wukong 0.1.1

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Files changed (143) hide show
  1. data/LICENSE.textile +107 -0
  2. data/README.textile +166 -0
  3. data/bin/cutc +30 -0
  4. data/bin/cuttab +5 -0
  5. data/bin/greptrue +8 -0
  6. data/bin/hdp-cat +3 -0
  7. data/bin/hdp-catd +3 -0
  8. data/bin/hdp-du +81 -0
  9. data/bin/hdp-get +3 -0
  10. data/bin/hdp-kill +3 -0
  11. data/bin/hdp-ls +10 -0
  12. data/bin/hdp-mkdir +3 -0
  13. data/bin/hdp-mv +3 -0
  14. data/bin/hdp-parts_to_keys.rb +77 -0
  15. data/bin/hdp-ps +3 -0
  16. data/bin/hdp-put +3 -0
  17. data/bin/hdp-rm +11 -0
  18. data/bin/hdp-sort +29 -0
  19. data/bin/hdp-stream +29 -0
  20. data/bin/hdp-stream-flat +18 -0
  21. data/bin/hdp-sync +17 -0
  22. data/bin/hdp-wc +67 -0
  23. data/bin/md5sort +20 -0
  24. data/bin/tabchar +5 -0
  25. data/bin/uniqc +3 -0
  26. data/bin/wu-hist +3 -0
  27. data/bin/wu-lign +177 -0
  28. data/bin/wu-sum +30 -0
  29. data/doc/INSTALL.textile +41 -0
  30. data/doc/LICENSE.textile +107 -0
  31. data/doc/README-tutorial.textile +163 -0
  32. data/doc/README-wulign.textile +59 -0
  33. data/doc/README-wutils.textile +128 -0
  34. data/doc/TODO.textile +61 -0
  35. data/doc/UsingWukong-part1-setup.textile +2 -0
  36. data/doc/UsingWukong-part2-scraping.textile +2 -0
  37. data/doc/UsingWukong-part3-parsing.textile +132 -0
  38. data/doc/code/api_response_example.txt +20 -0
  39. data/doc/code/parser_skeleton.rb +38 -0
  40. data/doc/hadoop-nfs.textile +51 -0
  41. data/doc/hadoop-setup.textile +29 -0
  42. data/doc/index.textile +124 -0
  43. data/doc/intro_to_map_reduce/MapReduceDiagram.graffle +0 -0
  44. data/doc/links.textile +42 -0
  45. data/doc/overview.textile +91 -0
  46. data/doc/pig/PigLatinExpressionsList.txt +122 -0
  47. data/doc/pig/PigLatinReferenceManual.html +19134 -0
  48. data/doc/pig/PigLatinReferenceManual.txt +1640 -0
  49. data/doc/tips.textile +116 -0
  50. data/doc/usage.textile +102 -0
  51. data/doc/utils.textile +48 -0
  52. data/examples/README.txt +17 -0
  53. data/examples/and_pig/sample_queries.rb +128 -0
  54. data/examples/apache_log_parser.rb +53 -0
  55. data/examples/count_keys.rb +56 -0
  56. data/examples/count_keys_at_mapper.rb +57 -0
  57. data/examples/graph/adjacency_list.rb +74 -0
  58. data/examples/graph/breadth_first_search.rb +79 -0
  59. data/examples/graph/gen_2paths.rb +68 -0
  60. data/examples/graph/gen_multi_edge.rb +103 -0
  61. data/examples/graph/gen_symmetric_links.rb +53 -0
  62. data/examples/package-local.rb +100 -0
  63. data/examples/package.rb +96 -0
  64. data/examples/pagerank/README.textile +6 -0
  65. data/examples/pagerank/gen_initial_pagerank_graph.pig +57 -0
  66. data/examples/pagerank/pagerank.rb +88 -0
  67. data/examples/pagerank/pagerank_initialize.rb +46 -0
  68. data/examples/pagerank/run_pagerank.sh +19 -0
  69. data/examples/rank_and_bin.rb +173 -0
  70. data/examples/run_all.sh +47 -0
  71. data/examples/sample_records.rb +44 -0
  72. data/examples/size.rb +60 -0
  73. data/examples/word_count.rb +95 -0
  74. data/lib/wukong.rb +11 -0
  75. data/lib/wukong/and_pig.rb +62 -0
  76. data/lib/wukong/and_pig/README.textile +12 -0
  77. data/lib/wukong/and_pig/as.rb +37 -0
  78. data/lib/wukong/and_pig/data_types.rb +30 -0
  79. data/lib/wukong/and_pig/functions.rb +50 -0
  80. data/lib/wukong/and_pig/generate.rb +85 -0
  81. data/lib/wukong/and_pig/generate/variable_inflections.rb +82 -0
  82. data/lib/wukong/and_pig/junk.rb +51 -0
  83. data/lib/wukong/and_pig/operators.rb +8 -0
  84. data/lib/wukong/and_pig/operators/compound.rb +29 -0
  85. data/lib/wukong/and_pig/operators/evaluators.rb +7 -0
  86. data/lib/wukong/and_pig/operators/execution.rb +15 -0
  87. data/lib/wukong/and_pig/operators/file_methods.rb +29 -0
  88. data/lib/wukong/and_pig/operators/foreach.rb +98 -0
  89. data/lib/wukong/and_pig/operators/groupies.rb +212 -0
  90. data/lib/wukong/and_pig/operators/load_store.rb +65 -0
  91. data/lib/wukong/and_pig/operators/meta.rb +42 -0
