youandme 0.2.0 → 0.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/VERSION +1 -1
- data/bin/youandme +1 -1
- data/youandme.gemspec +76 -0
- metadata +17 -16
    
        data/VERSION
    CHANGED
    
    | @@ -1 +1 @@ | |
| 1 | 
            -
            0.2. | 
| 1 | 
            +
            0.2.1
         | 
    
        data/bin/youandme
    CHANGED
    
    | @@ -55,7 +55,7 @@ unless(loader.check_file(left_file) and loader.check_file(right_file)) | |
| 55 55 | 
             
            end
         | 
| 56 56 |  | 
| 57 57 | 
             
            puts "Parsing data files... (may take a while)"
         | 
| 58 | 
            -
            max_rows =  | 
| 58 | 
            +
            max_rows = 0
         | 
| 59 59 | 
             
            left = loader.load_file(left_file, max_rows).sort{|a,b| a[:rsid] <=> b[:rsid]}
         | 
| 60 60 | 
             
            puts "\tLoaded #{left.length} SNPs from #{left_file}"
         | 
| 61 61 | 
             
            # y left[0..4]
         | 
    
        data/youandme.gemspec
    ADDED
    
    | @@ -0,0 +1,76 @@ | |
| 1 | 
            +
            # Generated by jeweler
         | 
| 2 | 
            +
            # DO NOT EDIT THIS FILE DIRECTLY
         | 
| 3 | 
            +
            # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
         | 
| 4 | 
            +
            # -*- encoding: utf-8 -*-
         | 
| 5 | 
            +
             | 
| 6 | 
            +
            Gem::Specification.new do |s|
         | 
| 7 | 
            +
              s.name = "youandme"
         | 
| 8 | 
            +
              s.version = "0.2.1"
         | 
| 9 | 
            +
             | 
| 10 | 
            +
              s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
         | 
| 11 | 
            +
              s.authors = ["Preston Lee"]
         | 
| 12 | 
            +
              s.date = "2011-11-04"
         | 
| 13 | 
            +
              s.description = "An unofficial ruby library for quickly parsing 23andme raw data files into a plain Ruby structures for quick processing and analysis."
         | 
| 14 | 
            +
              s.email = "conmotto@gmail.com"
         | 
| 15 | 
            +
              s.executables = ["youandme"]
         | 
| 16 | 
            +
              s.extra_rdoc_files = [
         | 
| 17 | 
            +
                "LICENSE.txt",
         | 
| 18 | 
            +
                "README.md"
         | 
| 19 | 
            +
              ]
         | 
| 20 | 
            +
              s.files = [
         | 
| 21 | 
            +
                ".document",
         | 
| 22 | 
            +
                "Gemfile",
         | 
| 23 | 
            +
                "Gemfile.lock",
         | 
| 24 | 
            +
                "LICENSE.txt",
         | 
| 25 | 
            +
                "README.md",
         | 
| 26 | 
            +
                "Rakefile",
         | 
| 27 | 
            +
                "VERSION",
         | 
| 28 | 
            +
                "bin/youandme",
         | 
| 29 | 
            +
                "lib/.DS_Store",
         | 
| 30 | 
            +
                "lib/youandme.rb",
         | 
| 31 | 
            +
                "lib/youandme/data_processor.rb",
         | 
| 32 | 
            +
                "lib/youandme/raw_data_file_loader.rb",
         | 
| 33 | 
            +
                "lib/youandme/report.css",
         | 
| 34 | 
            +
                "lib/youandme/report.md.erb",
         | 
| 35 | 
            +
                "lib/youandme/xhtml-toc.xslt",
         | 
| 36 | 
            +
                "test/helper.rb",
         | 
| 37 | 
            +
                "test/test_youandme.rb",
         | 
| 38 | 
            +
                "youandme.gemspec"
         | 
| 39 | 
            +
              ]
         | 
| 40 | 
            +
              s.homepage = "http://github.com/preston/youandme"
         | 
| 41 | 
            +
              s.licenses = ["Apache 2.0"]
         | 
| 42 | 
            +
              s.require_paths = ["lib"]
         | 
| 43 | 
            +
              s.rubygems_version = "1.8.11"
         | 
| 44 | 
            +
              s.summary = "Data comparison and analysis tools for 23andme raw data files."
         | 
| 45 | 
            +
             | 
| 46 | 
            +
              if s.respond_to? :specification_version then
         | 
| 47 | 
            +
                s.specification_version = 3
         | 
| 48 | 
            +
             | 
| 49 | 
            +
                if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
         | 
| 50 | 
            +
                  s.add_runtime_dependency(%q<getopt>, ["~> 1.4.1"])
         | 
| 51 | 
            +
                  s.add_runtime_dependency(%q<rpeg-multimarkdown>, ["~> 0.1.1"])
         | 
| 52 | 
            +
                  s.add_runtime_dependency(%q<libxslt-ruby>, ["~> 1.0.8"])
         | 
| 53 | 
            +
                  s.add_development_dependency(%q<shoulda>, [">= 0"])
         | 
| 54 | 
            +
                  s.add_development_dependency(%q<bundler>, ["~> 1.0.0"])
         | 
| 55 | 
            +
                  s.add_development_dependency(%q<jeweler>, ["~> 1.6.4"])
         | 
| 56 | 
            +
                  s.add_development_dependency(%q<rcov>, [">= 0"])
         | 
| 57 | 
            +
                else
         | 
| 58 | 
            +
                  s.add_dependency(%q<getopt>, ["~> 1.4.1"])
         | 
| 59 | 
            +
                  s.add_dependency(%q<rpeg-multimarkdown>, ["~> 0.1.1"])
         | 
| 60 | 
            +
                  s.add_dependency(%q<libxslt-ruby>, ["~> 1.0.8"])
         | 
| 61 | 
            +
                  s.add_dependency(%q<shoulda>, [">= 0"])
         | 
| 62 | 
            +
                  s.add_dependency(%q<bundler>, ["~> 1.0.0"])
         | 
| 63 | 
            +
                  s.add_dependency(%q<jeweler>, ["~> 1.6.4"])
         | 
| 64 | 
            +
                  s.add_dependency(%q<rcov>, [">= 0"])
         | 
| 65 | 
            +
                end
         | 
| 66 | 
            +
              else
         | 
| 67 | 
            +
                s.add_dependency(%q<getopt>, ["~> 1.4.1"])
         | 
| 68 | 
            +
                s.add_dependency(%q<rpeg-multimarkdown>, ["~> 0.1.1"])
         | 
| 69 | 
            +
                s.add_dependency(%q<libxslt-ruby>, ["~> 1.0.8"])
         | 
| 70 | 
            +
                s.add_dependency(%q<shoulda>, [">= 0"])
         | 
| 71 | 
            +
                s.add_dependency(%q<bundler>, ["~> 1.0.0"])
         | 
| 72 | 
            +
                s.add_dependency(%q<jeweler>, ["~> 1.6.4"])
         | 
| 73 | 
            +
                s.add_dependency(%q<rcov>, [">= 0"])
         | 
| 74 | 
            +
              end
         | 
| 75 | 
            +
            end
         | 
| 76 | 
            +
             | 
    
        metadata
    CHANGED
    
    | @@ -1,7 +1,7 @@ | |
| 1 1 | 
             
            --- !ruby/object:Gem::Specification
         | 
| 2 2 | 
             
            name: youandme
         | 
| 3 3 | 
             
            version: !ruby/object:Gem::Version
         | 
| 4 | 
            -
              version: 0.2. | 
| 4 | 
            +
              version: 0.2.1
         | 
| 5 5 | 
             
              prerelease: 
         | 
| 6 6 | 
             
            platform: ruby
         | 
| 7 7 | 
             
            authors:
         | 
| @@ -13,7 +13,7 @@ date: 2011-11-04 00:00:00.000000000 Z | |
| 13 13 | 
             
            dependencies:
         | 
| 14 14 | 
             
            - !ruby/object:Gem::Dependency
         | 
| 15 15 | 
             
              name: getopt
         | 
| 16 | 
            -
              requirement: & | 
| 16 | 
            +
              requirement: &70332950701940 !ruby/object:Gem::Requirement
         | 
| 17 17 | 
             
                none: false
         | 
| 18 18 | 
             
                requirements:
         | 
| 19 19 | 
             
                - - ~>
         | 
| @@ -21,10 +21,10 @@ dependencies: | |
| 21 21 | 
             
                    version: 1.4.1
         | 
| 22 22 | 
             
              type: :runtime
         | 
| 23 23 | 
             
              prerelease: false
         | 
| 24 | 
            -
              version_requirements: * | 
| 24 | 
            +
              version_requirements: *70332950701940
         | 
| 25 25 | 
             
            - !ruby/object:Gem::Dependency
         | 
| 26 26 | 
             
              name: rpeg-multimarkdown
         | 
| 27 | 
            -
              requirement: & | 
| 27 | 
            +
              requirement: &70332950700840 !ruby/object:Gem::Requirement
         | 
| 28 28 | 
             
                none: false
         | 
| 29 29 | 
             
                requirements:
         | 
| 30 30 | 
             
                - - ~>
         | 
| @@ -32,10 +32,10 @@ dependencies: | |
| 32 32 | 
             
                    version: 0.1.1
         | 
| 33 33 | 
             
              type: :runtime
         | 
| 34 34 | 
             
              prerelease: false
         | 
| 35 | 
            -
              version_requirements: * | 
| 35 | 
            +
              version_requirements: *70332950700840
         | 
| 36 36 | 
             
