xml_jats_resolver 0.2.0 → 0.3.0

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Files changed (80) hide show
  1. checksums.yaml +4 -4
  2. data/.gitignore +1 -0
  3. data/CHANGELOG.md +4 -0
  4. data/lib/dtd/atypon/v1.1.1/dtd/Atypon-Issue-Xml.dtd +233 -0
  5. data/lib/dtd/atypon/v1.1.1/dtd/Atypon-archive-custom-elements1.ent +247 -0
  6. data/lib/dtd/atypon/v1.1.1/dtd/Atypon-archive-oasis-article1-mathml3.dtd +944 -0
  7. data/lib/dtd/atypon/v1.1.1/dtd/Atypon-archive-oasis-article1.dtd +919 -0
  8. data/lib/dtd/atypon/v1.1.1/dtd/Atypon-archive-oasis-custom-classes1.ent +156 -0
  9. data/lib/dtd/atypon/v1.1.1/dtd/Atypon-archive-oasis-custom-modules1.ent +283 -0
  10. data/lib/dtd/atypon/v1.1.1/dtd/Atypon-archivecustom-models1.ent +168 -0
  11. data/lib/dtd/atypon/v1.1.1/dtd/JATS-XHTMLtablesetup1.ent +501 -0
  12. data/lib/dtd/atypon/v1.1.1/dtd/JATS-ali-namespace1.ent +154 -0
  13. data/lib/dtd/atypon/v1.1.1/dtd/JATS-archive-oasis-custom-classes1.ent +326 -0
  14. data/lib/dtd/atypon/v1.1.1/dtd/JATS-archive-oasis-custom-modules1.ent +269 -0
  15. data/lib/dtd/atypon/v1.1.1/dtd/JATS-archivecustom-mixes1.ent +420 -0
  16. data/lib/dtd/atypon/v1.1.1/dtd/JATS-archivecustom-models1.ent +1339 -0
  17. data/lib/dtd/atypon/v1.1.1/dtd/JATS-articlemeta1.ent +1817 -0
  18. data/lib/dtd/atypon/v1.1.1/dtd/JATS-backmatter1.ent +393 -0
  19. data/lib/dtd/atypon/v1.1.1/dtd/JATS-chars1.ent +525 -0
  20. data/lib/dtd/atypon/v1.1.1/dtd/JATS-common-atts1.ent +221 -0
  21. data/lib/dtd/atypon/v1.1.1/dtd/JATS-common1.ent +4273 -0
  22. data/lib/dtd/atypon/v1.1.1/dtd/JATS-default-classes1.ent +1277 -0
  23. data/lib/dtd/atypon/v1.1.1/dtd/JATS-default-mixes1.ent +455 -0
  24. data/lib/dtd/atypon/v1.1.1/dtd/JATS-display1.ent +1000 -0
  25. data/lib/dtd/atypon/v1.1.1/dtd/JATS-format1.ent +858 -0
  26. data/lib/dtd/atypon/v1.1.1/dtd/JATS-funding1.ent +547 -0
  27. data/lib/dtd/atypon/v1.1.1/dtd/JATS-journalmeta1.ent +454 -0
  28. data/lib/dtd/atypon/v1.1.1/dtd/JATS-link1.ent +416 -0
  29. data/lib/dtd/atypon/v1.1.1/dtd/JATS-list1.ent +494 -0
  30. data/lib/dtd/atypon/v1.1.1/dtd/JATS-math1.ent +402 -0
  31. data/lib/dtd/atypon/v1.1.1/dtd/JATS-mathml3-mathmlsetup1.ent +350 -0
  32. data/lib/dtd/atypon/v1.1.1/dtd/JATS-mathml3-modules1.ent +190 -0
  33. data/lib/dtd/atypon/v1.1.1/dtd/JATS-mathmlsetup1.ent +348 -0
  34. data/lib/dtd/atypon/v1.1.1/dtd/JATS-modules1.ent +584 -0
  35. data/lib/dtd/atypon/v1.1.1/dtd/JATS-nlmcitation1.ent +285 -0
  36. data/lib/dtd/atypon/v1.1.1/dtd/JATS-notat1.ent +269 -0
  37. data/lib/dtd/atypon/v1.1.1/dtd/JATS-oasis-namespace1.ent +223 -0
  38. data/lib/dtd/atypon/v1.1.1/dtd/JATS-oasis-tablesetup1.ent +409 -0
  39. data/lib/dtd/atypon/v1.1.1/dtd/JATS-para1.ent +481 -0
  40. data/lib/dtd/atypon/v1.1.1/dtd/JATS-phrase1.ent +502 -0
  41. data/lib/dtd/atypon/v1.1.1/dtd/JATS-references1.ent +1205 -0
  42. data/lib/dtd/atypon/v1.1.1/dtd/JATS-related-object1.ent +283 -0
  43. data/lib/dtd/atypon/v1.1.1/dtd/JATS-section1.ent +324 -0
  44. data/lib/dtd/atypon/v1.1.1/dtd/JATS-xmlspecchars1.ent +389 -0
  45. data/lib/dtd/atypon/v1.1.1/dtd/catalog-jats-v1-1-no-base.xml +946 -0
  46. data/lib/dtd/atypon/v1.1.1/dtd/catalog-jats-v1-1-with-base.xml +951 -0
  47. data/lib/dtd/atypon/v1.1.1/dtd/iso8879/isobox.ent +61 -0
  48. data/lib/dtd/atypon/v1.1.1/dtd/iso8879/isocyr1.ent +88 -0
  49. data/lib/dtd/atypon/v1.1.1/dtd/iso8879/isocyr2.ent +47 -0
  50. data/lib/dtd/atypon/v1.1.1/dtd/iso8879/isodia.ent +35 -0
  51. data/lib/dtd/atypon/v1.1.1/dtd/iso8879/isolat1.ent +83 -0
  52. data/lib/dtd/atypon/v1.1.1/dtd/iso8879/isolat2.ent +142 -0
  53. data/lib/dtd/atypon/v1.1.1/dtd/iso8879/isonum.ent +97 -0
  54. data/lib/dtd/atypon/v1.1.1/dtd/iso8879/isopub.ent +105 -0
  55. data/lib/dtd/atypon/v1.1.1/dtd/iso9573-13/isoamsa.ent +167 -0
  56. data/lib/dtd/atypon/v1.1.1/dtd/iso9573-13/isoamsb.ent +143 -0
  57. data/lib/dtd/atypon/v1.1.1/dtd/iso9573-13/isoamsc.ent +43 -0
  58. data/lib/dtd/atypon/v1.1.1/dtd/iso9573-13/isoamsn.ent +114 -0
  59. data/lib/dtd/atypon/v1.1.1/dtd/iso9573-13/isoamso.ent +73 -0
  60. data/lib/dtd/atypon/v1.1.1/dtd/iso9573-13/isoamsr.ent +204 -0
  61. data/lib/dtd/atypon/v1.1.1/dtd/iso9573-13/isogrk3.ent +64 -0
  62. data/lib/dtd/atypon/v1.1.1/dtd/iso9573-13/isomfrk.ent +75 -0
  63. data/lib/dtd/atypon/v1.1.1/dtd/iso9573-13/isomopf.ent +49 -0
  64. data/lib/dtd/atypon/v1.1.1/dtd/iso9573-13/isomscr.ent +75 -0
  65. data/lib/dtd/atypon/v1.1.1/dtd/iso9573-13/isotech.ent +182 -0
  66. data/lib/dtd/atypon/v1.1.1/dtd/mathml/mmlalias.ent +564 -0
  67. data/lib/dtd/atypon/v1.1.1/dtd/mathml/mmlextra.ent +122 -0
  68. data/lib/dtd/atypon/v1.1.1/dtd/mathml2-qname-1.mod +286 -0
  69. data/lib/dtd/atypon/v1.1.1/dtd/mathml2.dtd +2206 -0
  70. data/lib/dtd/atypon/v1.1.1/dtd/mathml3-qname1.mod +294 -0
  71. data/lib/dtd/atypon/v1.1.1/dtd/mathml3.dtd +1682 -0
  72. data/lib/dtd/atypon/v1.1.1/dtd/oasis-exchange.ent +449 -0
  73. data/lib/dtd/atypon/v1.1.1/dtd/xhtml-inlstyle-1.mod +34 -0
  74. data/lib/dtd/atypon/v1.1.1/dtd/xhtml-table-1.mod +333 -0
  75. data/lib/dtd/atypon/v1.1.1/dtd/xmlchars/isogrk1.ent +70 -0
  76. data/lib/dtd/atypon/v1.1.1/dtd/xmlchars/isogrk2.ent +41 -0
  77. data/lib/dtd/atypon/v1.1.1/dtd/xmlchars/isogrk4.ent +66 -0
  78. data/lib/xml_jats_resolver.rb +2 -1
  79. data/xml_jats_resolver.gemspec +2 -2
  80. metadata +79 -4
@@ -0,0 +1,919 @@
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+ <!-- ============================================================= -->
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+ <!-- MODULE: Journal Archiving and Interchange DTD with OASIS -->
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+ <!-- and XHTML Tables with MATML 2.0 -->
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+ <!-- VERSION: ANSI/NISO JATS Version 1.1 (Z39.96-2015) -->
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+ <!-- DATE: December 2015 -->
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+ <!-- -->
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+ <!-- ============================================================= -->
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+
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+ <!-- ============================================================= -->
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+ <!-- PUBLIC DOCUMENT TYPE DEFINITION -->
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+ <!-- TYPICAL INVOCATION -->
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+ <!--
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+ "-//Atypon//DTD Atypon JATS (Z39.96) Journal Archiving and Interchange DTD with OASIS Tables v1.1.1 20160223//EN"
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+ Delivered as file "Atypon-archive-oasis-article1.dtd"
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+ -->
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+ <!-- ============================================================= -->
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+
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+
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+ <!-- ============================================================= -->
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+ <!-- SYSTEM: Journal Archiving and Interchange DTD with -->
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+ <!-- OASIS Tables of the JATS DTD Suite -->
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+ <!-- -->
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+ <!-- PURPOSE: DTD to describe a full-text journal article. -->
