xml_jats_resolver 0.2.0 → 0.3.0

checksums.yaml

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data/.gitignore

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+.DS_Store

data/CHANGELOG.md

@@ -1,3 +1,7 @@
+## 0.3.0
+
+* Add Atypon DTDs: v1.1.1
+
 ## 0.2.0
 
 * Add Atypon DTDs: 3.0.1, 3.0.4 and 3.0.5

data/lib/dtd/atypon/v1.1.1/dtd/Atypon-Issue-Xml.dtd

@@ -0,0 +1,233 @@
+<!-- ============================================================= -->
+<!--  MODULE:    Journal Archiving DTD Customize Content and       -->
+<!--             Attributes Module                                 -->
+<!--  VERSION:   ANSI/NISO JATS Version 1.0 (Z39.96-2012)          -->
+<!--             Atypon Customization                              -->
+<!--  DATE:      August 2012                                       -->
+<!--                                                               -->
+<!--    Created from, and fully compatible with, the ANSI/NISO     -->
+<!--    Z39.96 Journal Article Tag Suite (JATS).                   -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//Atypon//DTD Atypon JATS Journal Archiving and Interchange Issue XML DTD v1.1 20160222//EN"
+Delivered as file "Atypon-Issue-Xml.dtd"                      -->
+<!-- ============================================================= -->
+
+<!ENTITY % archive-oasis-custom-modules.ent PUBLIC
+"-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD with OASIS Tables DTD-Specific Modules v1.1 20151215//EN"
+"JATS-archive-oasis-custom-modules1.ent"                             >
+%archive-oasis-custom-modules.ent;
+
+<!ENTITY % modules.ent PUBLIC
+"-//NLM//DTD JATS (Z39.96) Archiving and Interchange DTD Suite Module of Modules v1.1 20151215//EN"
+"JATS-modules1.ent"                                                  >
+%modules.ent;
+
+<!-- ============================================================= -->
+<!--                    CUSTOMIZATION MODULES INVOKED              -->
+<!--                    Note: These modules must be called after   -->
+<!--                    all Module of Modules but before any other -->
+<!--                    modules. Unlike any other grouping, order  -->
+<!--                    of these modules matters.                  -->
+<!-- ============================================================= -->
+
+<!--                    DEFINE NISO ACCESS AND INDICATORS (RP-22-1015)-->
+<!--                    Set all Parameter Entities needed by the
+                        NISO ALI licensing elements.
+                        This module is invoked by each DTD.        -->
+%JATS-ali-namespace.ent;
+
+<!--                    DEFINE OASIS NAMESPACE ATTRIBUTE AND PREFIX-->
+<!--                    Names the module defines the OASIS CALS
+                        Exchange Model namespace, prefix, and
+                        pseudo-attribute @xmlns and all the
+			element qnames for CALS Tables.            -->
+%JATS-oasis-namespace.ent;			
+
+<!--                    DTD-SPECIFIC CLASS CUSTOMIZATIONS MODULE   -->
+<!--                    Names the module that holds the DTD-specific
+                        class definitions for the Journal Archiving
+                        and Interchange DTD that over-rides the
+			Suite defaults.                            -->
+%archive-oasis-custom-classes.ent;
+
+<!--                    DEFAULT ELEMENT CLASSES MODULE             -->
+<!--                    Names the module that holds the standard
+                        class definitions for the Journal Archiving
+                        and Interchange DTD Suite.                 -->
+%default-classes.ent;
+
+<!--                    DTD-SPECIFIC MIX CUSTOMIZATIONS MODULE     -->
+<!--                    Set up the Parameter Entities and element
