@a16njs/engine 0.7.0 → 0.8.0

package/dist/path-rewriter.d.ts

@@ -5,6 +5,15 @@ import type { WrittenFile } from '@a16njs/models';
  * Used to rewrite path references in content during format conversion.
  */
 export type PathMapping = Map<string, string>;
+/**
+ * Result of building a source-to-target path mapping.
+ */
+export interface BuildMappingResult {
+    /** The computed path mapping */
+    mapping: PathMapping;
+    /** Warnings produced during mapping construction (e.g., ambiguous collisions) */
+    warnings: Warning[];
+}
 /**
  * Result of a path rewriting operation.
  */
@@ -19,20 +28,31 @@ export interface RewriteResult {
  *
  * Given the discovered items (with sourcePaths relative to sourceRoot)
  * and the written files (with absolute paths under targetRoot), produces
- * a Map where keys are source-relative paths and values are target-relative paths.
+ * a Map where keys are source-relative paths and values are target-relative
+ * paths, along with any warnings produced during construction.
  *
- * The mapping is derived from the `sourceItems` array on each WrittenFile,
- * which links each output file back to the source AgentCustomization(s) that
- * produced it. This handles merges, extension changes, and directory flattening
- * naturally because the mapping is derived from actual emit output.
+ * Per-WrittenFile source-path derivation:
+ * - If `file.sourcePaths` is set and non-empty, those explicit paths are used
+ *   (and `sourceItems[*].sourcePath` is NOT added as a mapping key for that
+ *   file). This is the correct behaviour for outputs that represent source
+ *   paths which are not first-class `AgentCustomization`s — e.g., AgentSkillIO
+ *   resource files whose underlying `sourceItems` points at the skill's
+ *   SKILL.md rather than at the resource file itself.
+ * - Otherwise, falls back to `sourceItems[*].sourcePath` (legacy behaviour,
+ *   used by every plugin that doesn't populate `sourcePaths`).
  *
- * @param _discovered - Items discovered from the source plugin (unused directly; mapping comes from written.sourceItems)
+ * Collision detection: if two WrittenFiles derive the same source-path key
+ * but map to DIFFERENT target paths, an `Approximated` warning is emitted
+ * and last-writer-wins for the mapping itself (historical behaviour).
+ * Same-target duplicates are silently idempotent.
+ *
+ * @param _discovered - Items discovered from the source plugin (unused directly; mapping comes from written)
  * @param written - Files written (or planned) by the target plugin
  * @param _sourceRoot - Root directory used for discovery (unused; sourcePaths are already relative)
  * @param targetRoot - Root directory used for emission
- * @returns A map of source-relative path to target-relative path
+ * @returns `{ mapping, warnings }` — source-to-target map and any collision warnings
  */
-export declare function buildMapping(_discovered: AgentCustomization[], written: WrittenFile[], _sourceRoot: string, targetRoot: string): PathMapping;
+export declare function buildMapping(_discovered: AgentCustomization[], written: WrittenFile[], _sourceRoot: string, targetRoot: string): BuildMappingResult;
 /**
  * Rewrite file path references in item content.
  *
@@ -41,6 +61,12 @@ export declare function buildMapping(_discovered: AgentCustomization[], written:
  * longest-first to prevent partial match corruption (e.g., replacing
  * "foo/bar.mdc.bak" before "foo/bar.mdc").
  *
+ * For `AgentSkillIO` items this ALSO rewrites content inside the `files` map
+ * for entries whose key sits under a spec-designated text subtree (`scripts/`
+ * or `references/`). Entries under `assets/` and any other subtree are NOT
+ * rewritten (they may be binary or contain placeholder strings). See
+ * `isRewritableSkillResource`.
+ *
  * Items are cloned before modification; originals are not mutated.
  *
  * @param items - The items whose content should be rewritten
@@ -56,6 +82,15 @@ export declare function rewriteContent(items: AgentCustomization[], mapping: Pat
  * and file extensions) but is NOT present in the mapping (i.e., it
  * wasn't converted).
  *
+ * For `AgentSkillIO` items this ALSO scans ride-along files under the two
+ * spec-designated text subtrees (`scripts/` and `references/`) using the same
+ * rules. `assets/` and unknown subtrees are intentionally skipped — rewriting
+ * their content is out of scope, so flagging orphans there would be a false
+ * positive (a placeholder string in a template is not an "orphan", it's
+ * intentional content). Skill-level attribution (via `item.sourcePath`) is
+ * used for orphans found inside ride-along files; per-file attribution is
+ * not currently plumbed.
+ *
  * @param items - The items to scan for orphan references
  * @param mapping - The source-to-target path mapping
  * @param sourcePluginPrefixes - Known directory prefixes for the source format