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+ <!-- This model is an extension of the Journal -->
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+ <!-- Archiving and Interchange DTD that contains -->
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+ <!-- both the XHTML table and the CALS OASIS -->
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+ <!-- Exchange Table models. -->
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+ <!-- -->
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+ <!-- The Journal Archiving and Interchange DTD is an -->
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+ <!-- application of the ANSI/NISO Z39.96 JATS Journal -->
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+ <!-- Article Tag Set. It describes journal articles -->
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+ <!-- and some non-article material such as product -->
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+ <!-- and book reviews for repository or interchange -->
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+ <!-- purposes. It describes both the metadata for a -->
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+ <!-- journal article and the full content of -->
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+ <!-- the article. -->
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+ <!-- -->
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+ <!-- This DTD was constructed using the modules in the -->
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+ <!-- JATS DTD Suite, using almost no customization -->
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+ <!-- beyond the addition of the OASIS Table Model. -->
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+ <!-- -->
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+ <!-- TAG SET SPONSOR -->
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+ <!-- National Center for Biotechnology -->
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+ <!-- Information (NCBI) -->
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+ <!-- National Library of Medicine (NLM) -->
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+ <!-- -->
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+ <!-- CREATED FOR: -->
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+ <!-- This DTD was created from the JATS DTD Suite. -->
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+ <!-- Digital archives and publishers may use the -->
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+ <!-- DTD as is for markup of journal literature or -->
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+ <!-- related material for archiving and transferring -->
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+ <!-- such material between archives or create a -->
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+ <!-- custom XML DTD from the Suite for -->
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+ <!-- these purposes. -->
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+ <!-- -->
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+ <!-- This DTD is in the public domain. An organization -->
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+ <!-- that wishes to create its own DTD from the suite -->
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+ <!-- may do so without permission from NLM. -->
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+ <!-- -->
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+ <!-- The suite has been set up to be extended using a -->
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+ <!-- new DTD file and a new DTD-specific customization -->
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+ <!-- module to redefine the many Parameter Entities. -->
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+ <!-- Do not modify the suite directly or redistribute -->
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+ <!-- modified versions of the suite. -->
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+ <!-- -->
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+ <!-- In the interest of maintaining consistency and -->
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+ <!-- clarity for potential users, NLM requests: -->
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+ <!-- -->
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+ <!-- 1. If you create a DTD from the JATS DTD Suite -->
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+ <!-- and intend to stay compatible with the suite, -->
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+ <!-- then please include the following statement -->
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+ <!-- as a comment in all of your DTD modules: -->
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+ <!-- "Created from, and fully compatible with, -->
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+ <!-- the ANSI/NISO Z39.96 Journal Article Tag -->
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+ <!-- Suite (JATS)." -->
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+ <!-- -->
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+ <!-- 2. If you alter one or more modules of the suite, -->
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+ <!-- then please rename your version and all its -->
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+ <!-- modules to avoid any confusion with the -->
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+ <!-- original suite. Also, please include the -->
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+ <!-- following statement as a comment in all your -->
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+ <!-- DTD modules: -->
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+ <!-- "Based in part on, but not fully compatible -->
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+ <!-- with, the ANSI/NISO Z39.96 Journal Article -->
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+ <!-- Tag Suite (JATS)." -->
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+ <!-- -->
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+ <!-- ORIGINAL CREATION DATE: -->
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+ <!-- December 2002 -->
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+ <!-- -->
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+ <!-- CREATED BY: Mulberry Technologies, Inc. for the NISO Z39.96 -->
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+ <!-- Working Group. Mulberry Technologies was -->
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+ <!-- supported by National Center for Biotechnology -->
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+ <!-- Information (NCBI), a center of the US National -->
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+ <!-- Library of Medicine (NLM). -->
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+ <!-- -->
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+ <!-- The Journal Archiving and Interchange DTD is -->
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+ <!-- built from the JATS DTD Suite. -->
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+ <!-- -->
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+ <!-- Suggestions for refinements and enhancements to -->
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+ <!-- this DTD should be sent in email to: -->
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+ <!-- jats@ncbi.nlm.nih.gov -->