+                        class definitions that will be used to
+                        over-ride some element mixes in this DTD.  -->
+%archivecustom-mixes.ent;
+
+<!--                    DEFAULT MIX CUSTOMIZATIONS MODULE          -->
+<!--                    Names the module that holds the standard
+                        mix definitions for the Journal Archiving
+                        and Interchange DTD Suite.                 -->
+%default-mixes.ent;
+
+<!-- ============================================================= -->
+<!--                JATS ELEMENTS RE-DEFINITION                    -->
+<!-- ============================================================= -->
+
+<!--  ISSUE TITLE ELEMENTS                                         -->
+<!--  Elements for use in the <issue-title> element  of Issue XML  -->
+<!ENTITY % issue-title-elements
+                     "| %all-phrase; | %break.class;"                >
+<!-- ============================================================= -->
+
+<!--                    DTD-SPECIFIC MODELS/ATTRIBUTES CUSTOMIZATIONS 
+                        MODULE                                     -->
+<!--                    Names the module that holds the over-rides
+                        of content models, attribute lists, elements
+                        lists to be used in content models, and
+                        attribute values. These are DTD-specific.  -->
+%archivecustom-models.ent;
+
+<!-- ============================================================= -->
+<!--                    COMMON (SHARED) ELEMENTS MODULE INVOKED    -->
+<!-- ============================================================= -->
+
+<!--                    COMMON (SHARED) DECLARATIONS               -->
+<!--                    Declarations for elements, attributes, 
+                        entities, and Notations that are shared by
+                        more than one class module. Note: Must be 
+                        called before any of the class modules.    -->
+%common.ent;
+
+<!-- ============================================================= -->
+<!--                   JOURNAL ARTICLE CLASS ELEMENTS              -->
+<!-- ============================================================= -->
+
+<!--                    ARTICLE METADATA ELEMENTS                  -->
+%articlemeta.ent;
+
+<!--                    DISPLAY (GRAPHICAL) ELEMENTS               -->
+%display.ent;
+
+<!--                    FORMATTING ELEMENT CLASSES                 -->
+<!--                    Elements that change rendition/display.    -->
+%format.ent;
+
+<!--                    JOURNAL METADATA ELEMENTS                  -->
+%journalmeta.ent;
+
+<!--                    LINK CLASS ELEMENTS                        -->
+%link.ent;
+
+<!--                    LIST CLASS ELEMENTS                        -->
+%list.ent;
+
+<!--                    PARAGRAPH-LEVEL ELEMENTS                   -->
+%para.ent;
+
+<!--                    PHRASE-LEVEL ELEMENTS                      -->
+%phrase.ent;
+
+<!--                    NOTATION ELEMENTS                          -->
+%notat.ent;
+
+<!--                    MATH ELEMENTS                              -->
+%math.ent;
+
+<!--                    SPECIAL CHARACTERS DECLARATIONS            -->
+<!--                    Standard XML special character entities 
+                        used in this DTD                           -->
+%xmlspecchars.ent;
+
+<!--                    CUSTOM SPECIAL CHARACTERS DECLARATIONS     -->
+<!--                    Custom special character entities created 
+                        specifically for use in this DTD Suite     -->
+%chars.ent;
+
+<!-- ============================================================= -->