            - !ruby/object:Gem::Dependency
         | 
| 37 37 | 
             
              name: libxslt-ruby
         | 
| 38 | 
            -
              requirement: & | 
| 38 | 
            +
              requirement: &70332950699500 !ruby/object:Gem::Requirement
         | 
| 39 39 | 
             
                none: false
         | 
| 40 40 | 
             
                requirements:
         | 
| 41 41 | 
             
                - - ~>
         | 
| @@ -43,10 +43,10 @@ dependencies: | |
| 43 43 | 
             
                    version: 1.0.8
         | 
| 44 44 | 
             
              type: :runtime
         | 
| 45 45 | 
             
              prerelease: false
         | 
| 46 | 
            -
              version_requirements: * | 
| 46 | 
            +
              version_requirements: *70332950699500
         | 
| 47 47 | 
             
            - !ruby/object:Gem::Dependency
         | 
| 48 48 | 
             
              name: shoulda
         | 
| 49 | 
            -
              requirement: & | 
| 49 | 
            +
              requirement: &70332950698760 !ruby/object:Gem::Requirement
         | 
| 50 50 | 
             
                none: false
         | 
| 51 51 | 
             
                requirements:
         | 
| 52 52 | 
             
                - - ! '>='
         | 
| @@ -54,10 +54,10 @@ dependencies: | |
| 54 54 | 
             
                    version: '0'
         | 
| 55 55 | 
             
              type: :development
         | 
| 56 56 | 
             
              prerelease: false
         | 
| 57 | 
            -
              version_requirements: * | 
| 57 | 
            +
              version_requirements: *70332950698760
         | 
| 58 58 | 
             
            - !ruby/object:Gem::Dependency
         | 
| 59 59 | 
             
              name: bundler
         | 
| 60 | 
            -
              requirement: & | 
| 60 | 
            +
              requirement: &70332950697640 !ruby/object:Gem::Requirement
         | 
| 61 61 | 
             
                none: false
         | 
| 62 62 | 
             
                requirements:
         | 
| 63 63 | 
             
                - - ~>
         | 
| @@ -65,10 +65,10 @@ dependencies: | |
| 65 65 | 
             
                    version: 1.0.0
         | 
| 66 66 | 
             
              type: :development
         | 
| 67 67 | 
             
              prerelease: false
         | 
| 68 | 
            -
              version_requirements: * | 
| 68 | 
            +
              version_requirements: *70332950697640
         | 
| 69 69 | 
             
            - !ruby/object:Gem::Dependency
         | 
| 70 70 | 
             
              name: jeweler
         | 
| 71 | 
            -
              requirement: & | 
| 71 | 
            +
              requirement: &70332950696580 !ruby/object:Gem::Requirement
         | 
| 72 72 | 
             
                none: false
         | 
| 73 73 | 
             
                requirements:
         | 
| 74 74 | 
             
                - - ~>
         | 
| @@ -76,10 +76,10 @@ dependencies: | |
| 76 76 | 
             
                    version: 1.6.4
         | 
| 77 77 | 
             
              type: :development
         | 
| 78 78 | 
             
              prerelease: false
         | 
| 79 | 
            -
              version_requirements: * | 
| 79 | 
            +
              version_requirements: *70332950696580
         | 
| 80 80 | 
             
            - !ruby/object:Gem::Dependency
         | 
| 81 81 | 
             
              name: rcov
         | 
| 82 | 
            -
              requirement: & | 
| 82 | 
            +
              requirement: &70332950695540 !ruby/object:Gem::Requirement
         | 
| 83 83 | 
             
                none: false
         | 
| 84 84 | 
             
                requirements:
         | 
| 85 85 | 
             
                - - ! '>='
         | 
| @@ -87,7 +87,7 @@ dependencies: | |
| 87 87 | 
             
                    version: '0'
         | 
| 88 88 | 
             
              type: :development
         | 
| 89 89 | 
             
              prerelease: false
         | 
| 90 | 
            -
              version_requirements: * | 
| 90 | 
            +
              version_requirements: *70332950695540
         | 
| 91 91 | 
             
            description: An unofficial ruby library for quickly parsing 23andme raw data files
         | 
| 92 92 | 
             
              into a plain Ruby structures for quick processing and analysis.
         | 
| 93 93 | 
             
            email: conmotto@gmail.com
         | 
| @@ -115,6 +115,7 @@ files: | |
| 115 115 | 
             
            - lib/youandme/xhtml-toc.xslt
         | 
| 116 116 | 
             
            - test/helper.rb
         | 
| 117 117 | 
             
            - test/test_youandme.rb
         | 
| 118 | 
            +
            - youandme.gemspec
         | 
| 118 119 | 
             
            homepage: http://github.com/preston/youandme
         | 
| 119 120 | 
             
            licenses:
         | 
| 120 121 | 
             
            - Apache 2.0
         | 
| @@ -130,7 +131,7 @@ required_ruby_version: !ruby/object:Gem::Requirement | |
| 130 131 | 
             
                  version: '0'
         | 
| 131 132 | 
             
                  segments:
         | 
| 132 133 | 
             
                  - 0
         | 
| 133 | 
            -
                  hash: - | 
| 134 | 
            +
                  hash: -2773417468894919501
         | 
| 134 135 | 
             
            required_rubygems_version: !ruby/object:Gem::Requirement
         | 
| 135 136 | 
             
              none: false
         | 
| 136 137 | 
             
              requirements:
         |