voruby2-preview 1.0.0
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- data/LICENSE +339 -0
- data/Rakefile.rb +113 -0
- data/lib/symphony.rb +1 -0
- data/lib/symphony/symphony.rb +247 -0
- data/lib/voruby.rb +186 -0
- data/lib/voruby/misc/libxml_ext.rb +121 -0
- data/lib/voruby/misc/rexml_ext.rb +223 -0
- data/lib/voruby/resolver/resolver.rb +12 -0
- data/lib/voruby/resolver/sesame.rb +299 -0
- data/lib/voruby/votable/1.0/votable.rb +1807 -0
- data/lib/voruby/votable/1.1/votable.rb +2100 -0
- data/lib/voruby/votable/votable.rb +308 -0
- data/lib/voruby/wesix/wesix.rb +491 -0
- data/test/voruby/resolver/sesame/test.rb +56 -0
- data/test/voruby/votable/1.0/test.rb +714 -0
- data/test/voruby/votable/1.0/votable.basic.xml +660 -0
- data/test/voruby/votable/1.0/votable.html +86 -0
- data/test/voruby/votable/1.0/votable.ns.xml +56 -0
- data/test/voruby/votable/1.1/test.rb +785 -0
- data/test/voruby/votable/1.1/votable.basic.xml +38 -0
- data/test/voruby/votable/1.1/votable.html +86 -0
- data/test/voruby/votable/1.1/votable.large.xml +168492 -0
- data/test/voruby/votable/1.1/votable.ns.xml +56 -0
- data/test/voruby/votable/test.rb +15 -0
- data/test/voruby/wesix/test.rb +268 -0
- data/test/voruby/wesix/testr.fits +28 -0
- metadata +119 -0
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require 'rexml/document'
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module REXML
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module Object
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class ReflectiveElementList
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include Enumerable
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attr_reader :parent, :xpath
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def initialize(parent, *xpath)
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@parent = parent
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@xpath = xpath
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end
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def [](i)
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path = "#{self.xpath.first}[#{i+1}]"
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XPath.first(self.parent, path, self.xpath.last)
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end
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def []=(i, element)
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el = self[i]
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el ? el.replace_with(element) : self<<(element)
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end
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def <<(element)
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path = "#{self.xpath.first}[last()]"
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last = XPath.first(self.parent, path, self.xpath.last)
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last ? last.next_sibling = element : self.parent << element
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end
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def last
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path = "#{self.xpath.first}[last()]"
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XPath.first(self.parent, path, self.xpath.last)
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end
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def first
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path = "#{self.xpath.first}[1]"
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XPath.first(self.parent, path, self.xpath.last)
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end
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def delete_at(i)
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path = "#{self.xpath.first}[#{i+1}]"
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XPath.first(self.parent, path, self.xpath.last).remove
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end
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def size
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path = "count(#{self.xpath.first})"
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XPath.first(self.parent, path, self.xpath.last)
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end
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def to_a
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XPath.match(self.parent, *self.xpath)
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end
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def clear
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self.each { |el| el.remove }
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end
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def replace(ary)
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self.clear
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ary.each { |el| self<<(el) }
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end
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def each
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XPath.each(self.parent, *self.xpath) { |el| yield el }
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end
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end
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class ClassifiedElementList < ReflectiveElementList
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attr_reader :klass
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def initialize(klass, parent, *xpath)
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@klass = klass
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super(parent, *xpath)
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end
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def [](i)
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self.klass.new(super(i))
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end
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def []=(i, obj)
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el = self[i]
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el ? el.node.replace_with(obj.node) : self<<(obj.node)
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end
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def <<(obj)
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super(obj.node)
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end
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def last
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self.klass.new(super())
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end
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def first
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self.klass.new(super())
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end
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def to_a
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super().collect{ |el| self.klass.new(el) }
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end
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def replace(ary)
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self.clear
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ary.each { |obj| self<<(obj) }
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end
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def each
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XPath.each(self.parent, *self.xpath) { |el| yield self.klass.new(el) }
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end
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def clear
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self.each { |el| el.node.remove }
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end
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def ==(ary)
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return false if self.size != ary.size
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self.each_with_index do |item, i|
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return false if item != ary[i]
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end
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return true
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end
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end
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class Base
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attr_reader :node, :xml_element_name
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def self.xsi_namespace; 'http://www.w3.org/2001/XMLSchema-instance' end
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def self.xsd_namespace; 'http://www.w3.org/2001/XMLSchema' end
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def self.xml_type; self.class.to_s.split('::').last end