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+ <!-- ============================================================= -->
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+
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+
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+ <!-- ============================================================= -->
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+ <!-- DTD VERSION/CHANGE HISTORY -->
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+ <!-- ============================================================= -->
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+ <!--
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+
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+ Version Reason/Occasion (who) vx.x (yyyy-mm-dd)
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+ =============================================================
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+ JATS Version 1.1 (DAL/BTU) v1.1 (2015-12-15)
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+
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+ JATS is a continuing maintenance NISO Standard, which
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+ requires voting by the ANSI and NISO memberships to be changed.
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+ JATS 1.1 was approved in late 2015, so the formal public
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+ identifiers were changed in the modules and the catalogs.
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+ No model or attribute changes were made at this time.
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+
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+ 23. JATS became version "1.1" and "v1.1 20151215"
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+
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+ =============================================================
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+ JATS Version 1.1d3 (DAL/BTU) v1.1d3 (2015-03-01)
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+
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+ The changes in this release are in response to NISO
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+ License and Indicators Recommended Practice.
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+
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+ NISO JATS is a continuing maintenance NISO Standard, which
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+ requires voting by the NISO membership to be changed. This
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+ Committee Draft 1.1d3 will be sent to the NISO voting
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+ membership, to become (if approved) NISO JATS 1.1.
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+
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+ This draft DTD represents an interim version of the
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+ non-normative JATS DTD Suite, as an indication to JATS users
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+ the decisions that have been made by the JATS Standing
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+ Committee.
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+
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+ 22. ALI - Added ALI namespace for NISO Access and Indicator
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+ license reference and free to read elements.
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+
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+ 21. JATS became version "1.1d3" and "v1.1d3 20150301"
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+
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+ =============================================================
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+ JATS Version 1.1d2 (DAL/BTU) v1.1d2 (2014-09-30)
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+
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+ NISO JATS is a continuing maintenance NISO Standard, which
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+ requires voting by the NISO membership to be changed. This
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+ Committee Draft 1.1d2 will be sent to the NISO voting
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+ membership, to become (if approved) NISO JATS 1.1.
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+
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+ This catalog represents an interim version of the
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+ non-normative JATS DTD Suite, as an indication to JATS users
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+ the decisions that have been made by the JATS Standing
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+ Committee.
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+
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+ 20. <VOLUME> INSIDE <ARTICLE-META> and <FRONT-STUB>
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+ - Allowed <volume> to repeat inside <article-meta>, the types to
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+ be distinguished using @content-type
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+ - Added new optional element <volume-issue-group> inside
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+ <article-meta) following all volume and issue elements
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+ to hold volume-issue pairs (or n-tuples) when a second
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+ and subsequent <volume> has its own related issue
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+ information.
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+ - Made <issue> repeatable, for those who choose not to use
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+ the new wrapper element.
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+
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+ 19. JATS became version "1.1d2" and "v1.1d2 20140930//EN"
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+
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+ =============================================================
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+ NISO JATS Version 1.1d1 (DAL/BTU) v1.1 (2013-11-15)
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+
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+ ANSI/NISO Z39.96-2012 (pre-release for V1.0 BITS; Version 1.1d1)
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+
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+ NISO JATS Standing Committee met and answered the requests and
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+ suggestions from the NISO request forms.
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+
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+ Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs,
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+ XSDs, RNGs and supporting documentation are available at
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+ http://jats.nlm.nih.gov/1.0/
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+
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+ 18. DTD Version - Updated the DTD-version attribute to "1.1d1" and
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+ the formal public identifier to the date: "v1.1d1 20130915//EN".