package/dist/path-rewriter.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"path-rewriter.d.ts","sourceRoot":"","sources":["../src/path-rewriter.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,kBAAkB,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAC;AAElE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,gBAAgB,CAAC;AAElD;;;GAGG;AACH,MAAM,MAAM,WAAW,GAAG,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;AAE9C;;GAEG;AACH,MAAM,WAAW,aAAa;IAC5B,2EAA2E;IAC3E,KAAK,EAAE,kBAAkB,EAAE,CAAC;IAC5B,kDAAkD;IAClD,gBAAgB,EAAE,MAAM,CAAC;CAC1B;AAED;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAgB,YAAY,CAC1B,WAAW,EAAE,kBAAkB,EAAE,EACjC,OAAO,EAAE,WAAW,EAAE,EACtB,WAAW,EAAE,MAAM,EACnB,UAAU,EAAE,MAAM,GACjB,WAAW,CAoBb;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,cAAc,CAC5B,KAAK,EAAE,kBAAkB,EAAE,EAC3B,OAAO,EAAE,WAAW,GACnB,aAAa,CAgDf;AASD;;;;;;;;;;;;;;;GAeG;AACH,wBAAgB,aAAa,CAC3B,KAAK,EAAE,kBAAkB,EAAE,EAC3B,OAAO,EAAE,WAAW,EACpB,oBAAoB,EAAE,MAAM,EAAE,EAC9B,gBAAgB,EAAE,MAAM,EAAE,GACzB,OAAO,EAAE,CAmCX"}
+{"version":3,"file":"path-rewriter.d.ts","sourceRoot":"","sources":["../src/path-rewriter.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,kBAAkB,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAC;AAElE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,gBAAgB,CAAC;AAElD;;;GAGG;AACH,MAAM,MAAM,WAAW,GAAG,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;AAE9C;;GAEG;AACH,MAAM,WAAW,kBAAkB;IACjC,gCAAgC;IAChC,OAAO,EAAE,WAAW,CAAC;IACrB,iFAAiF;IACjF,QAAQ,EAAE,OAAO,EAAE,CAAC;CACrB;AAED;;GAEG;AACH,MAAM,WAAW,aAAa;IAC5B,2EAA2E;IAC3E,KAAK,EAAE,kBAAkB,EAAE,CAAC;IAC5B,kDAAkD;IAClD,gBAAgB,EAAE,MAAM,CAAC;CAC1B;AAyBD;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA4BG;AACH,wBAAgB,YAAY,CAC1B,WAAW,EAAE,kBAAkB,EAAE,EACjC,OAAO,EAAE,WAAW,EAAE,EACtB,WAAW,EAAE,MAAM,EACnB,UAAU,EAAE,MAAM,GACjB,kBAAkB,CAiDpB;AAoCD;;;;;;;;;;;;;;;;;;;GAmBG;AACH,wBAAgB,cAAc,CAC5B,KAAK,EAAE,kBAAkB,EAAE,EAC3B,OAAO,EAAE,WAAW,GACnB,aAAa,CAiDf;AASD;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AACH,wBAAgB,aAAa,CAC3B,KAAK,EAAE,kBAAkB,EAAE,EAC3B,OAAO,EAAE,WAAW,EACpB,oBAAoB,EAAE,MAAM,EAAE,EAC9B,gBAAgB,EAAE,MAAM,EAAE,GACzB,OAAO,EAAE,CAmDX"}