+<!--                    TOP-LEVEL ISSUE-XML DEFINITION             -->
+<!-- ============================================================= -->
+
+<!ELEMENT issue-xml	( journal-meta?, issue-meta, toc* )          >
+
+<!ENTITY % issue-xml-atts 
+                     "order         NMTOKEN              #IMPLIED
+                      intended-date CDATA                #IMPLIED
+                      xml:lang      NMTOKEN              'en'
+                      xmlns:xlink   CDATA                #FIXED
+		                    'http://www.w3.org/1999/xlink'"  > 
+			  
+<!ATTLIST issue-xml %issue-xml-atts;                                 >
+
+<!-- ============================================================= -->
+<!--                  ISSUE METADATA ELEMENT DEFINITION            -->
+<!-- ============================================================= -->
+
+<!ELEMENT issue-meta ( contrib-group*, author-notes?,
+                       pub-date*,
+                       series-title*, series-text?,
+                       volume*, volume-id*, volume-series?,
+                       issue*, issue-id*, issue-title*,
+                       issue-sponsor*, issue-part?,
+                       volume-issue-group*, isbn*, supplement?,
+                       fpage?, lpage?, page-range?,
+                       supplementary-material*, history?,
+                       copyright-statement?, copyright-year?,
+		       permissions?, self-uri*, related-object*,
+                       kwd-group*, funding-group*, conference*,
+                       counts?, custom-meta-group? )                 > 
+
+<!ENTITY  % issue-types
+           "(normal|ahead-of-print|just-accepted|forthcoming|news|part|volume-suppl|special|errata|letters|proofing|virtual|submitted)">
+
+<!ATTLIST issue-meta issue-type %issue-types; "normal"               >
+
+<!-- ============================================================= -->
+<!--                TABLE OF CONTENTS ELEMENTS DEFINITION          -->
+<!-- ============================================================= -->
+
+<!ELEMENT toc ( cover?,
+                 ( issue-subject-group | p | issue-article-meta )* ) >
+
+<!ENTITY % toc-types "(page-order|subject-heading-order|page-latin-numeric-order|page-numeric-latin-order)">
+
+<!ENTITY % toc-atts
+          "xml:lang   NMTOKEN                             #IMPLIED 
+           toc-type   %toc-types;                         #IMPLIED"  > 
+ 
+<!ATTLIST toc %toc-atts;                                             >
+
+<!ELEMENT cover ( graphic* | caption )                               >
+
+<!ENTITY % issue-article-meta-model
+          "( article-id+, title-group?,
+           ( contrib-group | aff | %x.class; )*, author-notes?,
+           ( (fpage?, lpage?, page-range?) | elocation-id )?,
+           ( %address-link.class; | product | supplementary-material )*,
+           history?, self-uri*, related-article*,
+           abstract*, trans-abstract*, toc-graphic*, counts? )"      >
+
+<!ELEMENT issue-article-meta %issue-article-meta-model;              >
+
+<!ATTLIST issue-article-meta format CDATA #IMPLIED                   >
+
+<!ELEMENT toc-graphic     %graphic-model;                            >
+
+<!ATTLIST toc-graphic     %graphic-atts;                             >
+
+<!ELEMENT issue-subject-group
+            ( issue-subject-title,
+	         ( issue-article-meta | p | issue-subject-group )*)      >
+
+<!ATTLIST issue-subject-group format CDATA #IMPLIED                  >
+
+<!ELEMENT issue-subject-title
+            ( p*, subject, p*, trans-issue-subject* )                >
+
+<!ELEMENT trans-issue-subject ( p*, subject, p* )                    >
+
+<!ATTLIST trans-issue-subject xml:lang           NMTOKEN   #IMPLIED  >

