear ◯' :
+                authDiv > 0.3 ? 'diverse support ✅' :
+                    authDiv > 0 ? 'some support ✓' :
+                        authDiv > -0.3 ? 'weak contradiction ⚠' :
+                            'diverse contradiction ❌';
+            output += `Authenticated: ${sign}${(Math.abs(authDiv) * 100).toFixed(1)}% (${status})\n`;
+        }
+        if (concept.sample_evidence && concept.sample_evidence.length > 0) {
+            output += `\nSample Evidence (${concept.sample_evidence.length} of ${concept.evidence_count}):\n`;
+            concept.sample_evidence.forEach((inst, idx) => {
+                const truncated = inst.quote.length > 120 ? inst.quote.substring(0, 120) + '...' : inst.quote;
+                output += `${idx + 1}. ${inst.document} (para ${inst.paragraph}): "${truncated}"\n`;
+                // ADR-057: Indicate if this evidence has an image
+                if (inst.has_image && inst.source_id) {
+                    output += `   [IMAGE] Use get_source_image("${inst.source_id}") to view original image\n`;
+                }
+            });
+            output += `Tip: Use get_concept_details("${concept.concept_id}") for all evidence\n`;
+        }
+        output += '\n';
+    });
+    if (result.below_threshold_count && result.below_threshold_count > 0 && result.suggested_threshold) {
+        const thresholdPercent = (result.suggested_threshold * 100).toFixed(0);
+        output += `Note: ${result.below_threshold_count} additional concepts available at ${thresholdPercent}% threshold\n`;
+    }
+    return output;
+}
+/**
+ * Format concept details as markdown
+ * @param concept - The concept details to format
+ * @param truncateEvidence - Whether to truncate full_text context to 200 chars (default: true)
+ */
+function formatConceptDetails(concept, truncateEvidence = true) {
+    let output = `# Concept: ${concept.label}\n\n`;
+    if (concept.description) {
+        output += `${concept.description}\n\n`;
+    }
+    output += `ID: ${concept.concept_id}\n`;
+    output += `Search Terms: ${concept.search_terms.join(', ')}\n`;
+    output += `Documents: ${concept.documents.join(', ')}\n`;
+    if (concept.grounding_strength !== undefined || concept.grounding_display) {
+        output += `Grounding: ${(0, utils_js_1.formatGroundingWithConfidence)(concept.grounding_strength, concept.grounding_display, concept.confidence_score)}\n`;
+    }
+    if (concept.diversity_score !== undefined && concept.diversity_score !== null && concept.diversity_related_count !== undefined) {
+        output += `Diversity: ${(concept.diversity_score * 100).toFixed(1)}% (${concept.diversity_related_count} related concepts)\n`;
+    }
+    if (concept.authenticated_diversity !== undefined && concept.authenticated_diversity !== null) {
+        const authDiv = concept.authenticated_diversity;
+        const sign = authDiv >= 0 ? '+' : '';
+        // Near-zero values (|authDiv| < 0.05) are "unclear" - grounding too weak to authenticate
+        const status = Math.abs(authDiv) < 0.05 ? 'unclear ◯' :
+            authDiv > 0.3 ? 'diverse support ✅' :
+                authDiv > 0 ? 'some support ✓' :
+                    authDiv > -0.3 ? 'weak contradiction ⚠' :
+                        'diverse contradiction ❌';
+        output += `Authenticated: ${sign}${(Math.abs(authDiv) * 100).toFixed(1)}% (${status})\n`;
+    }
+    output += `\n## Evidence (${concept.instances.length} instances)\n\n`;
+    concept.instances.forEach((inst, i) => {
+        output += `${i + 1}. ${inst.document} (para ${inst.paragraph}): "${inst.quote}"\n`;
+        // Include full context for chapter/verse citation if available
+        if (inst.full_text) {
+            // Extract chapter/verse from full_text (e.g., "# Chapter 46\n\n1. So Israel...")