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+
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+ 17. GLOBAL ATTRIBUTES - Added the new module for Common (global)
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+ attributes: %JATS-common-atts.ent;, called in before the
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+ customizations models module.
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+
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+ 16. GLOBAL ATTRIBUTES - Added the new parameter entity
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+ %jats-common-atts;
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+ to every element in this module. This PE adds (for now) the
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+ @id attribute and the @xml:base attribute to every element,
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+ whether metadata or narrative.
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+ Since the @id in this parameter entity is optional, a second
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+ parameter entity jats-common-atts-id-required was also added.
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+ The two are kept in sync with the jats-base-atts parameter
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+ entity.
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+ This added a new attribute list to:
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+ - back
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+ - front
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+ - front-stub
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+
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+ 15. ABSTRACTS AND KEYWORDS
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+ Changed "abstract*" to "(%abstract.class;)*"
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+ and "kwd-group*" to "(%kwd-group.class;)*" since those
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+ classes now exist. Elements should have a limited number of
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+ ways to be invoked.
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+ - front-stub (through %front-stub-model;)
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+
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+ =============================================================
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+ NISO JATS Version 1.0 (DAL/BTU) v1.0 (2012-xx-xx)
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+
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+ ANSI/NISO Z39.96-2012 (Version 1.0)
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+
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+ Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs,
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+ XSDs, RNGs and supporting documentation are available at
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+ http://jats.nlm.nih.gov/1.0/
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+
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+ 14. FRONT MODEL - The model for front (%front-model;) in this
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+ modules did not agree with the front model in the regular
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+ archiving module. Replaced this model with the one from the
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+ archiving module.
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+
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+ 13. RELATED OBJECT - Added <related-object> everywhere
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+ <related-article> was used, including inside
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+ <front-stub> using front-stub-model.
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+
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+ 12. OASIS NAMESPACE - Added the OASIS table namespace handling,
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+ which, by default, places a namespace prefix of "oasis" on
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+ the OASIS CALS Exchange Table Model.
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+ - Added call to JATS-oasis-namespace.ent (which sets up
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+ the OASIS namespace URI and the prefix "oasis")
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+ - Added %oasis.xmlns.attrib; attribute to <article>
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+ - Altered the custom classes module to use the new
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+ namespaced OASIS element names for <table> and <tbody>
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+ (%otable.qname; and %otbody.qname;)
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+
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+ NOTE: The XHTML table material was not removed, so both table
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+ models still work (using <table> and <oasis:table> respectively.
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+
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+ 11. Updated the DTD-version attribute to "1.0" and the formal
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+ public identifier to the date: "v1.0 20120330//EN".
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+
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+ =============================================================
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+ Version 0.4 (DAL/BTU) v0.4 (2011-01-31)
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+
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+ This Tag Set is in the process of becoming a NISO standard.
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+ The version numbers are starting over from 0.4", as a Trial
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+ Use Draft, to be made into "Version 1.0" when the Tag Suite
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+ becomes a NISO standard. Thus, the version number that would
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+ have been "NLM Version 3.1 Draft" has become NISO JATS
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+ "Version 0.4".
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+
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+ Details on NISO Trial Use Draft Version 0.4 are available at
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+ http://jats.nlm.nih.gov/JATS-0.4.
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+
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+ 10. Updated the DTD-version attribute to "0.4"
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+
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+ 9. Updated the public identifier to "v0.4 20110131",
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+ modified the formal public identifier to include "JATS (Z39.96)",
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+ and the filename as delivered to include "JATS" and the
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+ new version number "0". Also included the phrase
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+ "(OASIS Tables)" in the formal name.
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+
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+ Caution: Version 0.4 is fully compatible with Version 3.0, but
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+ the following change could break some customizations.
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+
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+ 8. BODY ATTRIBUTES - Added attribute list and new PE %body-atts;
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+ to the model of <body>. The only current attribute is
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+ @specific-use, which indicates, for example, not a real
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+ tagged XML body, but a 'bag of words" for indexing purposes.
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+
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+ 7. I18N - Changed the default for @xml:lang from "en" to
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+ #IMPLIED, so that the @xml:lang would inherit properly and
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+ not need to be over-ridden in
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+ - <sub-article> through %sub-article-atts;
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+ - <response> through %response-atts;
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+
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+ 6. XML:LANG - Added @xml:lang to the following elements:
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+ Added to facilitate multiple languages.
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+ - article
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+
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+ 5. AFFILIATION ALTERNATIVES - Added the element <aff-alternatives>
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+ to <front-stub> through %front-stub-model;. This element
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+ will hold multiple <aff>s that are a representation of a
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+ single affiliation, for example, the name of an institution
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+ in two languages or two scripts.
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+
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+ =============================================================
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+ Version 3.0 (DAL/BTU) v3.0 (2007-10-31)
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+
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+ Version 3.0 is the first non-backward-compatible release.
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+ In addition to the usual incremental changes, some
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+ elements and attributes have been renamed and/or remodeled
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+ to better meet user needs and to increase tag set consistency.
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+ All module change histories are available through the Tag Suite
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+ web site at http://dtd.nlm.nih.gov.
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+
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+ Details on version 3.0 are available at
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+ http://dtd.nlm.nih.gov/3.0.
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+
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+ 4. AFFILIATION ALTERNATIVES - Added the element <aff-alternatives>
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+ to <front-stub> through %front-stub-model;. This element
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+ will hold multiple <aff>s that are a representation of a
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+ single affiliation, for example, the name of an institution
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+ in two languages or two scripts.