  92. data/lib/wukong/and_pig/operators/relational.rb +129 -0
  93. data/lib/wukong/and_pig/pig_struct.rb +48 -0
  94. data/lib/wukong/and_pig/pig_var.rb +95 -0
  95. data/lib/wukong/and_pig/symbol.rb +29 -0
  96. data/lib/wukong/and_pig/utils.rb +0 -0
  97. data/lib/wukong/bad_record.rb +18 -0
  98. data/lib/wukong/boot.rb +47 -0
  99. data/lib/wukong/datatypes.rb +24 -0
  100. data/lib/wukong/datatypes/enum.rb +123 -0
  101. data/lib/wukong/dfs.rb +80 -0
  102. data/lib/wukong/encoding.rb +111 -0
  103. data/lib/wukong/extensions.rb +15 -0
  104. data/lib/wukong/extensions/array.rb +18 -0
  105. data/lib/wukong/extensions/blank.rb +93 -0
  106. data/lib/wukong/extensions/class.rb +189 -0
  107. data/lib/wukong/extensions/date_time.rb +24 -0
  108. data/lib/wukong/extensions/emittable.rb +82 -0
  109. data/lib/wukong/extensions/hash.rb +120 -0
  110. data/lib/wukong/extensions/hash_like.rb +119 -0
  111. data/lib/wukong/extensions/hashlike_class.rb +47 -0
  112. data/lib/wukong/extensions/module.rb +2 -0
  113. data/lib/wukong/extensions/pathname.rb +27 -0
  114. data/lib/wukong/extensions/string.rb +65 -0
  115. data/lib/wukong/extensions/struct.rb +17 -0
  116. data/lib/wukong/extensions/symbol.rb +11 -0
  117. data/lib/wukong/logger.rb +53 -0
  118. data/lib/wukong/models/graph.rb +27 -0
  119. data/lib/wukong/rdf.rb +104 -0
  120. data/lib/wukong/schema.rb +37 -0
  121. data/lib/wukong/script.rb +265 -0
  122. data/lib/wukong/script/hadoop_command.rb +111 -0
  123. data/lib/wukong/script/local_command.rb +14 -0
  124. data/lib/wukong/streamer.rb +13 -0
  125. data/lib/wukong/streamer/accumulating_reducer.rb +89 -0
  126. data/lib/wukong/streamer/base.rb +76 -0
  127. data/lib/wukong/streamer/count_keys.rb +30 -0
  128. data/lib/wukong/streamer/count_lines.rb +26 -0
  129. data/lib/wukong/streamer/filter.rb +20 -0
  130. data/lib/wukong/streamer/line_streamer.rb +12 -0
  131. data/lib/wukong/streamer/list_reducer.rb +20 -0
  132. data/lib/wukong/streamer/preprocess_with_pipe_streamer.rb +22 -0
  133. data/lib/wukong/streamer/rank_and_bin_reducer.rb +145 -0
  134. data/lib/wukong/streamer/set_reducer.rb +14 -0
  135. data/lib/wukong/streamer/struct_streamer.rb +48 -0
  136. data/lib/wukong/streamer/summing_reducer.rb +29 -0
  137. data/lib/wukong/streamer/uniq_by_last_reducer.rb +44 -0
  138. data/lib/wukong/typed_struct.rb +12 -0
  139. data/lib/wukong/wukong_class.rb +21 -0
  140. data/spec/bin/hdp-wc_spec.rb +4 -0
  141. data/spec/spec_helper.rb +0 -0
  142. data/wukong.gemspec +179 -0
  143. metadata +214 -0
@@ -0,0 +1,47 @@
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+ #!/usr/bin/env bash
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+
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+ src_path="tmp/README.textile"
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+ out_root="tmp/test"
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+ hdp_opts="--map_tasks=1 --reduce_tasks=1"
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+
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+ # ---------------------------------------------------------------------------
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+ #
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+ # Set up directories and copy over sample input
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+ #
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+
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+ # hdp-rm ${src_path}
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+ # hdp-put `dirname $0`/../README.textile tmp/
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+ # hdp-mkdir $out_root
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+
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+ # ---------------------------------------------------------------------------
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+ #
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+ # Run scripts
