viral_seq 1.2.7 → 1.2.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/README.md +6 -2
- data/lib/viral_seq/seq_hash.rb +2 -0
- data/lib/viral_seq/tcs_core.rb +2 -1
- data/lib/viral_seq/version.rb +2 -2
- metadata +2 -2
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: bb2f3be04857f96f8cf15b02e67a585771c04d45d4e4be68e566b4226342b5f0
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data.tar.gz: 2c36ff5494bcf415796a5a8b10da22721a6ea6f574a97601d0a9ad487236e70e
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: abc5622ae5dc8d5e1343f8e85557fc03e169146a34f6d980bf0d5db4dc973d41d81cc89bb0ce9cc0dd5a090d1c58357834431d9d1ad106f31c3a8f0a739ce4b9
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data.tar.gz: a890a557536ff43073258220801bdc8b6294b3c22bc8ec030f245bb9acccfeaebf8f0d3b228233de4e980558e88c953143d57f1ff3bc2a5b366026d7371df67d
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data/README.md
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@@ -179,10 +179,14 @@ qc_seqhash.sdrm_hiv_pr(cut_off)
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## Updates
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### Version 1.2.8-07292021
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1. Fixed an issue when reading .fastq files containing blank_lines.
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### Version 1.2.7-07152021
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1. Optimzed the workflow of the `tcs` pipeline on raw data with uneven lengths.
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`tcs` version to v2.3.
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1. Optimzed the workflow of the `tcs` pipeline on raw data with uneven lengths.
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`tcs` version to v2.3.6.
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### Version 1.2.6-07122021
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data/lib/viral_seq/seq_hash.rb
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data/lib/viral_seq/tcs_core.rb
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@@ -305,7 +305,8 @@ module ViralSeq
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end
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def general_filter(seq)
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return false unless seq
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if seq.size < ($platform_sequencing_length - 10)
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return false
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elsif seq[1..-2] =~ /N/ # sequences with ambiguities except the 1st and last position removed
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return false
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data/lib/viral_seq/version.rb
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metadata
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@@ -1,7 +1,7 @@
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--- !ruby/object:Gem::Specification
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name: viral_seq
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version: !ruby/object:Gem::Version
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version: 1.2.
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version: 1.2.8
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platform: ruby
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authors:
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- Shuntai Zhou
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@@ -9,7 +9,7 @@ authors:
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2021-07-
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date: 2021-07-30 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bundler
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