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+
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+ 3. LANGUAGE CODES - Codes for languages as well as variants,
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+ transliterations, regions, scripts, and combinations
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+ such as "Jpan"(Han + Hiragana + Katakana). These values should be
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+ taken from RFC 5646/W3C/IANA Subtag Registry recommendations
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+ and can be found online at:
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+ http://www.iana.org/assignments/language-subtag-registry
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+
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+ 2. Changed default @xml:lang from "EN" from "en" to match latest
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+ RFC 4646/W3C/IANA Subtag Registry recommendations
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+
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+ 1. Updated public identifier to "v3.0 20080202//EN" -->
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+
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+ <!-- ============================================================= -->
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+ <!-- Details concerning
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+ ANSI/NISO Z39.96-2015 JATS-based DTDs, XSDs,
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+ RNGs and supporting documentation are available at
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+ http://jats.nlm.nih.gov/1.1/ -->
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+
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+ <!-- ============================================================= -->
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+ <!-- DESIGN CONSIDERATIONS -->
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+ <!-- ============================================================= -->
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+
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+
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+ <!-- MODULAR DTD LIBRARY
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+ A set of journal archiving and interchange
332
+ DTD modules was written as the basis for
333
+ publishing, interchange, and repository
334
+ DTDs, with the intention that DTDs for
335
+ specific purposes, such as this Journal
336
+ Archiving and Interchange DTD, would be
337
+ developed based on them.
338
+
339
+ This archiving DTD has been designed to
340
+ be descriptive, open, and inclusive to
341
+ allow journal articles to be translated into
342
+ this format as conveniently as possible
343
+ from a wide variety of proprietary journal
344
+ article DTDs (such as Blackwell, Keton, and
345
+ Ovid).
346
+
347
+ This Archiving DTD has been developed from
348
+ the JATS DTD Suite modules, in the approved
349
+ manner, making changes to the declarations
350
+ in those modules by over-riding Parameter
351
+ Entity contents by redefining the entities
352
+ in the:
353
+ %archive-oasis-custom-classes.ent;
354
+ %archivecustom-mixes.ent;
355
+ %archivecustom-models.ent;
356
+ modules, which are called from this DTD file.
357
+ No changes to any of the original JATS DTD
358
+ Suite modules are required in order to
359
+ use this DTD. -->
360
+
361
+
362
+ <!-- ============================================================= -->
363
+ <!-- MODULES OF MODULES INVOKED -->
364
+ <!-- ============================================================= -->
365
+
366
+ <!-- MODULE TO NAME ATYPON-DTD-SPECIFIC MODULES -->
367
+ <!-- Names all ATYPON-specific external modules -->
368
+ <!ENTITY % atypon-archive-oasis-custom-modules.ent PUBLIC
369
+ "-//Atypon//DTD Atypon (Z39.96) Journal Archiving and Interchange DTD with OASIS Tables DTD-Specific Modules v1.1.1 20160223//EN"
370
+ "Atypon-archive-oasis-custom-modules1.ent" >
371
+ %atypon-archive-oasis-custom-modules.ent;
372
+
373
+ <!-- MODULE TO NAME DTD-SPECIFIC MODULES -->
374
+ <!-- Names all DTD-specific external modules -->
375
+ <!ENTITY % archive-oasis-custom-modules.ent PUBLIC
376
+ "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD with OASIS Tables DTD-Specific Modules v1.1 20151215//EN"
377
+ "JATS-archive-oasis-custom-modules1.ent" >
378
+ %archive-oasis-custom-modules.ent;
379
+
380
+
381
+ <!-- MODULE TO NAME THE MODULES -->
382
+ <!-- Declares all the external modules that are
383
+ part of the modular JATS DTD Suite library.
384
+ Thus it does NOT declare itself; the
385
+ DTD-specific module-of-modules; any
386
+ DTD-specific class, mix, or model over-ride
387
+ modules; or any content modules specific to
388
+ this DTD. These modules are declared in the
389
+ DTD-specific module of modules.
390
+ Since this module declares but does not
391
+ invoke modules, this DTD then invokes any
392
+ modules it uses by referencing the external
393
+ Parameter Entities defined in the Module of
394
+ Modules. To include a set of elements (such
395
+ as all the lists or the table elements) this
396
+ module defines the external Parameter Entity
397
+ for the module(s) that contains the MathML
398
+ declarations and the DTD references that
399
+ entity. -->
400
+ <!ENTITY % modules.ent PUBLIC
401
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Module of Modules v1.1 20151215//EN"
402
+ "JATS-modules1.ent" >
403
+ %modules.ent;
404
+
405
+ <!-- ============================================================= -->
406
+ <!-- OASIS NAMESPACE SETUP -->
407
+ <!-- ============================================================= -->
408
+
409
+
410
+ <!-- DEFINE OASIS NAMESPACE ATTRIBUTE AND PREFIX-->
411
+ <!-- Names the module defines the OASIS CALS
412
+ Exchange Model namespace, prefix, and
413
+ pseudo-attribute @xmlns and all the
414
+ element qnames for CALS Tables. -->
415
+ %JATS-oasis-namespace.ent;
416
+
417
+ <!-- ============================================================= -->
418
+ <!-- NISO ALI NAMESPACE SETUP -->
419
+ <!-- ============================================================= -->
420
+
421
+
422
+ <!-- DEFINE ALI NAMESPACE ATTRIBUTE AND PREFIX -->
423
+ <!-- Names the module defines the NISO Access and
424
+ Indicators Exchange Model namespace, prefix,
425
+ and pseudo-attribute @xmlns. -->
426
+ %JATS-ali-namespace.ent;
427
+
428
+
429
+ <!-- ============================================================= -->
430
+ <!-- SET UP COMMON (ALL ELEMENT) ATTRIBUTES -->
431
+ <!-- ============================================================= -->
432
+
433
+
434
+ <!-- COMMON ATTRIBUTES MODULE -->
435
+ <!-- Set up the common attributes, those used on
436
+ nearly all elements.
437
+ Must be called before the custom models
438
+ module. -->
439
+ %JATS-common-atts.ent;
440
+
441
+
442
+ <!-- ============================================================= -->
443
+ <!-- CUSTOMIZATION MODULES INVOKED -->
444
+ <!-- Note: These modules must be called after -->
445
+ <!-- all Module of Modules but before any other -->
446
+ <!-- modules. Unlike any other grouping, order -->
447
+ <!-- of these modules matters. -->
448
+ <!-- ============================================================= -->
449
+
450
+ <!-- ATYPON-DTD-SPECIFIC CLASS CUSTOMIZATIONS
451
+ MODULE -->
452
+ <!-- Names the module that holds the DTD-specific
453
+ class definitions for the Journal Archiving
454
+ and Interchange DTD that over-rides the Suite
455
+ defaults.
