weka 0.1.0-java

data/lib/weka/core/loader.rb

@@ -0,0 +1,32 @@
+require 'weka/core/converters'
+
+module Weka
+  module Core
+    class Loader
+      java_import 'java.io.File'
+
+      class << self
+        def load_arff(file)
+          load_with(Converters::ArffLoader, file: file)
+        end
+
+        def load_csv(file)
+          load_with(Converters::CSVLoader, file: file)
+        end
+
+        def load_json(file)
+          load_with(Converters::JSONLoader, file: file)
+        end
+
+        private
+
+        def load_with(loader_class, file:)
+          loader        = loader_class.new
+          loader.source = File.new(file)
+          loader.data_set
+        end
+      end
+    end
+
+  end
+end

data/lib/weka/core/saver.rb

@@ -0,0 +1,34 @@
+require 'weka/core/converters'
+
+module Weka
+  module Core
+    class Saver
+      java_import 'java.io.File'
+
+      class << self
+        def save_arff(file:, instances:)
+          save_with(Converters::ArffSaver, file: file, instances: instances)
+        end
+
+        def save_csv(file:, instances:)
+          save_with(Converters::CSVSaver, file: file, instances: instances)
+        end
+
+        def save_json(file:, instances:)
+          save_with(Converters::JSONSaver, file: file, instances: instances)
+        end
+
+        private
+
+        def save_with(saver_class, file:, instances:)
+          saver           = saver_class.new
+          saver.instances = instances
+          saver.file      = File.new(file)
+
+          saver.write_batch
+        end
+      end
+    end
+
+  end
+end

data/lib/weka/exceptions.rb

@@ -0,0 +1,6 @@
+module Weka
+  class Error < StandardError; end
+
+  class UnassignedClassError < Error; end
+  class UnassignedTrainingInstancesError < Error; end
+end

data/lib/weka/filters.rb

@@ -0,0 +1 @@
+Weka.require_all :filters

data/lib/weka/filters/filter.rb

@@ -0,0 +1,9 @@
+module Weka
+  module Filters
+    java_import 'weka.filters.Filter'
+
+    class Filter
+    end
+
+  end
+end

data/lib/weka/filters/supervised/attribute.rb

@@ -0,0 +1,26 @@
+require 'weka/class_builder'
+
+module Weka
+  module Filters
+    module Supervised
+      module Attribute
+        include ClassBuilder
+
+        build_classes :AddClassification,
+                      :AttributeSelection,
+                      :ClassConditionalProbabilities,
+                      :ClassOrder,
+                      :Discretize,
+                      :MergeNominalValues,
+                      :NominalToBinary,
+                      :PartitionMembership
+
+        class AttributeSelection
+          alias :use_evaluator :set_evaluator
+          alias :use_search    :set_search
+        end
+
+      end
+    end
+  end
+end

data/lib/weka/filters/supervised/instance.rb

@@ -0,0 +1,16 @@
+require 'weka/class_builder'
+
+module Weka
+  module Filters
+    module Supervised
+      module Instance
+        include ClassBuilder
+
+        build_classes :ClassBalancer,
+                      :Resample,
+                      :SpreadSubsample,
+                      :StratifiedRemoveFolds
+      end
+    end
+  end
+end

data/lib/weka/filters/unsupervised/attribute.rb

@@ -0,0 +1,67 @@
+require 'weka/class_builder'
+
+module Weka
+  module Filters
+    module Unsupervised
+      module Attribute
+        include ClassBuilder
+
+        build_classes :AbstractTimeSeries,
+                      :Add,
+                      :AddCluster,
+                      :AddExpression,
+                      :AddID,
+                      :AddNoise,
+                      :AddUserFields,
+                      :AddUserFieldsBeanInfo,
+                      :AddValues,
+                      :Center,
+                      :ChangeDateFormat,
+                      :ClassAssigner,
+                      :ClusterMembership,
+                      :Copy,
+                      :Discretize,
+                      :FirstOrder,
+                      :InterquartileRange,
+                      :KernelFilter,
+                      :MakeIndicator,
+                      :MathExpression,
+                      :MergeInfrequentNominalValues,
+                      :MergeManyValues,
+                      :MergeTwoValues,
+                      :NominalToBinary,
+                      :NominalToString,
+                      :Normalize,
+                      :NumericCleaner,
+                      :NumericToBinary,
+                      :NumericToNominal,
+                      :NumericTransform,
+                      :Obfuscate,
+                      :PartitionedMultiFilter,
+                      :PKIDiscretize,
+                      :PotentialClassIgnorer,
+                      :PrincipalComponents,
+                      :RandomProjection,
+                      :RandomSubset,
+                      :Remove,
+                      :RemoveByName,
+                      :RemoveType,
+                      :RemoveUseless,
+                      :RenameAttribute,
+                      :RenameNominalValues,
+                      :Reorder,
+                      :ReplaceMissingValues,
+                      :ReplaceMissingWithUserConstant,
+                      :ReplaceWithMissingValue,
+                      :SortLabels,
+                      :Standardize,
+                      :StringToNominal,
+                      :StringToWordVector,
+                      :SwapValues,
+                      :TimeSeriesDelta,
+                      :TimeSeriesTranslate,
+                      :Transpose
+      end
+    end
+  end
+end

data/lib/weka/filters/unsupervised/instance.rb

@@ -0,0 +1,25 @@
+require 'weka/class_builder'
+
+module Weka
+  module Filters
+    module Unsupervised
+      module Instance
+        include ClassBuilder
+
+        build_classes :NonSparseToSparse,
+                      :Randomize,
+                      :RemoveDuplicates,
+                      :RemoveFolds,
+                      :RemoveFrequentValues,
+                      :RemoveMisclassified,
+                      :RemovePercentage,
+                      :RemoveRange,
+                      :RemoveWithValues,
+                      :Resample,
+                      :ReservoirSample,
+                      :SparseToNonSparse,
+                      :SubsetByExpression
+      end
+    end
+  end
+end

data/lib/weka/filters/utils.rb

@@ -0,0 +1,17 @@
+require 'active_support/concern'
+
+module Weka
+  module Filters
+    module Utils
+      extend ActiveSupport::Concern
+
+      included do
+        def filter(instances)
+          set_input_format(instances)
+          Filter.use_filter(instances, self)
+        end
+      end
+
+    end
+  end
+end

data/lib/weka/jars.rb

@@ -0,0 +1,19 @@
+require 'active_support/concern'
+
+module Weka
+  module Jars
+    extend ActiveSupport::Concern
+
+    included do
+      require 'lock_jar'
+
+      lib_path = File.expand_path('../../', File.dirname(__FILE__))
+      lockfile = File.join(lib_path, 'Jarfile.lock')
+      jars_dir = File.join(lib_path, 'jars')
+
+      LockJar.install(lockfile, local_repo: jars_dir)
+      LockJar.load(lockfile, local_repo: jars_dir)
+    end
+
+  end
+end

data/lib/weka/version.rb

@@ -0,0 +1,3 @@
+module Weka
+  VERSION = "0.1.0"
+end

data/weka.gemspec

@@ -0,0 +1,32 @@
+# coding: utf-8
+lib = File.expand_path('../lib', __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+require 'weka/version'
+
+Gem::Specification.new do |spec|
+  spec.name          = 'weka'
+  spec.version       = Weka::VERSION
+  spec.authors       = ['Paul Götze']
+  spec.email         = ['paul.christoph.goetze@gmail.com']
+
+  spec.summary       = %q{Machine Learning & Data Mining with JRuby.}
+  spec.description   = %q{A wrapper for the Weka library (http://www.cs.waikato.ac.nz/ml/weka/)}
+  spec.homepage      = 'https://github.com/paulgoetze/weka-jruby'
+  spec.license       = 'MIT'
+
+  spec.platform               = 'java'
+  spec.required_ruby_version  = '~> 2.0'
+
+  spec.files         = `git ls-files -z`.split("\x0").reject { |f| f.match(%r{^(test|spec|features)/}) }
+  spec.bindir        = 'bin'
+  spec.executables   = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
+  spec.require_paths = ['lib']
+
+  spec.add_runtime_dependency     'lock_jar',         '~> 0.13'
+  spec.add_runtime_dependency     'activesupport',    '~> 4.0'
+
+  spec.add_development_dependency 'bundler',          '~> 1.6'
+  spec.add_development_dependency 'rake',             '~> 10.0'
+  spec.add_development_dependency 'rspec',            '~> 3.0'
+  spec.add_development_dependency 'shoulda-matchers', '~> 3.0'
+end

