workflow_manager 0.7.5 → 0.7.6

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 5a4bcfadba28876bebd8d498893f8b47aac25ac94ec804c7c0a36df737d53db0
-  data.tar.gz: a41195ba36ffc6d28899254d69f89ee15f631c88d4d0d35a94b604f5d922d4cd
+  metadata.gz: e2da7b0c22f10f971c6dc3eb21c89b8321a8f52c2bda0bd42917c20a625ce995
+  data.tar.gz: 2ae4ffec963b02a83f37a3034af4af3835e9b27e018d05b7294979e716b3ec47
 SHA512:
-  metadata.gz: c90748c7b70486e627a207ef85ffea4f3f1ad965c2083b15225a86e8731ec6248a2e35512757859f9696d4eb6f2d5dd8aea873f574734f3686e2692fb6e6e31b
-  data.tar.gz: c425daa92e3d7bb94a4d6a3eb30dcbff2e38e5cd0d0d4c4e556beda69d094f94ae9ac6fb34523400ea07ec7c29070ed729dac1e808c50ffd1b71cf46844263ea
+  metadata.gz: 120bd8ae2bbae899b096d630b7cc050f828b0004c7cf9432cf7d4e16113d4c71d542c5ab8d32fbdb953199e5ae491aaadac0950759b371810b7c84170fc01f1f
+  data.tar.gz: 2c82352987cfcbfced6fe32bbe6a38544788b4d686277bd785a67a719ad22fef052102623388aec7bece99c059b7eb9c921bd07de695097cde7a87177f2ad26e

data/config/environments/redis.conf

@@ -1,6 +1,6 @@
 loglevel debug
 logfile ./logs/redis.log
-databases 4
+databases 5
 save 300 10
 rdbcompression yes
 dir ./dbs

data/lib/workflow_manager/server.rb

@@ -163,6 +163,7 @@ module WorkflowManager
                     RedisDB.new(1, @redis_conf)
                 end
       @jobs = RedisDB.new(2, @redis_conf)
+      @trees = RedisDB.new(4, @redis_conf)
 
       @system_log = File.join(@log_dir, "system.log")
       @mutex = Mutex.new
@@ -555,6 +556,19 @@ module WorkflowManager
     def cluster_node_list
       @cluster.node_list
     end
+    def save_dataset_tree(project_number, json)
+      @trees.transaction do |trees|
+        trees[project_number] = json
+      end
+      json
+    end
+    def load_dataset_tree(project_number)
+      json = nil
+      @trees.transaction do |trees|
+        json = trees[project_number]
+      end
+      json
+    end
   end
 end
 

data/lib/workflow_manager/version.rb

@@ -1,3 +1,3 @@
 module WorkflowManager
-  VERSION = "0.7.5"
+  VERSION = "0.7.6"
 end

data/start_workflow_manager.sh

@@ -8,4 +8,4 @@ which g-sub
 which g-req
 mkdir -p logs
 mkdir -p dbs
-bundle exec workflow_manager -d druby://fgcz-h-032:40001
+bundle exec workflow_manager -d druby://fgcz-h-031:40001

data/test/job_list.rb

@@ -1,13 +1,13 @@
 #!/usr/bin/env ruby
 # encoding: utf-8
-# Version = '20210723-134812'
+# Version = '20211001-104513'
 
 PORT = (ARGV[0]||6380).to_i
 require 'redis'
 db0 = Redis.new(port: PORT, db: 0)
 db1 = Redis.new(port: PORT, db: 1)
 db2 = Redis.new(port: PORT, db: 2)
-#db3 = Redis.new(port: 6380, db: 3)
+db4 = Redis.new(port: PORT, db: 4)
 
 class Redis
   def show_all
@@ -18,8 +18,8 @@ class Redis
   end
 end
 
-dbs = [db0, db1, db2]
-db_notes = ["state DB", "log DB", "project job DB"]
+dbs = [db0, db1, db2, db4]
+db_notes = ["state DB", "log DB", "project job DB", "JS tree DB"]
 
 dbs.each.with_index do |db, i|
   note = db_notes[i]
@@ -48,3 +48,10 @@ db2.keys.sort.each do |key|
   value = db2.get(key)
   puts [key, value].join("\t")
 end
+
+puts
+puts "db3, status DB3, project specific"
+db3.keys.sort.each do |key|
+  value = db3.get(key)
+  puts [key, value].join("\t")
+end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: workflow_manager
 version: !ruby/object:Gem::Version
-  version: 0.7.5
+  version: 0.7.6
 platform: ruby
 authors:
 - Functional Genomics Center Zurich
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2021-08-15 00:00:00.000000000 Z
+date: 2021-10-01 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler