y_petri 2.1.24 → 2.1.25

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 11b347e148cffde329b5fd9e3fb104f302e4066a
-  data.tar.gz: 37450ab4794d26f0af7ba7055fa8ffe8d59975d4
+  metadata.gz: 030fcecf74aac2f5368653e8da16153bcf2e7049
+  data.tar.gz: 71a2bf7fa5ad36779ae3402ac4bf6a80478a971e
 SHA512:
-  metadata.gz: 62f0f1af0ad89d1db56f134cadbc3d23065740e4967c4771392cfc341c91e2cf070e3e449c2beaa337bb2ae76b47ed51d87cc5fbf9533383ce8d772cf56ede3a
-  data.tar.gz: 65dd95f028636d47da4d9068938825845eefc32117e9151afbe60be6dd0092e2e51cfff1deb341f60a9ed397a8f826825269dd12d337aa3e8307a2607e2454f4
+  metadata.gz: df9f49e6fbcb9727109a565b06465fb172a4bba0f1fc3762175cc9f4f8a790257eb640ff46cbe998fd58ada72dfe58e31d726bb171da16e2e0ae88b7996c19c8
+  data.tar.gz: 5046af4b8050a2169d402be60e805bebbe9b9909a3158170816c57b499e1c8ffc20d79824cde399269293f6be3ebac2788ebfa62f95247bb4c69c70cac9802ef

data/README.md

@@ -55,13 +55,11 @@ We can now play the _token_ _game_:
 ## Advanced usage
 
 A Petri net is mostly used as a wiring diagram of some real-world system. Such
-Petri net can then be used to generate (implicitly or explicitly) a more specific
-simulation of that real-world system. This is represented by `YPetri::Simulation`
-class. If a Petri net with only _timed_ transitions is considered, it can then
-be used to generate (implicitly or explicitly) a system of ordinary differential
-equations (ODE). A Simulation class instance generated from such Petri net can
-then be used to eg. solve the initial value problem by numeric integration of the
-ODE system using one of the available numerical methods:
+Petri net can then be used to generate its simulation -- represented by
+`YPetri::Simulation` class. A Petri net consisting of only _timed_ transitions
+can be used to generate (implicitly or explicitly) a system of ordinary
+differential equations (ODE). A simulation generated from such Petri net can
+then be used to solve (eg.) the initial value problem by numeric methods:
 ```ruby
   # Start a fresh irb session!
   require 'y_petri'

data/lib/y_petri/core/timed/gillespie.rb

@@ -19,17 +19,17 @@ module YPetri::Core::Timed::Gillespie
   # Makes a stochastic number of Gillespie steps necessary to span the period Δt.
   # 
   def step! Δt=simulation.step
-    current_time = simulation.time
-    target_time = current_time + Δt
-    @gillespie_time = current_time
+    @gillespie_time = curr_time = simulation.time
+    target_time = curr_time + Δt
     propensities = propensity_vector_TS
     puts "Propensity vector TS is:"
     Kernel::p propensities
-    gillespie_update_next_firing_time( propensities )
-    until ( @gillespie_next_firing_time > target_time )
+    update_next_gillespie_time( propensities )
+    until ( @next_gillespie_time > target_time )
       gillespie_step!
+      note_state_change
       propensities = propensity_vector_TS
-      gillespie_update_next_firing_time( propensities )
+      update_next_gillespie_time( propensities )
     end
   end
 
@@ -41,8 +41,8 @@ module YPetri::Core::Timed::Gillespie
 
   # This method updates next firing time given propensities.
   # 
-  def gillespie_update_next_firing_time( propensities )
-    @gillespie_next_firing_time =
+  def update_next_gillespie_time( propensities )
+    @next_gillespie_time =
       @gillespie_time + gillespie_delta_time( propensities )
   end
 

data/lib/y_petri/version.rb

@@ -1,4 +1,4 @@
 module YPetri
-  VERSION = "2.1.24"
+  VERSION = "2.1.25"
   DEBUG = false
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: y_petri
 version: !ruby/object:Gem::Version
-  version: 2.1.24
+  version: 2.1.25
 platform: ruby
 authors:
 - boris
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2013-08-19 00:00:00.000000000 Z
+date: 2013-08-20 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: y_support