vienna_rna 0.0.0 → 0.0.1

data/lib/modules/base.rb

@@ -31,7 +31,8 @@ module ViennaRna
     
     def run_with_hooks(flags = {})
       pre_run_check
-      run_without_hooks
+      response = run_without_hooks
+      self.class.method_defined?(:post_process) ? post_process(response) : response  
     end
     
     def pre_run_check

data/lib/modules/fold.rb

@@ -2,6 +2,14 @@
 
 module ViennaRna
   class Fold < Base
-    
+    def post_process(response)
+      structure = response.split(/\n/).last.gsub(/ \(\s*-?\d*\.\d*\)$/, "")
+      
+      unless fasta.seq.length == structure.length
+        raise "Sequence: '#{fasta.seq}'\nStructure: '#{structure}'"
+      else
+        structure
+      end
+    end
   end
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: vienna_rna
 version: !ruby/object:Gem::Version
-  version: 0.0.0
+  version: 0.0.1
   prerelease: 
 platform: ruby
 authors:
@@ -13,7 +13,7 @@ date: 2012-03-26 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bio
-  requirement: &70112760171500 !ruby/object:Gem::Requirement
+  requirement: &70224206504420 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -21,10 +21,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *70112760171500
+  version_requirements: *70224206504420
 - !ruby/object:Gem::Dependency
   name: active_support
-  requirement: &70112760171060 !ruby/object:Gem::Requirement
+  requirement: &70224206503980 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -32,7 +32,7 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *70112760171060
+  version_requirements: *70224206503980
 description: A Ruby API for interacting with the Vienna RNA package.
 email: evansenter@gmail.com
 executables: []