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+ #
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+
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+ cmd="word_count"
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+ # hdp-rm -r ${out_root}/${cmd}
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+ # ./examples/${cmd}.rb --run $hdp_opts $src_path ${out_root}/${cmd}
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+ # hdp-catd ${out_root}/${cmd} | head -n 20
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+ word_count=${out_root}/${cmd}
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+
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+ cmd="sample_records"
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+ # hdp-rm -r ${out_root}/${cmd}
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+ # ./examples/${cmd}.rb --sampling_fraction=0.8 \
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+ # --run $hdp_opts $src_path ${out_root}/${cmd}
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+ # hdp-catd ${out_root}/${cmd} | head -n 200 | tail -n 20
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+ sample_records=${out_root}/${cmd}
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+
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+
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+ # cmd="size"
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+ # hdp-rm -r ${out_root}/${cmd}
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+ # ./examples/${cmd}.rb --run $hdp_opts $src_path ${out_root}/${cmd}
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+ # hdp-catd ${out_root}/${cmd}
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+ # size=${out_root}/${cmd}
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+
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+
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+ cmd="count_keys"
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+ hdp-rm -r ${out_root}/${cmd}
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+ ./examples/${cmd}.rb --run $hdp_opts $word_count ${out_root}/${cmd}
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+ hdp-catd ${out_root}/${cmd} | head -n 200 | tail -n 20
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+ count_keys=${out_root}/${cmd}
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+
@@ -0,0 +1,44 @@
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+ #!/usr/bin/env ruby
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+ $: << File.dirname(__FILE__)+'/../lib'
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+ require 'wukong'
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+
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+ #
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+ # Probabilistically emit some fraction of record/lines
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+ #
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+ # Set the sampling fraction at the command line using the
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+ # --sampling_fraction=
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+ # option: for example, to take a random 1/1000th of the lines in huge_files,
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+ # ./examples/sample_records.rb --sampling_fraction=0.001 --go huge_files sampled_files
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+ #
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+ class Mapper < Wukong::Streamer::LineStreamer
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+ include Wukong::Streamer::Filter
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+
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+ #
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+ # floating-point number between 0 and 1 giving the fraction of lines to emit:
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+ # at sampling_fraction=1 all records are emitted, at 0 none are.