456
+ (Defined
457
+ in %atypon-archive-oasis-custom-classes.ent;)
458
+ -->
459
+ %atypon-archive-oasis-custom-classes.ent;
460
+
461
+ <!-- DTD-SPECIFIC CLASS CUSTOMIZATIONS MODULE -->
462
+ <!-- Names the module that holds the DTD-specific
463
+ class definitions for the Journal Archiving
464
+ and Interchange DTD that over-rides the Suite
465
+ defaults.
466
+ (Defined in
467
+ %archive-oasis-custom-modules.ent; ) -->
468
+ %archive-oasis-custom-classes.ent;
469
+
470
+
471
+ <!-- DEFAULT ELEMENT CLASSES MODULE -->
472
+ <!-- Names the module that holds the standard
473
+ class definitions for the JATS DTD Suite. -->
474
+ %default-classes.ent;
475
+
476
+ <!-- DTD-SPECIFIC MIX CUSTOMIZATIONS MODULE -->
477
+ <!-- Set up the Parameter Entities and element
478
+ class definitions that will be used to
479
+ over-ride some element mixes in this DTD.
480
+ (Defined in
481
+ %archive-oasis-custom-modules.ent; ) -->
482
+ %archivecustom-mixes.ent;
483
+
484
+
485
+ <!-- DEFAULT MIX CUSTOMIZATIONS MODULE -->
486
+ <!-- Names the module that holds the standard
487
+ mix definitions for the JATS DTD Suite. -->
488
+ %default-mixes.ent;
489
+
490
+ <!-- Atypon DTD-SPECIFIC MODELS/ATTRIBUTES
491
+ CUSTOMIZATIONS MODULE -->
492
+ <!-- Names the module that holds the over-rides
493
+ of content models, attribute lists, elements
494
+ lists to be used in content models, and
495
+ attribute values. These are DTD-specific.
496
+ (Defined
497
+ in %atypon-archivecustom-modules.ent; ) -->
498
+ %atypon-archivecustom-models.ent;
499
+
500
+ <!-- DTD-SPECIFIC MODELS/ATTRIBUTES CUSTOMIZATIONS
501
+ MODULE -->
502
+ <!-- Names the module that holds the over-rides
503
+ of content models, attribute lists, elements
504
+ lists to be used in content models, and
505
+ attribute values. These are DTD-specific.
506
+ (Defined in
507
+ %archive-oasis-custom-modules.ent; ) -->
508
+ %archivecustom-models.ent;
509
+
510
+ <!-- ============================================================= -->
511
+ <!-- COMMON (SHARED) ELEMENTS MODULE INVOKED -->
512
+ <!-- ============================================================= -->
513
+
514
+
515
+ <!-- COMMON (SHARED) DECLARATIONS -->
516
+ <!-- Declarations for elements, attributes,
517
+ entities, and Notations that are shared by
518
+ more than one class module. Note: Must be
519
+ called before any of the class modules. -->
520
+
521
+ %common.ent;
522
+
523
+
524
+ <!-- ============================================================= -->
525
+ <!-- JOURNAL ARTICLE CLASS ELEMENTS (alpha) -->
526
+ <!-- ============================================================= -->
527
+
528
+ <!-- ARTICLE METADATA ELEMENTS -->
529
+ %articlemeta.ent;
530
+
531
+
532
+ <!-- BACK MATTER ELEMENTS -->
533
+ %backmatter.ent;
534
+
535
+
536
+ <!-- DISPLAY (GRAPHICAL) ELEMENTS -->
537
+ %display.ent;
538
+
539
+
540
+ <!-- FORMATTING ELEMENT CLASSES -->
541
+ <!-- Elements that change rendition/display. -->
542
+ %format.ent;
543
+
544
+
545
+ <!-- FUNDING ELEMENTS -->
546
+ <!-- Elements that describe the sponsorship or
547
+ open access -->
548
+ %funding.ent;
549
+
550
+
551
+ <!-- JOURNAL METADATA ELEMENTS -->
552
+ %journalmeta.ent;
553
+
554
+
555
+ <!-- LINK CLASS ELEMENTS -->
556
+ %link.ent;
557
+
558
+
559
+ <!-- LIST CLASS ELEMENTS -->
560
+ %list.ent;
561
+
562
+
563
+ <!-- MATH ELEMENTS -->
564
+ %math.ent;
565
+
566
+
567
+ <!-- NLM CITATION ELEMENT -->
568
+ %nlmcitation.ent;
569
+
570
+
571
+ <!-- PARAGRAPH-LEVEL ELEMENTS -->
572
+ %para.ent;
573
+
574
+
575
+ <!-- PHRASE-LEVEL ELEMENTS -->
576
+ %phrase.ent;
577
+
578
+
579
+ <!-- BIBLIOGRAPHIC REFERENCE (CITATION)
580
+ CLASS ELEMENTS -->
581
+ %references.ent;
582
+
583
+
584
+ <!-- RELATED OBJECT ELEMENT -->
585
+ <!-- Defines the <related-object> element to
586
+ describe a related object such as a
587
+ related book or a dataset. -->
588
+ %related-object.ent;
589
+
590
+
591
+ <!-- SECTION ELEMENTS -->
592
+ %section.ent;
593
+
594
+ <!-- ATYPON-SPECIFIC ELEMENTS -->
595
+ <!-- Includes a collection of elements such as
596
+ CME, added by Atypon to support features
597
+ not directly provided by the JATS Suite. -->
598
+ %atypon-elements.ent;
599
+
600
+ <!-- ============================================================= -->
601
+ <!-- THE REST OF THE EXTERNAL MODULES INVOKED -->
602
+ <!-- ============================================================= -->
603
+
604
+
605
+ <!-- MATHML SETUP MODULE -->
606
+ <!-- Invoke the MathML modules -->
607
+ %mathmlsetup.ent;
608
+
609
+
610
+ <!-- XHTML TABLE SETUP MODULE -->
611
+ <!-- Set up the necessary Parameter Entity values
612
+ and then invoke XHTML (HTML 4.0) table
613
+ module -->
614
+ %XHTMLtablesetup.ent;
615
+
616
+
617
+ <!-- OASIS EXCHANGE (CALS) TABLE SETUP MODULE -->
618
+ <!-- Set up the necessary Parameter Entity values
619
+ and then invokes OASIS Exchange table
620
+ module -->
621
+ %oasis-tablesetup.ent;
622
+
623
+
624
+ <!-- SPECIAL CHARACTERS DECLARATIONS -->
625
+ <!-- Standard XML special character entities
626
+ used in this DTD -->
627
+ %xmlspecchars.ent;
628
+
629
+
630
+ <!-- CUSTOM SPECIAL CHARACTERS DECLARATIONS -->
631
+ <!-- Custom special character entities created
632
+ specifically for use in this DTD Suite -->
633
+ %chars.ent;
634
+
635
+
636
+ <!-- NOTATION DECLARATIONS MODULE -->
637
+ %notat.ent;
638
+
639
+
640
+ <!-- ============================================================= -->
641
+ <!-- PARAMETER ENTITIES FOR ATTRIBUTE LISTS -->
642
+ <!-- ============================================================= -->
643
+
644
+
645
+ <!-- DTD VERSION -->
646
+ <!-- What version of this DTD was used to make
647
+ the document instance under consideration.
648
+ Note that this is a fixed value that should
649
+ change every time the DTD changes versions or
650
+ revisions. -->
651
+ <!ENTITY % dtd-version
652
+ "dtd-version
653
+ CDATA #FIXED '1.1'" >
654
+
655
+
656
+ <!-- ARTICLE ATTRIBUTES -->
657
+ <!-- Attributes for the top-level element
658
+ <article> -->
659
+ <!ENTITY % article-atts
660
+ "%jats-common-atts;
661
+ article-type
662
+ CDATA #IMPLIED
663
+ specific-use
664
+ CDATA #IMPLIED
665
+ xml:lang NMTOKEN 'en'
666
+ %dtd-version;
667
+ %XLINK.xmlns.attrib;
668
+ %MATHML.xmlns.attrib;
669
+ %Schema.xmlns.attrib;
670
+ %ali.xmlns.attrib;
671
+ %oasis.xmlns.attrib;" >
672
+
673
+
674
+ <!-- BACK ATTRIBUTES -->
675
+ <!-- Attributes for the <back> element -->
676
+ <!ENTITY % back-atts
677
+ "%jats-common-atts;" >
678
+
679
+
680
+ <!-- BODY ATTRIBUTES -->
681
+ <!-- Attributes for the <body> element -->
682
+ <!ENTITY % body-atts
683
+ "%jats-common-atts;
684
+ specific-use
685
+ CDATA #IMPLIED" >
686
+
687
+
688
+ <!-- FRONT ATTRIBUTES -->
689
+ <!-- Attributes for the <front> element -->
690
+ <!ENTITY % front-atts
691
+ "%jats-common-atts;" >
692
+
693
+
694
+ <!-- FRONT STUB ATTRIBUTES -->
695
+ <!-- Attributes for the <front-stub> element -->
696
+ <!ENTITY % front-stub-atts
697
+ "%jats-common-atts;" >
698
+
699
+
700
+ <!-- SUB-ARTICLE ATTRIBUTES -->
701
+ <!-- Attributes for the <sub-article> element -->
702
+ <!ENTITY % sub-article-atts
703
+ "%jats-common-atts;
704
+ article-type
705
+ CDATA #IMPLIED
706
+ specific-use
707
+ CDATA #IMPLIED
708
+ xml:lang NMTOKEN #IMPLIED" >
709
+
710
+
711
+ <!-- RESPONSE ATTRIBUTES -->
712
+ <!-- Attributes for the <response> element -->
713
+ <!ENTITY % response-atts
714
+ "%jats-common-atts;
715
+ response-type
716
+ CDATA #IMPLIED
717
+ specific-use
718
+ CDATA #IMPLIED
719
+ xml:lang NMTOKEN #IMPLIED" >
720
+
721
+
722
+ <!-- ============================================================= -->
723
+ <!-- JOURNAL ARTICLE ELEMENTS -->
724
+ <!-- ============================================================= -->
725
+
726
+
727
+ <!-- ARTICLE MODEL (LIMITED) -->
728
+ <!-- Article-like model used for, for example,
729
+ a short sub-article such as a news brief that
730
+ is contained in side a journal article.
731
+ -->
732
+ <!ENTITY % article-short-model
733
+ "((front | front-stub), body?, back?,
734
+ floats-group?)" >
735
+
736
+
737
+ <!-- ARTICLE MODEL WITH SUB-ARTICLE OR RESPONSE -->
738
+ <!-- Typical journal article model, which may
739
+ contain extended components, such as
740
+ sub-articles or responses, but which usually
741
+ contains neither. -->
742
+ <!ENTITY % article-full-model
743
+ "(front, body?, back?, floats-group?,
744
+ (sub-article* | response*) )" >
745
+
746
+
747
+ <!-- ARTICLE -->
748
+ <!-- The complete content of a journal article.
749
+ Details at:
750
+ http://jats.nlm.nih.gov/archiving/tag-library/1.1/index.html?elem=article
751
+ -->
752
+ <!ELEMENT article %article-full-model; >
753
+ <!ATTLIST article
754
+ %article-atts; >
755
+
756
+
757
+ <!-- ============================================================= -->
758
+ <!-- FRONT MATTER ELEMENTS -->
759
+ <!-- ============================================================= -->
760
+
761
+
762
+ <!-- FRONT MATTER MODEL -->
763
+ <!-- Model for the <front> matter (the header
764
+ metadata) of a journal article) -->
765
+ <!ENTITY % front-model "(journal-meta?, article-meta,
766
+ (%list.class; | %front.class; |
767
+ %front-back.class;)* )" >
768
+
769
+
770
+ <!-- FRONT MATTER -->
771
+ <!-- The metadata concerning an article, such as
772
+ the name and issue of the journal in which it
773
+ appears and the name and author(s) of the
774
+ article.
