yinspire 0.1.0

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Files changed (78) hide show
  1. data/README +24 -0
  2. data/bench/pq/Makefile +5 -0
  3. data/bench/pq/bench.cc +321 -0
  4. data/bench/pq/bench.rb +125 -0
  5. data/bench/pq/bench_binaryheap.h +46 -0
  6. data/bench/pq/bench_calendarqueue.h +58 -0
  7. data/bench/pq/bench_pairingheap.h +61 -0
  8. data/bench/pq/bench_stlpq.h +46 -0
  9. data/bench/pq/benchmark.h +225 -0
  10. data/bench/pq/distribution.h +93 -0
  11. data/bench/pq/make.rb +24 -0
  12. data/bin/yinspire +186 -0
  13. data/examples/nets/gereon2005.c.json +93723 -0
  14. data/examples/nets/gereon2005.yin +232650 -0
  15. data/examples/nets/skorpion.graphml +396 -0
  16. data/examples/nets/spiketrains_angle_180.txt +8 -0
  17. data/lib/Algorithms/Array.h +52 -0
  18. data/lib/Algorithms/BinaryHeap.h +265 -0
  19. data/lib/Algorithms/CalendarQueue.h +257 -0
  20. data/lib/Algorithms/IndexedBinaryHeap.h +90 -0
  21. data/lib/Algorithms/PairingHeap.h +169 -0
  22. data/lib/Allocators/ChunkedFreelistAllocator.h +96 -0
  23. data/lib/Allocators/MemoryAllocator.h +45 -0
  24. data/lib/Allocators/RubyMemoryAllocator.h +37 -0
  25. data/lib/Yinspire.rb +69 -0
  26. data/lib/Yinspire/All.rb +10 -0
  27. data/lib/Yinspire/Core/NeuralEntity.rb +133 -0
  28. data/lib/Yinspire/Core/Neuron.rb +162 -0
  29. data/lib/Yinspire/Core/Scheduling/NeuralEntity.rb +123 -0
  30. data/lib/Yinspire/Core/Scheduling/Simulator.rb +94 -0
  31. data/lib/Yinspire/Core/Simulator.rb +36 -0
  32. data/lib/Yinspire/Core/StimuliMixin.rb +103 -0
  33. data/lib/Yinspire/Core/Stimulus.rb +25 -0
  34. data/lib/Yinspire/Core/Synapse.rb +64 -0
  35. data/lib/Yinspire/Dumpers/Dumper.rb +19 -0
  36. data/lib/Yinspire/Dumpers/Dumper_Dot.rb +28 -0
  37. data/lib/Yinspire/Loaders/GraphML.rb +84 -0
  38. data/lib/Yinspire/Loaders/Loader.rb +31 -0
  39. data/lib/Yinspire/Loaders/Loader_GraphML.rb +97 -0
  40. data/lib/Yinspire/Loaders/Loader_JSON.rb +181 -0
  41. data/lib/Yinspire/Loaders/Loader_Spike.rb +42 -0
  42. data/lib/Yinspire/Loaders/Loader_Yin.rb +62 -0
  43. data/lib/Yinspire/Loaders/YinScanner.rb +247 -0
  44. data/lib/Yinspire/Models/Neuron_Base.rb +38 -0
  45. data/lib/Yinspire/Models/Neuron_Input.rb +12 -0
  46. data/lib/Yinspire/Models/Neuron_InputOutput.rb +39 -0
  47. data/lib/Yinspire/Models/Neuron_Output.rb +15 -0
  48. data/lib/Yinspire/Models/Neuron_SRM01.rb +50 -0
  49. data/lib/Yinspire/Models/Neuron_SRM02.rb +64 -0
  50. data/lib/Yinspire/Models/Synapse_Hebb.rb +67 -0
  51. data/pure_cpp/Makefile +22 -0
  52. data/pure_cpp/README +2 -0
  53. data/pure_cpp/src/algo/binary_heap.h +277 -0
  54. data/pure_cpp/src/algo/indexed_binary_heap.h +90 -0
  55. data/pure_cpp/src/json/json.cc +542 -0
  56. data/pure_cpp/src/json/json.h +182 -0
  57. data/pure_cpp/src/json/json_parser.cc +685 -0
  58. data/pure_cpp/src/json/json_parser.h +15 -0
  59. data/pure_cpp/src/json/json_parser.rl +213 -0
  60. data/pure_cpp/src/main.cc +49 -0
  61. data/pure_cpp/src/memory_allocator.h +45 -0
  62. data/pure_cpp/src/neural_entity.cc +208 -0
  63. data/pure_cpp/src/neural_entity.h +243 -0
  64. data/pure_cpp/src/neuron.cc +136 -0
  65. data/pure_cpp/src/neuron.h +70 -0
  66. data/pure_cpp/src/neuron_srm_01.cc +77 -0
  67. data/pure_cpp/src/neuron_srm_01.h +36 -0
  68. data/pure_cpp/src/simulator.cc +151 -0
  69. data/pure_cpp/src/simulator.h +116 -0
  70. data/pure_cpp/src/synapse.cc +117 -0
  71. data/pure_cpp/src/synapse.h +60 -0
  72. data/pure_cpp/src/types.h +18 -0
  73. data/run.rb +68 -0
  74. data/tools/conv_jsonc_to_yin.rb +165 -0
  75. data/tools/converter.rb +93 -0
  76. data/tools/json_writer.rb +122 -0
  77. data/yinspire.gemspec +20 -0
  78. metadata +156 -0
data/yinspire.gemspec ADDED
@@ -0,0 +1,20 @@
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+ require 'rubygems'
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+
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+ spec = Gem::Specification.new do |s|
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+ s.name = "yinspire"
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+ s.version = "0.1.0"
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+ s.summary = "An efficient Spiking Neural Net Simulator"
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+ s.files = Dir['**/*']
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+ s.add_dependency('cplus2ruby', '>= 1.1.1')
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+ s.executables = ['yinspire']
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+
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+ s.author = "Michael Neumann"
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+ s.email = "mneumann@ntecs.de"
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+ s.homepage = "http://www.ntecs.de/projects/yinspire/"
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+ s.rubyforge_project = "yinspire"
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+ end