package/dist/path-rewriter.js

@@ -1,40 +1,133 @@
 import * as path from 'path';
-import { WarningCode } from '@a16njs/models';
+import { WarningCode, isAgentSkillIO } from '@a16njs/models';
+/**
+ * Per the AgentSkills.io specification (§Optional directories), a skill
+ * directory may contain ride-along files under a few conventional subtrees:
+ *
+ * - `scripts/` — executable code (shell, python, etc.); text by convention.
+ * - `references/` — additional documentation (markdown); text by convention.
+ * - `assets/` — templates, images, data files; may be binary or contain
+ *   intentional placeholder strings that must NOT be rewritten.
+ * - Any other directory — freeform, not guaranteed to be text.
+ *
+ * Content rewriting (and orphan scanning) of ride-along files is bounded to
+ * the two spec-designated text subtrees (`scripts/` and `references/`) so we
+ * do not corrupt binary/placeholder content in `assets/` or unknown subtrees.
+ *
+ * See https://agentskills.io/specification#optional-directories
+ *
+ * Kept private to this module; promote to `@a16njs/models` only if a second
+ * caller appears.
+ */
+function isRewritableSkillResource(key) {
+    return key.startsWith('scripts/') || key.startsWith('references/');
+}
 /**
  * Build a mapping from source-relative paths to target-relative paths.
  *
  * Given the discovered items (with sourcePaths relative to sourceRoot)
  * and the written files (with absolute paths under targetRoot), produces
- * a Map where keys are source-relative paths and values are target-relative paths.
+ * a Map where keys are source-relative paths and values are target-relative
+ * paths, along with any warnings produced during construction.
  *
- * The mapping is derived from the `sourceItems` array on each WrittenFile,
- * which links each output file back to the source AgentCustomization(s) that
- * produced it. This handles merges, extension changes, and directory flattening
- * naturally because the mapping is derived from actual emit output.
+ * Per-WrittenFile source-path derivation:
+ * - If `file.sourcePaths` is set and non-empty, those explicit paths are used
+ *   (and `sourceItems[*].sourcePath` is NOT added as a mapping key for that
+ *   file). This is the correct behaviour for outputs that represent source
+ *   paths which are not first-class `AgentCustomization`s — e.g., AgentSkillIO
+ *   resource files whose underlying `sourceItems` points at the skill's
+ *   SKILL.md rather than at the resource file itself.
+ * - Otherwise, falls back to `sourceItems[*].sourcePath` (legacy behaviour,
+ *   used by every plugin that doesn't populate `sourcePaths`).
  *
- * @param _discovered - Items discovered from the source plugin (unused directly; mapping comes from written.sourceItems)
+ * Collision detection: if two WrittenFiles derive the same source-path key
+ * but map to DIFFERENT target paths, an `Approximated` warning is emitted
+ * and last-writer-wins for the mapping itself (historical behaviour).
+ * Same-target duplicates are silently idempotent.
+ *
+ * @param _discovered - Items discovered from the source plugin (unused directly; mapping comes from written)
  * @param written - Files written (or planned) by the target plugin
  * @param _sourceRoot - Root directory used for discovery (unused; sourcePaths are already relative)
  * @param targetRoot - Root directory used for emission
- * @returns A map of source-relative path to target-relative path
+ * @returns `{ mapping, warnings }` — source-to-target map and any collision warnings
  */
 export function buildMapping(_discovered, written, _sourceRoot, targetRoot) {
     const mapping = new Map();
+    const warnings = [];
     for (const file of written) {
         // Compute target-relative path using POSIX separators for consistency
         const targetRelative = path.relative(targetRoot, file.path).split(path.sep).join('/');
-        // Map each source item's sourcePath to this target path
-        if (file.sourceItems) {
-            for (const sourceItem of file.sourceItems) {
-                if (sourceItem.sourcePath) {
-                    // Normalize to POSIX separators
-                    const normalizedSourcePath = sourceItem.sourcePath.split(path.sep).join('/');
-                    mapping.set(normalizedSourcePath, targetRelative);
-                }
+        // Prefer explicit sourcePaths when populated; otherwise fall back to
+        // sourceItems[*].sourcePath (legacy behaviour). Explicit sourcePaths
+        // REPLACE the sourceItems-based derivation for this file (see JSDoc).
+        //
+        // Empty-string entries are filtered from BOTH branches: an empty mapping
+        // key would hang `applyMapping`, since `indexOf('')` always returns 0 and
+        // `idx += 0` never advances. The fallback branch has always filtered
+        // falsy values; mirror that defence in the explicit branch since
+        // `WrittenFile.sourcePaths` is part of `@a16njs/models`'s public API and
+        // a third-party plugin could populate it with ''.
+        let sourcePathCandidates;
+        if (file.sourcePaths && file.sourcePaths.length > 0) {
+            sourcePathCandidates = file.sourcePaths.filter((p) => p.length > 0);
+        }
+        else if (file.sourceItems) {
+            sourcePathCandidates = file.sourceItems
+                .map((s) => s.sourcePath)
+                .filter((p) => Boolean(p));
+        }
+        else {
+            sourcePathCandidates = [];
+        }
+        for (const rawSourcePath of sourcePathCandidates) {
+            const normalized = rawSourcePath.split(path.sep).join('/');
+            const existing = mapping.get(normalized);
+            if (existing !== undefined && existing !== targetRelative) {
+                warnings.push({
+                    code: WarningCode.Approximated,
+                    message: `Ambiguous path mapping: '${normalized}' maps to both ` +
+                        `'${existing}' and '${targetRelative}'. The plugin emitting ` +
+                        `these WrittenFiles should populate 'sourcePaths' explicitly ` +
+                        `to disambiguate.`,
+                    sources: [normalized],
+                });
             }
+            // Last-writer-wins for mapping (preserves historical behaviour)
+            mapping.set(normalized, targetRelative);
         }
     }
-    return mapping;
+    return { mapping, warnings };
+}
+/**
+ * Apply a path mapping to a single string, returning the rewritten string
+ * and the count of replacements made.
+ *
+ * `sortedEntries` must be pre-sorted longest-first to prevent partial-match
+ * corruption (e.g., replacing "foo/bar.mdc.bak" before "foo/bar.mdc").
+ */
+function applyMapping(content, sortedEntries) {
