@199-bio/engram 0.7.4 → 0.8.1

package/dist/consolidation/consolidator.d.ts.map

@@ -1 +1 @@
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package/dist/index.js

@@ -10,6 +10,7 @@ import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js"
 import { CallToolRequestSchema, ListToolsRequestSchema, } from "@modelcontextprotocol/sdk/types.js";
 import path from "path";
 import os from "os";
+import fs from "fs";
 import { EngramDatabase } from "./storage/database.js";
 import { KnowledgeGraph } from "./graph/knowledge-graph.js";
 import { createRetriever } from "./retrieval/colbert.js";
@@ -21,6 +22,94 @@ const DB_PATH = process.env.ENGRAM_DB_PATH
     ? path.resolve(process.env.ENGRAM_DB_PATH.replace("~", os.homedir()))
     : path.join(os.homedir(), ".engram");
 const DB_FILE = path.join(DB_PATH, "engram.db");
+const PID_FILE = path.join(DB_PATH, "engram.pid");
+// ============ Zombie Prevention ============
+/**
+ * Kill any existing engram process and clean up stale PID file
+ */
+function cleanupZombies() {
+    try {
+        if (fs.existsSync(PID_FILE)) {
+            const oldPid = parseInt(fs.readFileSync(PID_FILE, "utf-8").trim(), 10);
+            if (oldPid && oldPid !== process.pid) {
+                try {
+                    // Check if process exists
+                    process.kill(oldPid, 0);
+                    // It exists, kill it
+                    console.error(`[Engram] Killing old instance (PID ${oldPid})`);
+                    process.kill(oldPid, "SIGTERM");
+                }
+                catch {
+                    // Process doesn't exist, that's fine
+                }
+            }
+            fs.unlinkSync(PID_FILE);
+        }
+    }
+    catch (error) {
+        console.error("[Engram] Error cleaning up zombies:", error);
+    }
+}
+/**
+ * Write our PID file
+ */
+function writePidFile() {
+    try {
+        // Ensure directory exists
+        if (!fs.existsSync(DB_PATH)) {
+            fs.mkdirSync(DB_PATH, { recursive: true });
+        }
+        fs.writeFileSync(PID_FILE, String(process.pid));
+    }
+    catch (error) {
+        console.error("[Engram] Error writing PID file:", error);
+    }
+}
+/**
+ * Clean up on exit
+ */
+function cleanup() {
+    try {
+        if (fs.existsSync(PID_FILE)) {
+            const storedPid = parseInt(fs.readFileSync(PID_FILE, "utf-8").trim(), 10);
+            if (storedPid === process.pid) {
+                fs.unlinkSync(PID_FILE);
+            }
+        }
+        if (webServer) {
+            webServer.stop();
+        }
+        if (db) {
+            db.close();
+        }
+    }
+    catch {
+        // Ignore cleanup errors
+    }
+}
+// Register signal handlers early
+process.on("SIGTERM", () => {
+    console.error("[Engram] Received SIGTERM, shutting down...");
+    cleanup();
+    process.exit(0);
+});
+process.on("SIGINT", () => {
+    console.error("[Engram] Received SIGINT, shutting down...");
+    cleanup();
+    process.exit(0);
+});
+process.on("exit", cleanup);
+// Detect when parent process (Claude) dies by monitoring stdin
+process.stdin.on("end", () => {
+    console.error("[Engram] stdin closed, parent process likely died. Shutting down...");
+    cleanup();
+    process.exit(0);
+});
+process.stdin.on("close", () => {
+    console.error("[Engram] stdin closed, shutting down...");
+    cleanup();
+    process.exit(0);
+});
 // ============ Initialize Components ============
 let db;
 let graph;
@@ -58,7 +147,7 @@ async function initialize() {
 // ============ MCP Server ============
 const server = new Server({
     name: "engram",
-    version: "0.7.2",
+    version: "0.8.0",
 }, {
     capabilities: {
         tools: {},
@@ -257,6 +346,37 @@ const TOOLS = [
             openWorldHint: true, // Calls Anthropic API for consolidation
         },
     },
+    {
+        name: "memory_feedback",
+        description: "Signal which memories from a recall were actually useful. Call AFTER using memories to answer user's question. This enables the memory system to learn which memories help together (Hebbian learning). Optional but improves memory quality over time.",
+        inputSchema: {
+            type: "object",
+            properties: {
+                recall_id: {
+                    type: "string",
+                    description: "The recall_id from the recall response",
+                },
+                useful_memory_ids: {
+                    type: "array",
+                    items: { type: "string" },
+                    description: "IDs of memories that actually helped answer the question. Empty array if none were useful.",
+                },
+                need_more: {
+                    type: "boolean",
+                    description: "Set true if the memories were insufficient and you need a deeper search with more results",
+                    default: false,
+                },
+            },
+            required: ["recall_id", "useful_memory_ids"],
+        },
+        annotations: {
+            title: "Memory Feedback",
+            readOnlyHint: false,
+            destructiveHint: false,
+            idempotentHint: true,
+            openWorldHint: false,
+        },
+    },
 ];
 // List available tools
 server.setRequestHandler(ListToolsRequestSchema, async () => ({
@@ -314,11 +434,11 @@ server.setRequestHandler(CallToolRequestSchema, async (request) => {
             }
             case "recall": {
                 const { query, limit = 5, include_graph = true } = args;
-                const results = await search.search(query, {
+                const response = await search.search(query, {
                     limit,
                     includeGraph: include_graph,
                 });
-                const formatted = results.map((r) => ({
+                const formatted = response.results.map((r) => ({
                     id: r.memory.id,
                     content: r.memory.content,
                     source: r.memory.source,
@@ -330,14 +450,24 @@ server.setRequestHandler(CallToolRequestSchema, async (request) => {
                         .map(([k]) => k)
                         .join(", "),
                 }));
+                // Format connected memories (Hebbian associations)
+                const connectedFormatted = response.connected_memories.map((c) => ({
+                    id: c.memory.id,
+                    content: c.memory.content,
+                    connected_to: c.connected_to,
+                    connection_strength: c.strength.toFixed(2),
+                }));
                 return {
                     content: [
                         {
                             type: "text",
                             text: JSON.stringify({
+                                recall_id: response.recall_id, // For memory_feedback
                                 query,
                                 results: formatted,
                                 count: formatted.length,
+                                connected_memories: connectedFormatted,
+                                hint: formatted.length > 0 ? "Call memory_feedback with useful_memory_ids after answering" : undefined,
                             }, null, 2),
                         },
                     ],
@@ -497,6 +627,105 @@ server.setRequestHandler(CallToolRequestSchema, async (request) => {
                     ],
                 };
             }
+            case "memory_feedback": {
+                const { recall_id, useful_memory_ids, need_more = false } = args;
+                // First, get the original recall to validate useful_memory_ids
+                const retrievalLog = db.getRetrievalLog(recall_id);
+                if (!retrievalLog) {
+                    return {
+                        content: [
+                            {
+                                type: "text",
+                                text: JSON.stringify({
+                                    success: false,
+                                    error: `Recall ID not found: ${recall_id}`,
+                                }),
+                            },
+                        ],
+                    };
+                }
+                // Validate: only accept IDs that were in the original recall
+                const originalIdSet = new Set(retrievalLog.memory_ids);
+                const validUsefulIds = useful_memory_ids.filter(id => originalIdSet.has(id));
+                const invalidIds = useful_memory_ids.filter(id => !originalIdSet.has(id));
+                if (invalidIds.length > 0) {
+                    console.error(`[Engram] memory_feedback: ${invalidIds.length} IDs not in original recall, ignored: ${invalidIds.join(", ")}`);
+                }
+                // Update the retrieval log with validated feedback
+                const updated = db.updateRetrievalFeedback(recall_id, validUsefulIds, need_more);
+                if (!updated) {
+                    // Should not happen since we already checked above, but handle gracefully
+                    console.error(`[Engram] memory_feedback: failed to update retrieval log ${recall_id}`);
+                    return {
+                        content: [
+                            {
+                                type: "text",
+                                text: JSON.stringify({
+                                    success: false,
+                                    error: `Failed to update feedback for: ${recall_id}`,
+                                }),
+                            },
+                        ],
+                    };
+                }
+                // If need_more is set, do an expanded search
+                if (need_more) {
+                    const expandedResponse = await search.expandSearch(recall_id);
+                    const formatted = expandedResponse.results.map((r) => ({
+                        id: r.memory.id,
+                        content: r.memory.content,
+                        source: r.memory.source,
+                        timestamp: r.memory.timestamp.toISOString(),
+                        relevance_score: r.score.toFixed(4),
+                        matched_via: Object.entries(r.sources)
+                            .filter(([, v]) => v !== undefined)
+                            .map(([k]) => k)
+                            .join(", "),
+                    }));
+                    return {
+                        content: [
+                            {
+                                type: "text",
+                                text: JSON.stringify({
+                                    success: true,
+                                    feedback_recorded: true,
+                                    useful_count: validUsefulIds.length,
+                                    expanded_search: true,
+                                    additional_results: formatted,
+                                    additional_count: formatted.length,
+                                }, null, 2),
+                            },
+                        ],
+                    };
+                }
+                // Process deferred learning if we have enough feedback
+                const unprocessed = db.getUnprocessedRetrievalLogs(50);
+                let learningApplied = 0;
+                for (const log of unprocessed) {
+                    if (log.useful_ids && log.useful_ids.length >= 2) {
+                        // Strengthen connections between useful memories
+                        db.recordCoUseful(log.useful_ids);
+                        learningApplied++;
+                    }
+                }
+                if (unprocessed.length > 0) {
+                    db.markRetrievalLogsProcessed(unprocessed.map(l => l.id));
+                }
+                return {
+                    content: [
+                        {
+                            type: "text",
+                            text: JSON.stringify({
+                                success: true,
+                                feedback_recorded: true,
+                                useful_count: validUsefulIds.length,
+                                learning_applied: learningApplied > 0,
+                                connections_strengthened: learningApplied,
+                            }, null, 2),
+                        },
+                    ],
+                };
+            }
             default:
                 throw new Error(`Unknown tool: ${name}`);
         }
@@ -516,10 +745,13 @@ server.setRequestHandler(CallToolRequestSchema, async (request) => {
 });
 // ============ Main ============
 async function main() {
+    // Kill any zombie instances before starting
+    cleanupZombies();
+    writePidFile();
     await initialize();
     const transport = new StdioServerTransport();
     await server.connect(transport);
-    console.error("[Engram] MCP server running on stdio");
+    console.error(`[Engram] MCP server running on stdio (PID ${process.pid})`);
 }
 main().catch((error) => {
     console.error("[Engram] Fatal error:", error);