data/lib/dtd/atypon/v1.1.1/dtd/Atypon-archive-custom-elements1.ent

@@ -0,0 +1,247 @@
+<!-- ============================================================= -->
+<!--  MODULE:    Journal Archiving DTD New Custom Elements Module  -->
+<!--  VERSION:   ANSI/NISO JATS Version 1.0                        -->
+<!--             Atypon Customization                              -->
+<!--  DATE:      February 2016                                     -->
+<!--                                                               -->
+<!--    Created from, and fully compatible with, the ANSI/NISO     -->
+<!--    Z39.96 Journal Article Tag Suite (JATS).                   -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//Atypon//DTD Atypon JATS (Z39.96) Journal Archiving DTD - Collection of Custom Atypon Elements v1.1.1 20160223//EN"
+Delivered as file "Atypon-archive-custom-elements1.ent"            -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    DTD VERSION/CHANGE HISTORY                 -->
+<!-- ============================================================= -->
+<!--
+
+Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)
+     =============================================================
+     Atypon JATS Version 1.1.1        (Atypon) v1.1.1 (2016-02-23)
+
+  5. Changed version to 1.1.1 - Based on JATS Version 1.1.1
+
+     =============================================================
+     Atypon JATS Version 1.1.0        (Atypon) v1.1.0 (2014-11-07)
+
+  4. Changed version to 1.1.0 - Based on JATS Version 1.1.0
+
+     =============================================================
+     Atypon JATS Version 1.0.1        (Atypon) v1.0.1 (2013-03-12)
+   
+  3. ACCREDITATION - Enhance <accreditation> model with additional
+     metadata needed by some CME exams: accred-agency, credit-type
+     and description.
+
+     =============================================================
+     Atypon JATS Version 1.0.0        (Atypon) v1.0.0 (2012-08-31)
+   
+  2. ACCREDITATION - Added a new element <accreditation> which
+     collects accreditation metadata for CME articles.
+
+  1. QUESTION/ANSWER - Added a new element <question-wrap> to
+     the sec.class. The element implements a Question/Answer
+     scheme which is particularly useful to Continuing Medical
+     Education articles. The model allows for simple questions
+     followed by their corresponding answers or for a multiple
+     choice setup, where questions are followed by multiple
+     alternative answers, along with the correct answer and an
+     explanation.
+
+                                                                   -->
+
+
+<!-- ============================================================= -->
+<!--                    QUESTION/ANSWER ELEMENTS                   -->
+<!-- ============================================================= -->
+
+<!--                    QUESTION/ANSWER ELEMENTS                   -->
+<!--                    Used to model a Question/Answer scheme which
+                        is particularly useful to Continuing Medical
+	                Education articles. The model allows for
+			simple questions followed by their
+			corresponding answers or for a multiple
+		        choice setup, where questions are followed
+			by multiple alternative answers, along with
+			the correct answer and an explanation.     -->
+
+<!ENTITY % answer-types "essay | fill-in-the-blank | multi-select |
+                         multiple-choice | short-answer |
+                         true-false"                                 >
+
+<!ELEMENT  question-wrap
+            (object-id*, question,
+	       (answer | answer-set)?, explanation*)                 >
+
+<!ENTITY % question-wrap-atts
+           "%jats-common-atts;
+             audience           CDATA                     #IMPLIED
+             content-type       CDATA                     #IMPLIED
+             specific-use       CDATA                     #IMPLIED
+             xml:lang           NMTOKEN                   #IMPLIED"  >
+
+<!ATTLIST  question-wrap
+            %question-wrap-atts;                                     >
+
+<!ELEMENT  question
+                        (object-id*, sec-meta?,
+                         label?, title?, subtitle*, alt-title*,
+                         ( (%sec-level;)+ |
+                           ( (%para-level;)+, (%sec-level;)* ) ),
+                         option*,
+                         (%sec-back-matter-mix;)* )                 >
+
+<!ENTITY % question-atts
+           "%jats-common-atts;
+             question-response-type	(%answer-types;)  #IMPLIED
+             content-type		CDATA             #IMPLIED
+             specific-use		CDATA             #IMPLIED
+             xml:lang                   NMTOKEN           #IMPLIED"  >
+
+<!ATTLIST  question
+            %question-atts;                                          >
+
+<!ELEMENT  question-wrap-group
+                        (object-id*,
+                          label?, title?, subtitle*, alt-title*,
+                          question-preamble?,
+                          question-wrap+ )                          >
+
+<!ENTITY % question-wrap-group-atts
+           "%jats-common-atts;
+             audience           CDATA                     #IMPLIED
+             content-type	CDATA                     #IMPLIED