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+ #
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+ # Takes its value from a mandatory command-line option
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+ #
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+ def sampling_fraction
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+ @sampling_fraction ||= ( options[:sampling_fraction] && options[:sampling_fraction].to_f ) or
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+ raise "Please supply a --sampling_fraction= argument, a decimal number between 0 and 1"
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+ end
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+
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+ #
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+ # randomly decide to emit +sampling_fraction+ fraction of lines
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+ #
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+ def emit? line
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+ rand < self.sampling_fraction
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+ end
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+ end
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+
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+ class Script < Wukong::Script
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+ def default_options
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+ super.merge :reduce_tasks => 0
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+ end
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+ end
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+
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+ #
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+ # Executes the script
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+ #
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+ Script.new( Mapper, nil ).run
data/examples/size.rb ADDED
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+ #!/usr/bin/env ruby
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+ $: << File.dirname(__FILE__)+'/../lib'
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+ require 'wukong'
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+
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+ module Size
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+ #
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+ # Feed the entire dataset through wc and sum the results
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+ #
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+ class Script < Wukong::Script
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+ #
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+ # Don't implement a wukong script to do something if there's a unix command
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+ # that does it faster: just override map_command or reduce_command in your
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+ # subclass of Wukong::Script to return the complete command line
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+ #
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+ def map_command
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+ '/usr/bin/wc'
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+ end
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+
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+ # Make all records go to one reducer
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+ def default_options
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+ super.merge :reduce_tasks => 1
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+ end
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+ end
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+
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+ #
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+ # Sums the numeric value of each column in its input
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+ #
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+ class Reducer < Wukong::Streamer::Base
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+ attr_accessor :sums
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+
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+ #
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+ # The unix +wc+ command uses whitespace, not tabs, so we'll recordize
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+ # accordingly.
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+ #
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+ def recordize line
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+ line.strip.split(/\s+/)
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+ end
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+
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+ #
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+ # add each corresponding column in the input
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+ #
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+ def process *vals
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+ self.sums = vals.zip( sums || [] ).map{|val,sum| val.to_i + sum.to_i }
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+ end
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+
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+ #
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+ # run through the whole reduction input and then output the total
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+ #
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+ def stream *args
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+ super *args
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+ emit sums
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+ end
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+ end
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+ end
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+
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+ # Execute the script
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+ Size::Script.new(
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+ nil,
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+ Size::Reducer
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+ ).run
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+ #!/usr/bin/env ruby
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+ $: << File.dirname(__FILE__)+'/../lib'
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+ require 'wukong'
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+
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+ module WordCount
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+ class Mapper < Wukong::Streamer::LineStreamer
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+ #
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+ # Split a string into its constituent words.
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+ #
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+ # This is pretty simpleminded:
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+ # * downcase the word
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+ # * Split at any non-alphanumeric boundary, including '_'
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+ # * However, preserve the special cases of 's or 't at the end of a
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+ # word.
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+ #
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+ # tokenize("Jim's dawg won't hunt: dawg_hunt error #3007a4")
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+ # # => ["jim's", "dawd", "won't", "hunt", "dawg", "hunt", "error", "3007a4"]
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+ #
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+ def tokenize str
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+ return [] unless str
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+ str = str.downcase;
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+ # kill off all punctuation except [stuff]'s or [stuff]'t
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+ # this includes hyphens (words are split)
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+ str = str.
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+ gsub(/[^a-zA-Z0-9\']+/, ' ').
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+ gsub(/(\w)\'([st])\b/, '\1!\2').gsub(/\'/, ' ').gsub(/!/, "'")
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+ # Busticate at whitespace
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+ words = str.strip.split(/\s+/)
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+ words.reject!{|w| w.blank? }
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+ words
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+ end
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+
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+ #
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+ # Emit each word in each line.