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def initialize(defn=nil)
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@node = case defn
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when Document then defn.root
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when Element then defn
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when Hash then Element.new(self.xml_element_name)
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when NilClass then Element.new(self.xml_element_name)
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else
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Document.new(defn).root
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end
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initialize_members(defn) if defn.is_a?(Hash)
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end
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def xml_element_name; self.class.to_s.split('::').last end
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def find_namespace_by_href(href)
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self.node.namespaces.find{ |prefix, uri| uri == href }
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end
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def get_attribute(name, ns=nil)
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attribute = self.node.attributes.get_attribute_ns(ns, name)
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attribute ? attribute.value : nil
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end
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def set_attribute(name, value, ns=nil)
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self.node.attributes[attribute_xpath_for(name, ns)] = value.to_s
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end
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def get_element(name, ns=nil)
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XPath.first(self.node, *element_xpath_for(name, ns))
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end
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def set_element(name, value, ns)
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el = get_element(name, ns)
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# The element doesn't exist...
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if !el
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el = REXML::Element.new(name)
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@node << el # so insert it
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end
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case value
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when String then el.text = value.to_s
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when REXML::Element then value.name = name; el.replace_with(value)
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end
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el.add_namespace(ns) if !find_namespace_by_href(ns)
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end
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def get_elements(name, ns=nil)
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ReflectiveElementList.new(self.node, *element_xpath_for(name, ns))
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end
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def set_elements(name, values, ns=nil)
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get_elements(name, ns).replace(values)
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end
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def to_s
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formatter = Formatters::Default.new
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xml = ''
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formatter.write(self.node, xml)
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xml
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end
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protected
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def attribute_xpath_for(name, ns=nil)
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if ns
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namespace = find_namespace_by_href(ns)
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namespace ? "#{namespace.first}:#{name}" : name
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else
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name
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end
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end
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def element_xpath_for(name, ns=nil)
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ns ? ["x:#{name}", {'x' => ns}] : [name]
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end
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private
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def initialize_members(args)
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args.each do |name, value|
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send("#{name}=", value)
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end
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end
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end
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end
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end
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require 'soap/rpc/driver'
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require 'ostruct'
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begin
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require 'rubygems'
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rescue LoadError; end
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require 'xml/libxml'
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module VORuby
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# Name resolvers (i.e. the CDS's sesame[http://cdsweb.u-strasbg.fr/cdsws/name_resolver.gml] service)
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module Resolver; end
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end
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require 'voruby/resolver/resolver'
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module VORuby
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module Resolver
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# Sesame[http://cdsweb.u-strasbg.fr/cdsws/name_resolver.gml] is the standard
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# name resolution service of the virtual observatory. There are a couple of
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# ways to use it, but typically one wants the RA and Dec of the target:
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#
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# ra, dec = Sesame.resolve_position('m51') # => the primary J2000 RA and Dec of M 51 in degrees
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# sesame = Sesame.resolve('m51') # => a Sesame object with in-depth information about the name resolution
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# puts sesame.jradeg, sesame.jdedeg
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#
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# It's also possible to change the location of the web service used (to a mirror, say) and to specify
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# which resolvers sesame should aggregate over (by default Simbad is used).
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class Sesame
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# The result of the name resolution as an XML::Node.
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# Not available until after #resolve has been called.
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attr_reader :xml
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# Whether to try to determine if the sesame service
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# is available or not before each name resolution.
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# The default is false.
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attr_accessor :check_availability
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# Resolve the <tt>target</tt>.
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# The optional <tt>against</tt> may be one of <tt>:simbad</tt>, <tt>:ned</tt>, <tt>:vizier</tt> or <tt>:all</tt>.
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# Simbad is the most reliable, so that's the default.