+    let current = content;
+    let replaced = 0;
+    for (const [sourcePath, targetPath] of sortedEntries) {
+        // Defence-in-depth against an empty key slipping past buildMapping:
+        // `indexOf('')` returns 0 and `idx += 0` never advances, producing an
+        // infinite loop. buildMapping filters empties at the boundary; this
+        // second guard means `applyMapping` is safe against any caller that
+        // constructs a mapping by hand.
+        if (sourcePath.length === 0)
+            continue;
+        let count = 0;
+        let idx = 0;
+        while ((idx = current.indexOf(sourcePath, idx)) !== -1) {
+            count++;
+            idx += sourcePath.length;
+        }
+        if (count > 0) {
+            current = current.split(sourcePath).join(targetPath);
+            replaced += count;
+        }
+    }
+    return { content: current, replaced };
 }
 /**
  * Rewrite file path references in item content.
@@ -44,6 +137,12 @@ export function buildMapping(_discovered, written, _sourceRoot, targetRoot) {
  * longest-first to prevent partial match corruption (e.g., replacing
  * "foo/bar.mdc.bak" before "foo/bar.mdc").
  *
+ * For `AgentSkillIO` items this ALSO rewrites content inside the `files` map
+ * for entries whose key sits under a spec-designated text subtree (`scripts/`
+ * or `references/`). Entries under `assets/` and any other subtree are NOT
+ * rewritten (they may be binary or contain placeholder strings). See
+ * `isRewritableSkillResource`.
+ *
  * Items are cloned before modification; originals are not mutated.
  *
  * @param items - The items whose content should be rewritten
@@ -62,27 +161,29 @@ export function rewriteContent(items, mapping) {
     const sortedEntries = Array.from(mapping.entries()).sort((a, b) => b[0].length - a[0].length);
     let totalReplacements = 0;
     const rewrittenItems = items.map((item) => {
-        // Clone the item (shallow clone is sufficient since we only modify content)
+        // Shallow clone — we only mutate content and files on the clone.
         const clone = { ...item };
-        let content = clone.content;
-        // NOTE: Replacements are applied sequentially. This is safe because source
-        // and target paths use different plugin directory prefixes, so a target path
-        // won't match a subsequent source key.
-        for (const [sourcePath, targetPath] of sortedEntries) {
-            // Count occurrences before replacement
-            let count = 0;
-            let idx = 0;
-            while ((idx = content.indexOf(sourcePath, idx)) !== -1) {
-                count++;
-                idx += sourcePath.length;
-            }
-            if (count > 0) {
-                // Use split+join for exact string replacement (no regex escaping needed)
-                content = content.split(sourcePath).join(targetPath);
-                totalReplacements += count;
+        const bodyResult = applyMapping(clone.content, sortedEntries);
+        clone.content = bodyResult.content;
+        totalReplacements += bodyResult.replaced;
+        // AgentSkillIO ride-along files under scripts/ and references/:
+        // clone the files map so originals are never mutated, and rewrite
+        // eligible entries.
+        if (isAgentSkillIO(clone)) {
+            const originalFiles = clone.files ?? {};
+            const newFiles = {};
+            for (const [key, value] of Object.entries(originalFiles)) {
+                if (isRewritableSkillResource(key)) {
+                    const fileResult = applyMapping(value, sortedEntries);
+                    newFiles[key] = fileResult.content;
+                    totalReplacements += fileResult.replaced;
+                }
+                else {
+                    newFiles[key] = value;
+                }
             }
+            clone.files = newFiles;
         }
-        clone.content = content;
         return clone;
     });
     return {
@@ -104,6 +205,15 @@ function escapeRegExp(str) {
  * and file extensions) but is NOT present in the mapping (i.e., it
  * wasn't converted).
  *
+ * For `AgentSkillIO` items this ALSO scans ride-along files under the two
+ * spec-designated text subtrees (`scripts/` and `references/`) using the same
+ * rules. `assets/` and unknown subtrees are intentionally skipped — rewriting
+ * their content is out of scope, so flagging orphans there would be a false
+ * positive (a placeholder string in a template is not an "orphan", it's
+ * intentional content). Skill-level attribution (via `item.sourcePath`) is
+ * used for orphans found inside ride-along files; per-file attribution is
+ * not currently plumbed.
+ *
  * @param items - The items to scan for orphan references
  * @param mapping - The source-to-target path mapping
  * @param sourcePluginPrefixes - Known directory prefixes for the source format
@@ -124,20 +234,34 @@ export function detectOrphans(items, mapping, sourcePluginPrefixes, sourceExtens
     const escapedPrefixes = sourcePluginPrefixes.map(escapeRegExp).join('|');
     const escapedExtensions = sourceExtensions.map(escapeRegExp).join('|');
     const pattern = new RegExp(`(?:${escapedPrefixes})[^\\s)\\]}>,"']+(?:${escapedExtensions})`, 'g');
-    for (const item of items) {
-        const matches = item.content.matchAll(pattern);
+    const scanString = (content, attributionSource) => {
+        const matches = content.matchAll(pattern);
         for (const match of matches) {
             const foundPath = match[0];
-            const key = `${item.sourcePath ?? ''}::${foundPath}`;
+            const key = `${attributionSource ?? ''}::${foundPath}`;
             if (!mappedPaths.has(foundPath) && !seen.has(key)) {
                 seen.add(key);
                 warnings.push({
                     code: WarningCode.OrphanPathRef,
                     message: `Orphan path reference: '${foundPath}' is not in the conversion set`,
-                    sources: item.sourcePath ? [item.sourcePath] : undefined,
+                    sources: attributionSource ? [attributionSource] : undefined,
                 });
             }
         }
+    };
+    for (const item of items) {
+        scanString(item.content, item.sourcePath);
+        // AgentSkillIO ride-along files under scripts/ and references/:
+        // scan content for orphans. Skill-level attribution via item.sourcePath;
+        // per-file attribution is not plumbed today.
+        if (isAgentSkillIO(item)) {
+            const files = item.files ?? {};
+            for (const [key, value] of Object.entries(files)) {
+                if (isRewritableSkillResource(key)) {
+                    scanString(value, item.sourcePath);
+                }
+            }
+        }
     }
     return warnings;
 }