+            const chapterMatch = inst.full_text.match(/^#\s*Chapter\s+(\d+)/i);
+            if (chapterMatch) {
+                output += `   Context: Chapter ${chapterMatch[1]}\n`;
+            }
+            // Show full context or truncated based on parameter
+            const cleanedContext = inst.full_text.replace(/^#[^\n]*\n+/, '');
+            if (cleanedContext && cleanedContext !== inst.quote) {
+                if (truncateEvidence && cleanedContext.length > 200) {
+                    // Truncate to 200 chars for token efficiency
+                    output += `   Full context: ${cleanedContext.substring(0, 200)}...\n`;
+                }
+                else {
+                    // Show complete context
+                    output += `   Full context: ${cleanedContext}\n`;
+                }
+            }
+        }
+        // ADR-057: Indicate if this evidence has an image
+        if (inst.has_image && inst.source_id) {
+            output += `   Source: ${inst.source_id} [IMAGE AVAILABLE]\n`;
+            output += `   Use get_source_image("${inst.source_id}") to view and verify the original image\n`;
+        }
+    });
+    if (concept.relationships.length > 0) {
+        output += `\n## Relationships (${concept.relationships.length})\n\n`;
+        concept.relationships.forEach(rel => {
+            const confidence = rel.confidence ? ` (${(rel.confidence * 100).toFixed(0)}%)` : '';
+            output += `${rel.rel_type} -> ${rel.to_label}${confidence}\n`;
+        });
+    }
+    else {
+        output += '\nNo outgoing relationships\n';
+    }
+    return output;
+}
+/**
+ * Format connection paths as markdown
+ * Enhanced to match CLI output with full concept details, evidence samples, and path visualization
+ */
+function formatConnectionPaths(result) {
+    let output = `# Connection: ${result.from_concept?.label || result.from_query} -> ${result.to_concept?.label || result.to_query}\n\n`;
+    output += `From Match: ${(result.from_similarity * 100).toFixed(1)}%\n`;
+    output += `To Match: ${(result.to_similarity * 100).toFixed(1)}%\n`;
+    output += `Max Hops: ${result.max_hops}\n\n`;
+    if (result.count === 0) {
+        output += `No connection found within ${result.max_hops} hops\n`;
+        return output;
+    }
+    output += `Found ${result.count} path(s):\n\n`;
+    result.paths.forEach((path, pathIdx) => {
+        output += `## Path ${pathIdx + 1} (${path.hops} hop${path.hops !== 1 ? 's' : ''})\n\n`;
+        // Full path visualization with arrows
+        output += '### Path Overview\n\n';
+        const pathSegments = [];
+        path.nodes.forEach((node, j) => {
+            pathSegments.push(node.label);
+            if (j < path.relationships.length) {
+                pathSegments.push(`↓ ${path.relationships[j]}`);
+            }
+        });
+        output += pathSegments.join('\n') + '\n\n';
+        // Detailed concept information for each node
+        path.nodes.forEach((node, nodeIdx) => {
+            output += `### ${nodeIdx + 1}. ${node.label}\n\n`;
+            // Concept ID and description
+            output += `**ID:** ${node.id}\n`;
+            if (node.description) {
+                output += `**Description:** ${node.description}\n`;
+            }
+            // Grounding strength with confidence-awareness
+            if (node.grounding_strength !== undefined || node.grounding_display) {
+                output += `**Grounding:** ${(0, utils_js_1.formatGroundingWithConfidence)(node.grounding_strength, node.grounding_display, node.confidence_score)}\n`;
+            }
+            // Diversity metrics if available
+            if (node.diversity_score !== undefined && node.diversity_score !== null && node.diversity_related_count !== undefined) {
+                output += `**Diversity:** ${(node.diversity_score * 100).toFixed(1)}% (${node.diversity_related_count} related concepts)\n`;
+            }
+            // Authenticated diversity if available
+            if (node.authenticated_diversity !== undefined && node.authenticated_diversity !== null) {
+                const authDiv = node.authenticated_diversity;
+                const sign = authDiv >= 0 ? '+' : '';
+                // Near-zero values (|authDiv| < 0.05) are "unclear" - grounding too weak to authenticate
+                const status = Math.abs(authDiv) < 0.05 ? 'unclear ◯' :
+                    authDiv > 0.3 ? 'diverse support ✅' :
+                        authDiv > 0 ? 'some support ✓' :
+                            authDiv > -0.3 ? 'weak contradiction ⚠' :
+                                'diverse contradiction ❌';
+                output += `**Authenticated:** ${sign}${(Math.abs(authDiv) * 100).toFixed(1)}% (${status})\n`;
+            }
+            // Evidence samples (limit to 3 for token efficiency)
+            if (node.sample_evidence && node.sample_evidence.length > 0) {
+                const evidenceCount = node.sample_evidence.length;
+                output += `\n**Evidence (${evidenceCount} sample${evidenceCount !== 1 ? 's' : ''}):**\n\n`;
+                node.sample_evidence.slice(0, 3).forEach((inst, idx) => {
+                    const truncated = inst.quote.length > 150 ? inst.quote.substring(0, 150) + '...' : inst.quote;
+                    output += `${idx + 1}. ${inst.document} (para ${inst.paragraph}):\n`;
+                    output += `   "${truncated}"\n`;
+                    // ADR-057: Image availability
+                    if (inst.has_image && inst.source_id) {
+                        output += `   [IMAGE AVAILABLE] Use get_source_image("${inst.source_id}") to view\n`;
+                    }
+                });
+                if (evidenceCount > 3) {
+                    output += `   ... and ${evidenceCount - 3} more samples\n`;
+                    output += `   Use get_concept_details("${node.id}") for all evidence\n`;
+                }
+            }
+            // Show relationship to next node
+            if (nodeIdx < path.relationships.length) {
+                output += `\n**→ ${path.relationships[nodeIdx]}**\n`;
+            }
+            output += '\n';
+        });
+        output += '---\n\n';
+    });
+    return output;
+}
+/**
+ * Format related concepts as markdown
+ */
+function formatRelatedConcepts(result) {
+    let output = `# Related Concepts\n\n`;
+    output += `From: ${result.concept_id}\n`;
+    output += `Max Depth: ${result.max_depth}\n`;
+    output += `Found: ${result.count} concepts\n\n`;
+    if (result.count === 0) {
+        output += 'No related concepts found\n';
+        return output;
+    }
+    let currentDistance = -1;
+    result.results.forEach(concept => {
+        if (concept.distance !== currentDistance) {
+            currentDistance = concept.distance;
+            output += `\n## Distance ${currentDistance}\n\n`;
+        }
+        output += `${concept.label} (${concept.concept_id})\n`;
+        output += `Path: ${concept.path_types.join(' -> ')}\n`;
+    });
+    return output;
+}
+//# sourceMappingURL=concept.js.map

package/dist/mcp/formatters/concept.js.map

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