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# <tt>options</tt> is a hash with the following keys:
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#
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# [<tt>:end_point</tt>] the sesame SOAP endpoint to use (default: http://cdsws.u-strasbg.fr/axis/services/Sesame)
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# [<tt>:check_availability</tt>] whether to try to determine if the sesame service is available or not before each name resolution (default: false)
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#
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# Returns a Sesame object, and is exactly equivalent to:
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#
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# sesame = Sesame.new
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# sesame.resolve
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def self.resolve(target, against=:simbad, options={})
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sesame = Sesame.new(options)
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sesame.resolve(target, against)
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sesame
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end
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# Resolve the <tt>target</tt>, but return only the primary position and no
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# other information. The parameters are as for #resolve with the addition
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# of <tt>as</tt> which may be <tt>:degrees</tt> (default) or <tt>:sexigesimal</tt>.
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# In the former case, an array of floats (ra, dec) is returned while in the latter
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# an array of strings.
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#
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# Sesame.resolve_position('m51') # => [202.4682083, 47.1946667]
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# Sesame.resolve_position('m51', :sexigesimal) # => ['13:29:52.36', '+47:11:40.8']
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def self.resolve_position(target, against=:simbad, as=:degrees, options={})
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self.resolve(target, against, options).position(as)
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end
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# Create a new sesame name resolver.
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# <tt>options</tt> is a hash with the following keys:
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#
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# [<tt>:end_point</tt>] the sesame SOAP endpoint to use (default: http://cdsws.u-strasbg.fr/axis/services/Sesame)
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# [<tt>:check_availability</tt>] whether to try to determine if the sesame service is available or not before each name resolution (default: false)
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#
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# sesame = Sesame.new(
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# :end_point => 'http://vizier.nao.ac.jp:8080/axis/services/Sesame' # maybe we're in Japan...
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# :check_availability => true # and we want to always check the availability of the service
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# )
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def initialize(options={})
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self.end_point = options[:end_point] || 'http://cdsws.u-strasbg.fr/axis/services/Sesame'
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self.check_availability = options[:check_availability] || false
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end
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# The "end-point" or location of the name resolver's webservice.
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def end_point
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@end_point
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end
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# Set the end-point or location of the name resolver's webservice.
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# sesame.end_point = 'http://vizier.nao.ac.jp:8080/axis/services/Sesame'
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def end_point=(epoint)
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@end_point = epoint
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# We don't use the WSDL for this because ruby doesn't deal well with method overloading.
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@resolver = SOAP::RPC::Driver.new(@end_point)
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@resolver.add_rpc_method('sesame', 'name', 'resultType', 'all', 'service')
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@resolver.add_rpc_method('getAvailability')
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end
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# Retrieve whatever information we can about the position of the specified <tt>target</tt>.
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# The optional <tt>against</tt> may be one of <tt>:simbad</tt>, <tt>:ned</tt>, <tt>:vizier</tt> or <tt>:all</tt>.
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# Simbad is the most reliable, so that's the default.
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#
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# sesame.resolve('m51', :all) # use all the resources at sesame's disposal
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#
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# This method may throw an exception if:
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#
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# * #end_point doesn't exist
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# * you have set #check_availabilty to true and the resolver has indicated it is not available
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def resolve(target, against=:simbad)
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raise "Sesame at #{self.end_point} is not currently available" if self.check_availability and !self.available?
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parser = XML::Parser.new
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parser.string =
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@resolver.sesame(target.to_s, 'x', true, service_designation(against))
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@xml = parser.parse.root
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end
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# The target you requested name resolution on.