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+ #
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+ def process line
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+ tokenize(line).each{|word| yield [word, 1] }
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+ end
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+ end
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+
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+ #
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+ # Accumulate the sum record-by-record:
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+ #
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+ class Reducer0 < Wukong::Streamer::Base
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+ attr_accessor :key_count
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+ def process word, count
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+ @last_word ||= word
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+ if (@last_word == word)
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+ self.key_count += 1
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+ else
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+ yield [ @last_word, key_count ]
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+ @last_word = word
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+ end
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+ end
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+ def stream
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+ emit @last_word, key_count
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+ end
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+ end
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+
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+ #
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+ # You can stack up all the values in a list then sum them at once:
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+ #
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+ require 'active_support/core_ext/enumerable'
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+ class Reducer1 < Wukong::Streamer::ListReducer
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+ def finalize
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+ yield [ key, values.map(&:last).map(&:to_i).sum ]
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+ end
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+ end
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+
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+ #
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+ # A bit kinder to your memory manager: accumulate the sum record-by-record:
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+ #
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+ class Reducer2 < Wukong::Streamer::AccumulatingReducer
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+ attr_accessor :key_count
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+ def start!(*args) self.key_count = 0 end
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+ def accumulate(*args) self.key_count += 1 end
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+ def finalize
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+ yield [ key, key_count ]
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+ end
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+ end
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+
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+ #
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+ # ... easiest of all, though: this is common enough that it's already included
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+ #
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+ require 'wukong/streamer/count_keys'
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+ class Reducer3 < Wukong::Streamer::CountKeys
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+ end
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+
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+ end
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+
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+ # Execute the script
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+ Wukong::Script.new(
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+ WordCount::Mapper,
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+ WordCount::Reducer1
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+ ).run
data/lib/wukong.rb ADDED
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+ require 'wukong/boot'
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+ require 'wukong/extensions'
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+ require 'wukong/datatypes'
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+ require 'wukong/logger'
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+ require 'wukong/bad_record'
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+ autoload :TypedStruct, 'wukong/typed_struct'
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+ module Wukong
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+ autoload :Dfs, 'wukong/dfs'
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+ autoload :Script, 'wukong/script'
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+ autoload :Streamer, 'wukong/streamer'
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+ end
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+ require 'wukong/and_pig/pig_var'
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+ require 'wukong/and_pig/as'
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+ require 'wukong/and_pig/functions'
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+ require 'wukong/and_pig/operators'
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+ require 'wukong/and_pig/data_types'
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+ require 'wukong/and_pig/pig_struct'
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+ require 'wukong/and_pig/generate'
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+ require 'wukong/and_pig/symbol'
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+ require 'wukong/and_pig/utils'
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+
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+ module Wukong
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+ #
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+ # Wukong::AndPig lets you generate and run pig[http://hadoop.apache.org/pig]
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+ # code from within ruby (and interactively, from the +irb+ console).
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+ #
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+ # It uses the same typed structures you've defined for Wukong to create
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+ # pig-types aware commands. For example, the Wukong class
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+ #
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+ # class Customer < TypedStruct.new( [:id, Integer],
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+ # [:name, String], [:postal_code, Integer], [:balance, Float] )
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+ # end
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+ #
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+ # will generate a LOAD command for pig as
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+ #
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+ # Customer1.pig_load('q4_reports/customers.tsv').set!
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+ # # => Q4ReportsCustomers2 = LOAD 'q4_reports/customers.tsv'
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+ # AS (id: int, name: chararray, postal_code: int, balance: float) ;
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+ #
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+ # You can write anonymous chains
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+ #
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+ # q1 = Customer1.
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+ # pig_load('q4_reports/customers.tsv').set!.
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+ # distinct.set! ;
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+ # q1.
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+ # group(:by => :postal_code).set!.
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+ # generate([:group, :postal_code], ["COUNT(#{q1.relation})", :customers_per_zip]).set!.
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+ # store!
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+ #
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+ # Q4ReportsCustomers35 = LOAD 'q4_reports/customers.tsv' AS (id: int,name: chararray,postal_code: int,balance: float) ;
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+ # Q4ReportsCustomers36 = DISTINCT Q4ReportsCustomers35 ;
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+ # Q4ReportsCustomers37 = GROUP Q4ReportsCustomers36 BY postal_code ;
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+ # Q4ReportsCustomers38 = FOREACH Q4ReportsCustomers37 GENERATE
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+ # group AS postal_code,
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+ # COUNT(Q4ReportsCustomers36) AS customers_per_zip ;
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+ #
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+ # ---------------------------------------------------------------------------
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+ #
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+ # Note on pig:
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+ #
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+ # 1) Reverse the order of your tables in your join statement. Pig always
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+ # streams the keys of the last input, (materializing in memory the keys of
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+ # the first), so if one of your inputs has less instances of of a given key
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+ # this may help.
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+ #
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+ # 2) Reduce the number of maps and reducers per machine and give it all the
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+ # memory you can.