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+
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+ if __FILE__ == $0
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+ Gem::manage_gems
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+ Gem::Builder.new(spec).build
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+ end
metadata ADDED
@@ -0,0 +1,156 @@
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+ --- !ruby/object:Gem::Specification
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+ name: yinspire
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+ version: !ruby/object:Gem::Version
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+ version: 0.1.0
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+ platform: ruby
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+ authors:
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+ - Michael Neumann
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+ autorequire:
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+ bindir: bin
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+ cert_chain: []
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+
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+ date: 2008-03-31 00:00:00 +02:00
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+ default_executable:
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+ dependencies:
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+ - !ruby/object:Gem::Dependency
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+ name: cplus2ruby
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+ version_requirement:
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: 1.1.1
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+ version:
24
+ description:
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+ email: mneumann@ntecs.de
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+ executables:
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+ - yinspire
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+ extensions: []
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+
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+ extra_rdoc_files: []
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+
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+ files:
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+ - bench
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+ - bench/pq
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+ - bench/pq/bench_pairingheap.h
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+ - bench/pq/bench_binaryheap.h
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+ - bench/pq/bench.rb
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+ - bench/pq/bench_calendarqueue.h
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+ - bench/pq/Makefile
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+ - bench/pq/distribution.h
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+ - bench/pq/make.rb
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+ - bench/pq/bench_stlpq.h
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+ - bench/pq/bench.cc
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+ - bench/pq/benchmark.h
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+ - yinspire.gemspec
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+ - pure_cpp
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+ - pure_cpp/src
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+ - pure_cpp/src/algo
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+ - pure_cpp/src/algo/indexed_binary_heap.h
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+ - pure_cpp/src/algo/binary_heap.h
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+ - pure_cpp/src/neuron.cc
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+ - pure_cpp/src/neural_entity.cc
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+ - pure_cpp/src/neuron.h
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+ - pure_cpp/src/simulator.h
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+ - pure_cpp/src/neuron_srm_01.h
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+ - pure_cpp/src/neural_entity.h
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+ - pure_cpp/src/memory_allocator.h
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+ - pure_cpp/src/synapse.h
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+ - pure_cpp/src/main.cc
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+ - pure_cpp/src/synapse.cc
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+ - pure_cpp/src/json
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+ - pure_cpp/src/json/json_parser.rl
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+ - pure_cpp/src/json/json_parser.h
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+ - pure_cpp/src/json/json.cc
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+ - pure_cpp/src/json/json.h
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+ - pure_cpp/src/json/json_parser.cc