+             specific-use	CDATA                     #IMPLIED
+             xml:lang           NMTOKEN                   #IMPLIED"  >
+
+<!ATTLIST  question-wrap-group
+            %question-wrap-group-atts;                               >
+
+<!ELEMENT  question-preamble
+                        (object-id*,
+                          label?, title?, subtitle*, alt-title*,
+                          (%para-level;)*, (%sec.class;)*  )        >
+
+<!ENTITY % question-preamble-atts
+           "%jats-common-atts;
+             content-type	CDATA                     #IMPLIED
+             specific-use	CDATA                     #IMPLIED
+             xml:lang           NMTOKEN                   #IMPLIED"  >
+
+<!ATTLIST  question-preamble
+            %question-preamble-atts;                                 >
+
+<!ELEMENT  answer
+                        (object-id*,
+                          label?, title?, subtitle*, alt-title*,
+                          ( (%sec-level;)+ |
+                          ( (%answer-para-level;)+, (%sec-level;)* ) ),
+                          (%sec-back-matter-mix;)*, explanation* )   >
+
+<!ENTITY % answer-atts
+           "%jats-common-atts;
+             pointer-to-question	IDREFS            #REQUIRED
+             content-type		CDATA             #IMPLIED
+             specific-use		CDATA             #IMPLIED
+             xml:lang                   NMTOKEN           #IMPLIED"  >
+
+<!ATTLIST  answer
+            %answer-atts;                                            >
+
+<!ELEMENT  answer-set
+                        (object-id*,
+                          label?, title?, subtitle*, alt-title*,
+                          (answer | %just-para.class; |
+                           explanation)+)                           >
+
+<!ENTITY % answer-set-atts
+           "%jats-common-atts;
+             content-type	CDATA                     #IMPLIED
+             specific-use	CDATA                     #IMPLIED
+             xml:lang           NMTOKEN                   #IMPLIED"  >
+
+<!ATTLIST  answer-set
+            %answer-set-atts;                                        >
+
+<!ELEMENT  option
+                        (object-id*,
+                          label?, title?, subtitle*, alt-title*,
+                          ( (%sec-level;)+ |
+                            ( (%answer-para-level;)+,
+                              (%sec-level;)* ) ),
+                          (%sec-back-matter-mix;)*,
+                           explanation*)                            >
+
+<!ENTITY % option-atts
+           "%jats-common-atts;
+             correct            (yes | no)                #IMPLIED
+             content-type       CDATA                     #IMPLIED
+             specific-use	CDATA                     #IMPLIED
+             xml:lang           NMTOKEN                   #IMPLIED"  >
+
+<!ATTLIST  option
+            %option-atts;                                            >
+
+<!ELEMENT  explanation
+                        (object-id*,
+                          label?, title?, subtitle*, alt-title*,
+                          ( (%sec-level;)+ |
+                            ( (%answer-para-level;)+,
+                              (%sec-level;)* ) ),
+                          (%sec-back-matter-mix;)*)                 >
+
+<!ENTITY % explanation-atts
+           "%jats-common-atts;
+             pointer-to-explained	IDREFS            #REQUIRED
+             content-type		CDATA             #IMPLIED
+             specific-use		CDATA             #IMPLIED
+             xml:lang                   NMTOKEN           #IMPLIED"  >
+
+<!ATTLIST  explanation
+            %explanation-atts;                                       >
+
+
+<!-- ============================================================= -->
+<!--                EXAM ACCREDITATION INFORMATION ELEMENTS        -->
+<!-- ============================================================= -->
+
+<!--                    EXAM ACCREDITATION ELEMENTS                -->
+<!--                    Used to record the accreditation body and
+                        agency, the type of credit and the number
+                        of credit hours earned after taking the
+			exam.                                      -->
+<!ENTITY % accreditation-model
+            "(accred-org-name, accred-agency?, credit-type?,
+	      max-credit-hours, description?)"                       >
+
+<!ELEMENT  accreditation  %accreditation-model;                      >
+
+<!ELEMENT  accred-org-name  (#PCDATA)                                >
+
+<!ELEMENT  accred-agency  (#PCDATA)                                  >
+
+<!ELEMENT  credit-type  (#PCDATA)                                    >
+
+<!ELEMENT  max-credit-hours (#PCDATA)                                >
+
+<!ELEMENT  description (%just-para.class;)+                          >
+
+<!-- correct-answers-percent: Specifies the percentage of correct
+                              answers needed to earn the specified
+                              credit hours                         -->
+<!ENTITY % max-credit-hours-atts
+            "correct-answers-percent    NMTOKEN            #IMPLIED ">
+
+<!ATTLIST  max-credit-hours
+             %max-credit-hours-atts;                                 >
+
+
+<!-- ============== End Archive Atypon Custom Classes ============ -->