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+ #
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+ #
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+ module AndPig
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+ end
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+ end
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+
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+ Wukong::AndPig is a small library to more easily generate code for the
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+ "Pig":http://hadoop.apache.org/pig data analysis language.
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+
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+ Wukong::AndPig lets you use the structs from your Wukong scripts to
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+ generate Pig instructions that know their types and structure -- even through
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+ multiple pig commands. For example, if you use +FOREACH ... GENERATE+ to select
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+ only a few of those fields, Wukong::AndPig will know that the result has only
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+ those fields.
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+
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+ We're still trying to figure out if this is a stupid and crazy idea, or just a
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+ crazy idea: Yeah, we're using a functional/OO scripting language to generate code for an
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+ imperative query language that generates Java code for ad-hoc map-reduce operations.
@@ -0,0 +1,37 @@
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+ class AS
2
+ attr_accessor :expr, :name, :type, :ref, :options
3
+ def initialize expr, name=nil, type=nil, ref=nil, *option_flags
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+ case expr
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+ when AS
6
+ self.expr = expr.expr
7
+ self.name = expr.name
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+ self.type = expr.type
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+ self.ref = expr.ref
10
+ self.options = expr.options
11
+ end
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+ self.expr ||= expr
13
+ self.name = name if name
14
+ self.type = type if type
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+ self.ref = ref if ref
16
+ self.options ||= { }
17
+ option_flags.each{|option| self.options[option] = true }
18
+ end
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+
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+ def to_s
21
+ clause = "%-30s \t" % [ref, expr].compact.join('::')
22
+ if name
23
+ clause << "AS #{name}" unless options[:skip_name]
24
+ clause << ":#{type.typify}" unless ((!type) || options[:skip_type])
25
+ end
26
+ clause
27
+ end
28
+
29
+ def self.[] *args
30
+ self.new *args
31
+ end
32
+
33
+ # Useful for feeding back into TypedStruct
34
+ def name_type
35
+ [name, type]
36
+ end
37
+ end
@@ -0,0 +1,30 @@
1
+ # == SimpleDataTypes ==
2
+ # int
3
+ # long
4
+ # double
5
+ # arrays
6
+ # chararray
7
+ # bytearray
8
+ #
9
+ # == ComplexDataTypes ==
10
+ # tuple
11
+ # bag
12
+ # map
13
+
14
+ module Wukong
15
+ module AndPig
16
+ class PigVar
17
+
18
+ end
19
+ end
20
+ end
21
+
22
+ # class ScalarInteger < TypedStruct.new [
23
+ # [:count, Integer ],
24
+ # ]
25
+ # include Wukong::AndPig::PigEmitter
26
+ # def self.load_scalar path
27
+ # var = super path
28
+ # var.to_i
29
+ # end
30
+ # end
@@ -0,0 +1,50 @@
1
+
2
+ # == Built-in Functions
3
+ # EvalFunctions
4
+ # AVG
5
+ # CONCAT
6
+ # COUNT
7
+ # DIFF
8
+ # MIN
9
+ # MAX
10
+ # SIZE
11
+ # SUM
12
+ # TOKENIZE
13
+
14
+ # == NullOperators
15
+ # isnull
16
+ # isnotnull
17
+ #
18
+ # == BooleanOperators
19
+ # and
20
+ # or
21
+ # not
22
+ #
23
+ # == DereferenceOperators
24
+ # tupledereference.
25
+ # mapdereference#
26
+ #
27
+ # == SignOperators
28
+ # positive+
29
+ # negative-
30
+ #
31
+ # == CastOperators
32
+ # (type)$0
33
+ # (type)alias
34
+ #
35
+ # == ArithmeticOperators
36
+ # addition+
37
+ # subtraction-
38
+ # multiplication*
39
+ # division/
40
+ # modulo%
41
+ # bincond?
42
+ #
43
+ # == ComparisonOperators
44
+ # Equal==
45
+ # notequal!=
46
+ # lessthan<
47
+ # greaterthan>
48
+ # lessthanorequalto<=
49
+ # greaterthanorequalto>=
50
+ # patternmatchingmatches