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def target
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self.xml.find_first('target').content
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end
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|
+
# Any information that sesame sent back with your results.
|
113
|
+
def infos
|
114
|
+
self.xml.find('INFO').collect{ |i| i.content }
|
115
|
+
end
|
116
|
+
|
117
|
+
# Any errors reported by sesame sent back with your results.
|
118
|
+
def errors
|
119
|
+
self.xml.find('ERROR').collect{ |e| e.content }
|
120
|
+
end
|
121
|
+
|
122
|
+
# Sesame actually aggregates results from a number of sources.
|
123
|
+
# Returns an array of ResolvedInfo objects, one for each resource
|
124
|
+
# polled (i.e. some combination of Simbad, VizieR and Ned).
|
125
|
+
def resolvers
|
126
|
+
self.xml.find('Resolver').collect{ |r| ResolvedInfo.new(r) }
|
127
|
+
end
|
128
|
+
|
129
|
+
# A shortcut for ResolvedInfo#position.
|
130
|
+
# Assumes the first resolver is the one you're most
|
131
|
+
# interested in.
|
132
|
+
def position(as=:degrees)
|
133
|
+
self.resolvers.first.position(as)
|
134
|
+
end
|
135
|
+
|
136
|
+
# Checks to see whether sesame is available.
|
137
|
+
# At this point it's assumed the service is present at
|
138
|
+
# the location specified by #end_point. This just checks
|
139
|
+
# to see whether sesame reports itself as available or not.
|
140
|
+
def available?
|
141
|
+
# We don't use an XML parser here because (as of 2007-01-04)
|
142
|
+
# the validTo tag isn't closed properly, rendering the XML
|
143
|
+
# malformed.
|
144
|
+
result = @resolver.getAvailability
|
145
|
+
result.match(/<available>\s*(.*)\s*<\/available>/)[1] == 'true'
|
146
|
+
end
|
147
|
+
|
148
|
+
private
|
149
|
+
|
150
|
+
def service_designation(svc)
|
151
|
+
{
|
152
|
+
:simbad => 'S',
|
153
|
+
:ned => 'N',
|
154
|
+
:vizier => 'V',
|
155
|
+
:all => 'A'
|
156
|
+
}[svc] || svc
|
157
|
+
end
|
158
|
+
|
159
|
+
# A simple object that represents a name resolution attempt.
|
160
|
+
class ResolvedInfo
|
161
|
+
attr_reader :xml
|
162
|
+
|
163
|
+
# Create a ResolvedInfo object from an appropriate
|
164
|
+
# XML::Node (one that represents a <Resolver> XML element).
|
165
|
+
def initialize(xml)
|
166
|
+
@xml = xml
|
167
|
+
end
|
168
|
+
|
169
|
+
# The name of the resolver (i.e. Simbad).
|
170
|
+
def name
|
171
|
+
self.xml['name']
|
172
|
+
end
|
173
|
+
|
174
|
+
def code
|
175
|
+
self.xml['code']
|
176
|
+
end
|
177
|
+
|
178
|
+
# Any info accompanying the name resolution.
|
179
|
+
# Returns an array of strings.
|
180
|
+
def infos
|
181
|
+
self.xml.find('INFO').collect{ |i| i.content }
|
182
|
+
end
|
183
|
+
|
184
|
+
# Any errors accompanying the name resolution.
|
185
|
+
# Returns an array of string.
|
186
|
+
def errors
|
187
|
+
self.xml.find('ERROR').collect{ |e| e.content }
|
188
|
+
end
|
189
|
+
|
190
|
+
# The classification of the object (i.e. Seyfert_2 or QSO).
|
191
|
+
def otype
|
192
|
+
self.xml.find_first('otype').content if self.xml.find_first('otype')
|
193
|
+
end
|
194
|
+
|
195
|
+
# The J2000 coordinates of the object in sexigesimal format (i.e. '13:29:52.36 +47:11:40.8')
|
196
|
+
def jpos
|
197
|
+
self.xml.find_first('jpos').content if self.xml.find_first('jpos')
|
198
|
+
end
|
199
|
+
|
200
|
+
# The J2000 right ascension of the object in decimal degrees.
|
201
|
+
def jradeg
|
202
|
+
self.xml.find_first('jradeg').content.to_f if self.xml.find_first('jradeg')
|
203
|
+
end
|
204
|
+
|
205
|
+
# The J2000 declination of the object in decimal degrees.
|
206
|
+
def jdedeg
|
207
|
+
self.xml.find_first('jdedeg').content.to_f if self.xml.find_first('jdedeg')