775
+ Details at:
776
+ http://jats.nlm.nih.gov/archiving/tag-library/1.1/index.html?elem=front
777
+ -->
778
+ <!ELEMENT front %front-model; >
779
+ <!ATTLIST front
780
+ %front-atts; >
781
+
782
+
783
+ <!-- ============================================================= -->
784
+ <!-- BODY ELEMENTS -->
785
+ <!-- ============================================================= -->
786
+
787
+
788
+ <!-- BODY MODEL -->
789
+ <!-- Content model for the Body (main textual
790
+ content) of a journal article. -->
791
+ <!ENTITY % body-model "((%para-level;)*, (%sec-level;)*,
792
+ sig-block?)" >
793
+
794
+
795
+ <!-- BODY OF THE ARTICLE -->
796
+ <!-- The main textual portion of the article that
797
+ conveys the content.
798
+ Details at:
799
+ http://jats.nlm.nih.gov/archiving/tag-library/1.1/index.html?elem=body
800
+ -->
801
+ <!ELEMENT body %body-model; >
802
+ <!ATTLIST body
803
+ %body-atts; >
804
+
805
+
806
+ <!-- ============================================================= -->
807
+ <!-- BACK MATTER ELEMENTS -->
808
+ <!-- ============================================================= -->
809
+
810
+
811
+ <!-- BACK MATTER MODEL -->
812
+ <!-- Content model for the Back Matter (ancillary
813
+ material such as appendices) of a journal
814
+ article. -->
815
+ <!ENTITY % back-model "(label?, title*,
816
+ (%doc-back-matter-mix;)* )" >
817
+
818
+
819
+ <!-- BACK MATTER -->
820
+ <!-- Ancillary or supporting material not included
821
+ as part of the main textual content of a
822
+ journal article, for example appendices and
823
+ acknowledgments.
824
+ Details at:
825
+ http://jats.nlm.nih.gov/archiving/tag-library/1.1/index.html?elem=back
826
+ -->
827
+ <!ELEMENT back %back-model; >
828
+ <!ATTLIST back
829
+ %back-atts; >
830
+
831
+
832
+ <!-- ============================================================= -->
833
+ <!-- SUB-ARTICLE -->
834
+ <!-- ============================================================= -->
835
+
836
+
837
+ <!-- SUB-ARTICLE MODEL -->
838
+ <!-- Content model for the <sub-article> element
839
+ -->
840
+ <!ENTITY % sub-article-model
841
+ "( (front | front-stub), body?, back?,
842
+ floats-group?,
843
+ (sub-article* | response*) )" >
844
+
845
+
846
+ <!-- SUB-ARTICLE -->
847
+ <!-- An article that is completely contained
848
+ inside another article. Both the article and
849
+ the sub-article have their own metadata. The
850
+ article has at very least journal and issue
851
+ information and start and end pages; it may
852
+ have a title, author, or other metadata.
853
+ Details at:
854
+ http://jats.nlm.nih.gov/archiving/tag-library/1.1/index.html?elem=sub-article
855
+ -->
856
+ <!ELEMENT sub-article %sub-article-model; >
857
+ <!ATTLIST sub-article
858
+ %sub-article-atts; >
859
+
860
+
861
+ <!-- FRONT MODEL STUB -->
862
+ <!-- Content model for the <front-stub> element
863
+ -->
864
+ <!ENTITY % front-stub-model
865
+ "(article-id*, article-categories?,
866
+ title-group?,
867
+ (%contrib-group.class; |
868
+ %aff-alternatives.class; | %x.class;)*,
869
+ author-notes?, pub-date*,
870
+ volume*, volume-id*, volume-series?,
871
+ issue*, issue-id*, issue-title*,
872
+ issue-sponsor*, issue-part?,
873
+ volume-issue-group*, isbn*,
874
+ supplement?,
875
+ ( ( (fpage, lpage?)?, page-range?) |
876
+ elocation-id )?,
877
+ (%address-link.class; | product |
878
+ supplementary-material)*,
879
+ history?, permissions?, self-uri*,
880
+ (%related-article.class;)*,
881
+ (%abstract.class;)*,
882
+ trans-abstract*, (%kwd-group.class;)*, accreditation*,
883
+ funding-group*, conference*, counts?,
884
+ custom-meta-group?)" >
885
+
886
+
887
+ <!-- STUB FRONT METADATA -->
888
+ <!-- A reduced metadata set for use in
889
+ sub-articles and responses, which will
890
+ inherit metadata not defined in the stub
891
+ from the enclosing article
892
+ Details at:
893
+ http://jats.nlm.nih.gov/archiving/tag-library/1.1/index.html?elem=front-stub
894
+ -->
895
+ <!ELEMENT front-stub %front-stub-model; >
896
+ <!ATTLIST front-stub
897
+ %front-stub-atts; >
898
+
899
+
900
+ <!-- ============================================================= -->
901
+ <!-- RESPONSE ELEMENTS -->
902
+ <!-- ============================================================= -->
903
+
904
+
905
+ <!-- RESPONSE -->
906
+ <!-- Reply, response, or commentary concerning the
907
+ journal article. In the typical case, the
908
+ response is included in the same XML package
909
+ as the original article, and thus attached
910
+ at the end of the article proper.
911
+ Details at:
912
+ http://jats.nlm.nih.gov/archiving/tag-library/1.1/index.html?elem=response
913
+ -->
914
+ <!ELEMENT response %article-short-model; >
915
+ <!ATTLIST response
916
+ %response-atts; >
917
+
918
+
919
+ <!-- ================== End Journal Archiving and Interchange DTD -->