virust-locator-ruby 0.1.0 → 0.3.0

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@@ -1,7 +1,7 @@
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data/README.md

@@ -16,7 +16,10 @@ gem install virust-locator-ruby
 
 ## Usage
 
+```ruby
+require 'virust_locator'
 VirustLocator::Locator.exec("GAAAGCATAGTAATATGGGGAAAGACTCCTAAA")
+```
 
 =>
 
@@ -40,6 +43,20 @@ Options:
 
 -V, --version Print version
 
+## Change Log
+
+### v0.3.0
+
+1. Fixed a bug for displaying the aligned sequences.
+
+2. Now allow multiple sequences to be run at one time. When running multiple sequences in one query (seperate each with [whitespace]), return object is the locator results one line per query.
+
+### v0.2.0
+
+1. Fixed a bug for showing the aligned sequences.
+
+2. Fixed a bug that slowed down the performance.
+
 ## Contributing
 
 Bug reports and pull requests are welcome on GitHub at https://github.com/[USERNAME]/virust-locator-ruby. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the [code of conduct](https://github.com/[USERNAME]/virust-locator-ruby/blob/main/CODE_OF_CONDUCT.md).

data/lib/virust_locator/locator.rb

@@ -10,7 +10,7 @@ module VirustLocator
   #   Locator.exec("GAAAGCATAGTAATATGGGGAAAGACTCCTAAA")
   #   => "3681\t3713\t100\tfalse\tGAAAGCATAGTAATATGGGGAAAGACTCCTAAA\tGAAAGCATAGTAATATGGGGAAAGACTCCTAAA"
   module Locator
-    def self.exec(query, type = "nt", algorithm = "1", ref = "HXB2") # rubocop:disable Metrics/MethodLength
+    def self.init # rubocop:disable Metrics/MethodLength
       file = case RUBY_PLATFORM
              when /arm64-darwin/
                "virust-locator-aarch64-apple-darwin"
@@ -25,12 +25,15 @@ module VirustLocator
              else
                raise "Unsupported platform: #{RUBY_PLATFORM}"
              end
-
       file = File.join(File.dirname(__FILE__), "runnable", file)
-      safe_file = Shellwords.escape(file)
       raise "Excecutable file not found: #{file}" unless File.exist?(file)
 
-      `#{safe_file} -q #{Shellwords.escape(query)} -t #{Shellwords.escape(type)} -a #{Shellwords.escape(algorithm)} -r #{Shellwords.escape(ref)}`.strip # rubocop:disable Layout/LineLength
+      Shellwords.escape(file)
+    end
+
+    def self.exec(query, type = "nt", algorithm = "1", ref = "HXB2")
+      safe_file = init
+      `#{safe_file} -q #{query} -t #{type} -a #{algorithm} -r #{ref}`.strip
     end
   end
 end

data/lib/virust_locator/version.rb

@@ -3,5 +3,5 @@
 
 module VirustLocator
   # The version of the virust-locator-ruby gem.
-  VERSION = "0.1.0"
+  VERSION = "0.3.0"
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: virust-locator-ruby
 version: !ruby/object:Gem::Version
-  version: 0.1.0
+  version: 0.3.0
 platform: ruby
 authors:
 - Shuntai Zhou