67
+ - pure_cpp/src/neuron_srm_01.cc
68
+ - pure_cpp/src/simulator.cc
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+ - pure_cpp/src/types.h
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+ - pure_cpp/Makefile
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+ - pure_cpp/README
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+ - lib
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+ - lib/Allocators
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+ - lib/Allocators/MemoryAllocator.h
75
+ - lib/Allocators/ChunkedFreelistAllocator.h
76
+ - lib/Allocators/RubyMemoryAllocator.h
77
+ - lib/Yinspire.rb
78
+ - lib/Yinspire
79
+ - lib/Yinspire/Models
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+ - lib/Yinspire/Models/Neuron_Base.rb
81
+ - lib/Yinspire/Models/Synapse_Hebb.rb
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+ - lib/Yinspire/Models/Neuron_Input.rb
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+ - lib/Yinspire/Models/Neuron_Output.rb
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+ - lib/Yinspire/Models/Neuron_InputOutput.rb
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+ - lib/Yinspire/Models/Neuron_SRM01.rb
86
+ - lib/Yinspire/Models/Neuron_SRM02.rb
87
+ - lib/Yinspire/Core
88
+ - lib/Yinspire/Core/StimuliMixin.rb
89
+ - lib/Yinspire/Core/NeuralEntity.rb
90
+ - lib/Yinspire/Core/Scheduling
91
+ - lib/Yinspire/Core/Scheduling/Simulator.rb
92
+ - lib/Yinspire/Core/Scheduling/NeuralEntity.rb
93
+ - lib/Yinspire/Core/Synapse.rb
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+ - lib/Yinspire/Core/Neuron.rb
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+ - lib/Yinspire/Core/Simulator.rb
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+ - lib/Yinspire/Core/Stimulus.rb
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+ - lib/Yinspire/Dumpers
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+ - lib/Yinspire/Dumpers/Dumper.rb
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+ - lib/Yinspire/Dumpers/Dumper_Dot.rb
100
+ - lib/Yinspire/Loaders
101
+ - lib/Yinspire/Loaders/Loader_Yin.rb
102
+ - lib/Yinspire/Loaders/Loader_GraphML.rb
103
+ - lib/Yinspire/Loaders/Loader.rb
104
+ - lib/Yinspire/Loaders/YinScanner.rb
105
+ - lib/Yinspire/Loaders/GraphML.rb
106
+ - lib/Yinspire/Loaders/Loader_Spike.rb
107
+ - lib/Yinspire/Loaders/Loader_JSON.rb
108
+ - lib/Yinspire/All.rb
109
+ - lib/Algorithms
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+ - lib/Algorithms/IndexedBinaryHeap.h
111
+ - lib/Algorithms/Array.h
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+ - lib/Algorithms/PairingHeap.h
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+ - lib/Algorithms/CalendarQueue.h
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+ - lib/Algorithms/BinaryHeap.h
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+ - bin
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+ - bin/yinspire
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+ - README
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+ - run.rb
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+ - examples
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+ - examples/nets
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+ - examples/nets/gereon2005.c.json
122
+ - examples/nets/spiketrains_angle_180.txt
123
+ - examples/nets/skorpion.graphml
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+ - examples/nets/gereon2005.yin
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+ - tools
126
+ - tools/converter.rb
127
+ - tools/json_writer.rb
128
+ - tools/conv_jsonc_to_yin.rb
129
+ has_rdoc: false
130
+ homepage: http://www.ntecs.de/projects/yinspire/
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+ post_install_message:
132
+ rdoc_options: []
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+
134
+ require_paths:
135
+ - lib
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+ required_ruby_version: !ruby/object:Gem::Requirement
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+ requirements:
138
+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: "0"
141
+ version:
142
+ required_rubygems_version: !ruby/object:Gem::Requirement
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+ requirements:
144
+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: "0"
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+ version:
148
+ requirements: []
149
+
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+ rubyforge_project: yinspire
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+ rubygems_version: 1.1.0
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+ signing_key:
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+ specification_version: 2
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+ summary: An efficient Spiking Neural Net Simulator
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+ test_files: []
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+