metadata

@@ -0,0 +1,183 @@
+--- !ruby/object:Gem::Specification
+name: weka
+version: !ruby/object:Gem::Version
+  version: 0.1.0
+platform: java
+authors:
+- Paul Götze
+autorequire:
+bindir: bin
+cert_chain: []
+date: 2015-12-26 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: lock_jar
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.13'
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.13'
+  prerelease: false
+  type: :runtime
+- !ruby/object:Gem::Dependency
+  name: activesupport
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '4.0'
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '4.0'
+  prerelease: false
+  type: :runtime
+- !ruby/object:Gem::Dependency
+  name: bundler
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.6'
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.6'
+  prerelease: false
+  type: :development
+- !ruby/object:Gem::Dependency
+  name: rake
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+  prerelease: false
+  type: :development
+- !ruby/object:Gem::Dependency
+  name: rspec
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+  prerelease: false
+  type: :development
+- !ruby/object:Gem::Dependency
+  name: shoulda-matchers
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+  prerelease: false
+  type: :development
+description: A wrapper for the Weka library (http://www.cs.waikato.ac.nz/ml/weka/)
+email:
+- paul.christoph.goetze@gmail.com
+executables:
+- console
+- setup
+extensions: []
+extra_rdoc_files: []
+files:
+- ".gitignore"
+- ".rspec"
+- ".travis.yml"
+- CODE_OF_CONDUCT.md
+- Gemfile
+- Jarfile
+- Jarfile.lock
+- MIT-LICENSE.txt
+- README.md
+- Rakefile
+- bin/console
+- bin/setup
+- lib/weka.rb
+- lib/weka/attribute_selection.rb
+- lib/weka/attribute_selection/attribute_selection.rb
+- lib/weka/attribute_selection/evaluator.rb
+- lib/weka/attribute_selection/search.rb
+- lib/weka/class_builder.rb
+- lib/weka/classifiers.rb
+- lib/weka/classifiers/bayes.rb
+- lib/weka/classifiers/evaluation.rb
+- lib/weka/classifiers/functions.rb
+- lib/weka/classifiers/lazy.rb
+- lib/weka/classifiers/meta.rb
+- lib/weka/classifiers/rules.rb
+- lib/weka/classifiers/trees.rb
+- lib/weka/classifiers/utils.rb
+- lib/weka/clusterers.rb
+- lib/weka/clusterers/cluster_evaluation.rb
+- lib/weka/clusterers/utils.rb
+- lib/weka/concerns.rb
+- lib/weka/concerns/buildable.rb
+- lib/weka/concerns/describable.rb
+- lib/weka/concerns/optionizable.rb
+- lib/weka/concerns/persistent.rb
+- lib/weka/core.rb
+- lib/weka/core/attribute.rb
+- lib/weka/core/converters.rb
+- lib/weka/core/dense_instance.rb
+- lib/weka/core/instances.rb
+- lib/weka/core/loader.rb
+- lib/weka/core/saver.rb
+- lib/weka/exceptions.rb
+- lib/weka/filters.rb
+- lib/weka/filters/filter.rb
+- lib/weka/filters/supervised/attribute.rb
+- lib/weka/filters/supervised/instance.rb
+- lib/weka/filters/unsupervised/attribute.rb
+- lib/weka/filters/unsupervised/instance.rb
+- lib/weka/filters/utils.rb
+- lib/weka/jars.rb
+- lib/weka/version.rb
+- weka.gemspec
+homepage: https://github.com/paulgoetze/weka-jruby
+licenses:
+- MIT
+metadata: {}
+post_install_message:
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - "~>"
+    - !ruby/object:Gem::Version
+      version: '2.0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project:
+rubygems_version: 2.4.8
+signing_key:
+specification_version: 4
+summary: Machine Learning & Data Mining with JRuby.
+test_files: []