youandme 0.2.1 → 0.2.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/README.md +8 -1
- data/VERSION +1 -1
- data/youandme.gemspec +2 -2
- metadata +17 -17
data/README.md
CHANGED
@@ -10,7 +10,14 @@ An unofficial Ruby library and command-line application ("youandme") for quickly
|
|
10
10
|
|
11
11
|
The primary command-line script is "youandme", which generates a simple side-by-side comparison report for two given 23andme raw data files. To generate the reports, grab a few raw 23andme data files (from 23andme.com, SNPedia etc.), and compare them like so:
|
12
12
|
|
13
|
-
|
13
|
+
youandme --directory <output_directory> --left <23andme_data_file.txt> --right <23andme_data_file.txt>
|
14
|
+
|
15
|
+
After the script completes, four plain-text files will be placed in the specified directory in the following formats:
|
16
|
+
|
17
|
+
* **report.md** MultiMarkdown version of the report.
|
18
|
+
* **report.ltx** LaTeX version of the report.
|
19
|
+
* **report.html** HTML version of the report.
|
20
|
+
* **report.css** Stylesheet for the HTML file.
|
14
21
|
|
15
22
|
For "full" files, this will take a LONG time to run. (As in, probably more than 24 hours.) I recommend breaking down the data files into chromosome-size chunks, and running each comparison through this script individually.
|
16
23
|
|
data/VERSION
CHANGED
@@ -1 +1 @@
|
|
1
|
-
0.2.
|
1
|
+
0.2.2
|
data/youandme.gemspec
CHANGED
@@ -5,11 +5,11 @@
|
|
5
5
|
|
6
6
|
Gem::Specification.new do |s|
|
7
7
|
s.name = "youandme"
|
8
|
-
s.version = "0.2.
|
8
|
+
s.version = "0.2.2"
|
9
9
|
|
10
10
|
s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
|
11
11
|
s.authors = ["Preston Lee"]
|
12
|
-
s.date = "2011-11-
|
12
|
+
s.date = "2011-11-05"
|
13
13
|
s.description = "An unofficial ruby library for quickly parsing 23andme raw data files into a plain Ruby structures for quick processing and analysis."
|
14
14
|
s.email = "conmotto@gmail.com"
|
15
15
|
s.executables = ["youandme"]
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: youandme
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.2.
|
4
|
+
version: 0.2.2
|
5
5
|
prerelease:
|
6
6
|
platform: ruby
|
7
7
|
authors:
|
@@ -9,11 +9,11 @@ authors:
|
|
9
9
|
autorequire:
|
10
10
|
bindir: bin
|
11
11
|
cert_chain: []
|
12
|
-
date: 2011-11-
|
12
|
+
date: 2011-11-05 00:00:00.000000000 Z
|
13
13
|
dependencies:
|
14
14
|
- !ruby/object:Gem::Dependency
|
15
15
|
name: getopt
|
16
|
-
requirement: &
|
16
|
+
requirement: &70267788279700 !ruby/object:Gem::Requirement
|
17
17
|
none: false
|
18
18
|
requirements:
|
19
19
|
- - ~>
|
@@ -21,10 +21,10 @@ dependencies:
|
|
21
21
|
version: 1.4.1
|
22
22
|
type: :runtime
|
23
23
|
prerelease: false
|
24
|
-
version_requirements: *
|
24
|
+
version_requirements: *70267788279700
|
25
25
|
- !ruby/object:Gem::Dependency
|
26
26
|
name: rpeg-multimarkdown
|
27
|
-
requirement: &
|
27
|
+
requirement: &70267788278660 !ruby/object:Gem::Requirement
|
28
28
|
none: false
|
29
29
|
requirements:
|
30
30
|
- - ~>
|
@@ -32,10 +32,10 @@ dependencies:
|
|
32
32
|
version: 0.1.1
|
33
33
|
type: :runtime
|
34
34
|
prerelease: false
|
35
|
-
version_requirements: *
|
35
|
+
version_requirements: *70267788278660
|
36
36
|
- !ruby/object:Gem::Dependency
|
37
37
|
name: libxslt-ruby
|
38
|
-
requirement: &
|
38
|
+
requirement: &70267788277340 !ruby/object:Gem::Requirement
|
39
39
|
none: false
|
40
40
|
requirements:
|
41
41
|
- - ~>
|
@@ -43,10 +43,10 @@ dependencies:
|
|
43
43
|
version: 1.0.8
|
44
44
|
type: :runtime
|
45
45
|
prerelease: false
|
46
|
-
version_requirements: *
|
46
|
+
version_requirements: *70267788277340
|
47
47
|
- !ruby/object:Gem::Dependency
|
48
48
|
name: shoulda
|
49
|
-
requirement: &
|
49
|
+
requirement: &70267788276580 !ruby/object:Gem::Requirement
|
50
50
|
none: false
|
51
51
|
requirements:
|
52
52
|
- - ! '>='
|
@@ -54,10 +54,10 @@ dependencies:
|
|
54
54
|
version: '0'
|
55
55
|
type: :development
|
56
56
|
prerelease: false
|
57
|
-
version_requirements: *
|
57
|
+
version_requirements: *70267788276580
|
58
58
|
- !ruby/object:Gem::Dependency
|
59
59
|
name: bundler
|
60
|
-
requirement: &
|
60
|
+
requirement: &70267788275480 !ruby/object:Gem::Requirement
|
61
61
|
none: false
|
62
62
|
requirements:
|
63
63
|
- - ~>
|
@@ -65,10 +65,10 @@ dependencies:
|
|
65
65
|
version: 1.0.0
|
66
66
|
type: :development
|
67
67
|
prerelease: false
|
68
|
-
version_requirements: *
|
68
|
+
version_requirements: *70267788275480
|
69
69
|
- !ruby/object:Gem::Dependency
|
70
70
|
name: jeweler
|
71
|
-
requirement: &
|
71
|
+
requirement: &70267788274420 !ruby/object:Gem::Requirement
|
72
72
|
none: false
|
73
73
|
requirements:
|
74
74
|
- - ~>
|
@@ -76,10 +76,10 @@ dependencies:
|
|
76
76
|
version: 1.6.4
|
77
77
|
type: :development
|
78
78
|
prerelease: false
|
79
|
-
version_requirements: *
|
79
|
+
version_requirements: *70267788274420
|
80
80
|
- !ruby/object:Gem::Dependency
|
81
81
|
name: rcov
|
82
|
-
requirement: &
|
82
|
+
requirement: &70267788273380 !ruby/object:Gem::Requirement
|
83
83
|
none: false
|
84
84
|
requirements:
|
85
85
|
- - ! '>='
|
@@ -87,7 +87,7 @@ dependencies:
|
|
87
87
|
version: '0'
|
88
88
|
type: :development
|
89
89
|
prerelease: false
|
90
|
-
version_requirements: *
|
90
|
+
version_requirements: *70267788273380
|
91
91
|
description: An unofficial ruby library for quickly parsing 23andme raw data files
|
92
92
|
into a plain Ruby structures for quick processing and analysis.
|
93
93
|
email: conmotto@gmail.com
|
@@ -131,7 +131,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
|
|
131
131
|
version: '0'
|
132
132
|
segments:
|
133
133
|
- 0
|
134
|
-
hash:
|
134
|
+
hash: 2650587707268893920
|
135
135
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
136
136
|
none: false
|
137
137
|
requirements:
|