package/dist/path-rewriter.js.map

@@ -1 +1 @@
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package/dist/transformation.d.ts.map

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package/dist/transformation.js

@@ -37,8 +37,12 @@ export class PathRewritingTransformation {
                 warnings,
             };
         }
-        // Build mapping from source paths to target paths
-        const mapping = buildMapping(context.items, trialResult.written, context.sourceRoot, context.targetRoot);
+        // Build mapping from source paths to target paths. Any collision
+        // warnings emitted during mapping construction (ambiguous source-path
+        // keys mapping to different targets) are merged into the conversion
+        // result warnings so the operator sees them.
+        const { mapping, warnings: mappingWarnings } = buildMapping(context.items, trialResult.written, context.sourceRoot, context.targetRoot);
+        warnings.push(...mappingWarnings);
         // Rewrite path references in content
         const rewriteResult = rewriteContent(context.items, mapping);
         // Detect orphan references using plugin-provided path patterns

package/dist/transformation.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@a16njs/engine",
-  "version": "0.7.0",
+  "version": "0.8.0",
   "description": "Conversion engine for a16n",
   "license": "AGPL-3.0",
   "author": "Texarkanine",
@@ -31,14 +31,14 @@
     "dist"
   ],
   "dependencies": {
-    "@a16njs/models": "0.12.0"
+    "@a16njs/models": "0.13.0"
   },
   "devDependencies": {
     "@types/node": "^20.0.0",
     "typescript": "^5.4.0",
     "vitest": "^2.0.0",
-    "@a16njs/plugin-cursor": "0.12.0",
-    "@a16njs/plugin-claude": "0.12.0"
+    "@a16njs/plugin-cursor": "0.13.0",
+    "@a16njs/plugin-claude": "0.13.0"
   },
   "engines": {
     "node": ">=22.0.0"