|
208
|
+
end
|
209
|
+
|
210
|
+
# A bibcode that corresponds to the publication in which the position
|
211
|
+
# of the object was determined.
|
212
|
+
def ref_pos
|
213
|
+
self.xml.find_first('refPos').content if self.xml.find_first('refPos')
|
214
|
+
end
|
215
|
+
|
216
|
+
# The error of the right ascension in milliarcseconds.
|
217
|
+
def err_ra_mas
|
218
|
+
self.xml.find_first('errRAmas').content.to_f if self.xml.find_first('errRAmas')
|
219
|
+
end
|
220
|
+
|
221
|
+
# The error of the declination in milliarcseconds.
|
222
|
+
def err_de_mas
|
223
|
+
self.xml.find_first('errDEmas').content.to_f if self.xml.find_first('errDEmas')
|
224
|
+
end
|
225
|
+
|
226
|
+
# The redshift of the object.
|
227
|
+
def z
|
228
|
+
self.xml.find_first('z').content.to_f if self.xml.find_first('z')
|
229
|
+
end
|
230
|
+
|
231
|
+
# The error in the redshift of the object.
|
232
|
+
def errz
|
233
|
+
self.xml.find_first('errz').content.to_i if self.xml.find_first('errz')
|
234
|
+
end
|
235
|
+
|
236
|
+
# A bibcode that corresponds to the publication in which the redshift
|
237
|
+
# of the object was determined.
|
238
|
+
def refz
|
239
|
+
self.xml.find_first('refz').content if self.xml.find_first('refz')
|
240
|
+
end
|
241
|
+
|
242
|
+
# The velocity of the object in km/s.
|
243
|
+
def vel
|
244
|
+
self.xml.find_first('Vel').content.to_f if self.xml.find_first('Vel')
|
245
|
+
end
|
246
|
+
|
247
|
+
# The error in the velocity of the object in km/s.
|
248
|
+
def err_vel
|
249
|
+
self.xml.find_first('errVel').content.to_if if self.xml.find_first('errVel')
|
250
|
+
end
|
251
|
+
|
252
|
+
# A bibcode that corresponds to the publication in which the velocity
|
253
|
+
# of the object was determined.
|
254
|
+
def ref_vel
|
255
|
+
self.xml.find_first('refVel').content if self.xml.find_first('refVel')
|
256
|
+
end
|
257
|
+
|
258
|
+
# The morphological type of the object (i.e. Sc).
|
259
|
+
def mtype
|
260
|
+
self.xml.find_first('MType').content if self.xml.find_first('MType')
|
261
|
+
end
|
262
|
+
|
263
|
+
# The spectral type of the object (i.e. A10)
|
264
|
+
def sptype
|
265
|
+
self.xml.find_first('spType').content if self.xml.find_first('spType')
|
266
|
+
end
|
267
|
+
|
268
|
+
# The canonical name of the object.
|
269
|
+
def oname
|
270
|
+
self.xml.find_first('oname').content if self.xml.find_first('oname')
|
271
|
+
end
|
272
|
+
|
273
|
+
# The number of references to this object.
|
274
|
+
def nrefs
|
275
|
+
self.xml.find_first('nrefs').content.to_i if self.xml.find_first('nrefs')
|
276
|
+
end
|
277
|
+
|
278
|
+
# A list of aliases for the object.
|
279
|
+
# Returns a list of strings.
|
280
|
+
def aliases
|
281
|
+
self.xml.find('alias').collect{ |a| a.content }
|
282
|
+
end
|
283
|
+
|
284
|
+
# The J2000 position of the object in degrees or sexigesimal format.
|
285
|
+
# info.position(:degrees) # => [202.4682083, 47.1946667]
|
286
|
+
# info.position(:sexigesimal) # => ['13:29:52.36', '+47:11:40.8']
|
287
|
+
def position(as=:degrees)
|
288
|
+
case as
|
289
|
+
when :sexigesimal then (self.jpos || '').split(/\s+/)
|
290
|
+
else
|
291
|
+
[self.jradeg, self.jdedeg]
|
292
|
+
end
|
293
|
+
end
|
294
|
+
end
|
295
|
+
|
296
|
+
end
|
297
|
+
|
298
|
+
end
|
299
|
+
end
|