package/dist/retrieval/hybrid.d.ts.map

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package/dist/storage/database.d.ts.map

@@ -1 +1 @@
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package/dist/web/chat-handler.d.ts.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@199-bio/engram",
-  "version": "0.7.4",
+  "version": "0.8.1",
   "description": "Give Claude a perfect memory. Local-first MCP server with hybrid search.",
   "type": "module",
   "main": "dist/index.js",

package/src/consolidation/consolidator.ts

@@ -112,6 +112,7 @@ interface ConsolidateOptions {
 
 export class Consolidator {
   private client: Anthropic | null = null;
+  private cachedApiKey: string | null = null;
   private db: EngramDatabase;
   private graph: KnowledgeGraph | null = null;
   private search: HybridSearch | null = null;
@@ -125,14 +126,36 @@ export class Consolidator {
     this.graph = graph || null;
     this.search = search || null;
 
+    // Initial check
+    this.ensureClient();
+  }
+
+  /**
+   * Ensure client is configured with latest API key
+   * Lazy initialization: checks for new/updated API key each call
+   */
+  private ensureClient(): Anthropic | null {
     const apiKey = getAnthropicApiKey();
-    if (apiKey) {
+
+    if (!apiKey) {
+      this.client = null;
+      this.cachedApiKey = null;
+      return null;
+    }
+
+    // Only recreate client if API key changed
+    if (apiKey !== this.cachedApiKey) {
+      console.error(`[Engram] Consolidator: API key ${this.cachedApiKey ? "updated" : "configured"}`);
       this.client = new Anthropic({ apiKey });
+      this.cachedApiKey = apiKey;
     }
+
+    return this.client;
   }
 
   isConfigured(): boolean {
-    return this.client !== null;
+    // Re-check in case API key was added after startup
+    return this.ensureClient() !== null;
   }
 
   /**
@@ -144,7 +167,8 @@ export class Consolidator {
     contradictionsFound: number;
     memoriesProcessed: number;
   }> {
-    if (!this.client) {
+    const client = this.ensureClient();
+    if (!client) {
       throw new Error("Consolidator not configured - set ANTHROPIC_API_KEY");
     }
 
@@ -221,7 +245,8 @@ export class Consolidator {
   private async consolidateBatch(
     memories: Memory[]
   ): Promise<ConsolidationResult | null> {
-    if (!this.client) return null;
+    const client = this.ensureClient();
+    if (!client) return null;
 
     // Format memories for the prompt
     const memoriesText = memories
@@ -246,7 +271,7 @@ ${memoriesText}
 Create a detailed digest that preserves all important information. Respond with JSON only.`;
 
     try {
-      const response = await this.client.messages.create({
+      const response = await client.messages.create({
         model: "claude-opus-4-5-20251101",
         max_tokens: 16000,
         temperature: 1, // Required for extended thinking
@@ -290,7 +315,8 @@ Create a detailed digest that preserves all important information. Respond with
    * Create an entity profile by consolidating all observations about an entity
    */
   async consolidateEntity(entityId: string): Promise<Digest | null> {
-    if (!this.client) {
+    const client = this.ensureClient();
+    if (!client) {
       throw new Error("Consolidator not configured - set ANTHROPIC_API_KEY");
     }
 
@@ -335,7 +361,7 @@ ${memoriesText}
 Create a rich, detailed profile. Do not summarize away important nuances. Respond with JSON only.`;
 
     try {
-      const response = await this.client.messages.create({
+      const response = await client.messages.create({
         model: "claude-opus-4-5-20251101",
         max_tokens: 16000,
         temperature: 1, // Required for extended thinking
@@ -444,7 +470,8 @@ Create a rich, detailed profile. Do not summarize away important nuances. Respon
     memoriesCreated: number;
     entitiesCreated: number;
   }> {
-    if (!this.client) {
+    const client = this.ensureClient();
+    if (!client) {
       throw new Error("Consolidator not configured - set ANTHROPIC_API_KEY");
     }
 
@@ -537,7 +564,8 @@ Create a rich, detailed profile. Do not summarize away important nuances. Respon
   private async extractMemoriesFromEpisodes(
     episodes: Episode[]
   ): Promise<EpisodeExtractionResult | null> {
-    if (!this.client) return null;
+    const client = this.ensureClient();
+    if (!client) return null;
 
     // Format conversation
     const conversationText = episodes
@@ -555,7 +583,7 @@ Respond with JSON only.`;
 
     try {
       // Use Haiku for speed/cost (no extended thinking needed)
-      const response = await this.client.messages.create({
+      const response = await client.messages.create({
         model: "claude-haiku-4-5-20251201",
         max_tokens: 4000,
         messages: [
@@ -596,6 +624,8 @@ Respond with JSON only.`;
     memoriesCreated: number;
     digestsCreated: number;
     contradictionsFound: number;
+    connectionsDecayed: number;
+    logsCleanedUp: number;
   }> {
     console.error("[Consolidator] Starting sleep cycle...");
 
@@ -607,11 +637,21 @@ Respond with JSON only.`;
     const memoryResult = await this.consolidate();
     console.error(`[Consolidator] Memories: ${memoryResult.memoriesProcessed} → ${memoryResult.digestsCreated} digests`);
 
+    // Step 3: Decay unused Hebbian connections (memories that haven't fired together recently)
+    const connectionsDecayed = this.db.decayConnections(30, 0.9);
+    console.error(`[Consolidator] Connections decayed: ${connectionsDecayed}`);
+
+    // Step 4: Clean up old retrieval logs
+    const logsCleanedUp = this.db.cleanupRetrievalLogs(7);
+    console.error(`[Consolidator] Retrieval logs cleaned: ${logsCleanedUp}`);
+
     return {
       episodesProcessed: episodeResult.episodesProcessed,
       memoriesCreated: episodeResult.memoriesCreated,
       digestsCreated: memoryResult.digestsCreated,
       contradictionsFound: memoryResult.contradictionsFound,
+      connectionsDecayed,
+      logsCleanedUp,
     };
   }
 }